Query 035428
Match_columns 57
No_of_seqs 107 out of 438
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 04:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 99.3 2.8E-12 9.4E-17 96.5 5.1 49 8-56 475-523 (732)
2 1gxm_A Pectate lyase; mechanis 99.1 6.3E-11 2.1E-15 84.2 3.7 39 13-52 96-134 (332)
3 1r76_A Pectate lyase; A-helica 99.0 1.6E-10 5.4E-15 83.8 4.0 40 12-52 173-212 (408)
4 1hzf_A Complement factor C4A; 98.6 2.4E-08 8.1E-13 69.1 2.9 33 14-46 91-123 (367)
5 2sqc_A Squalene-hopene cyclase 98.6 4.3E-08 1.5E-12 72.2 4.3 41 11-51 395-435 (631)
6 2h6f_B Protein farnesyltransfe 98.4 1.3E-07 4.5E-12 68.2 3.3 35 5-39 112-146 (437)
7 1qqf_A Protein (complement C3D 98.4 1.8E-07 6.2E-12 61.8 2.9 34 14-47 38-71 (277)
8 2wy7_A Complement C3D fragment 98.3 3E-07 1E-11 61.8 2.9 34 14-47 54-87 (310)
9 3q7a_B Farnesyltransferase bet 98.1 1.7E-06 5.7E-11 64.4 3.3 35 5-39 100-134 (520)
10 1n4q_B Geranyltransferase type 98.0 1.5E-06 5E-11 61.7 2.0 36 16-52 69-113 (377)
11 2pn5_A TEP1R, thioester-contai 97.8 7.3E-06 2.5E-10 63.9 2.8 33 14-46 872-904 (1325)
12 4acq_A Alpha-2-macroglobulin; 97.5 3.5E-05 1.2E-09 61.6 2.6 32 15-46 984-1019(1451)
13 2hr0_B Complement C3 alpha' ch 97.5 3.6E-05 1.2E-09 58.5 2.6 32 15-46 300-331 (915)
14 1n4q_B Geranyltransferase type 97.0 0.00025 8.4E-09 50.3 2.1 26 11-36 188-213 (377)
15 3dss_B Geranylgeranyl transfer 96.8 0.00048 1.6E-08 47.7 1.9 25 14-38 66-90 (331)
16 3dss_B Geranylgeranyl transfer 96.6 0.00067 2.3E-08 47.0 1.6 26 12-37 160-185 (331)
17 3q7a_B Farnesyltransferase bet 96.5 0.00087 3E-08 49.9 1.6 28 7-35 209-236 (520)
18 2sqc_A Squalene-hopene cyclase 96.4 0.0018 6.2E-08 47.7 3.1 26 8-33 460-485 (631)
19 1w6k_A Lanosterol synthase; cy 96.2 0.0017 5.7E-08 49.0 2.0 35 7-41 115-149 (732)
20 2h6f_B Protein farnesyltransfe 96.2 0.0015 5.2E-08 47.0 1.7 26 16-41 75-101 (437)
21 1hzf_A Complement factor C4A; 95.9 0.0045 1.6E-07 42.6 2.7 26 10-35 138-163 (367)
22 1qqf_A Protein (complement C3D 95.9 0.0063 2.2E-07 39.9 3.2 28 10-37 85-113 (277)
23 4fxk_B Complement C4-A alpha c 95.8 0.0044 1.5E-07 46.0 2.3 32 15-46 369-400 (767)
24 2wy7_A Complement C3D fragment 95.5 0.0095 3.2E-07 39.8 3.0 28 10-37 101-129 (310)
25 2b39_A C3; thioester, immune d 94.7 0.017 5.9E-07 46.5 2.9 33 15-47 1047-1079(1661)
26 3cu7_A Complement C5; Mg domai 93.9 0.029 1E-06 45.1 2.6 32 15-46 1048-1079(1676)
27 3dra_B Geranylgeranyltransfera 92.1 0.072 2.5E-06 38.1 2.2 21 15-35 192-212 (390)
28 3prx_B Cobra venom factor; imm 92.1 0.027 9.3E-07 46.1 0.0 33 15-47 1031-1063(1642)
29 1r76_A Pectate lyase; A-helica 92.0 0.078 2.7E-06 38.4 2.3 22 14-35 314-335 (408)
30 4acq_A Alpha-2-macroglobulin; 91.2 0.1 3.4E-06 42.1 2.3 28 10-37 1034-1061(1451)
31 2hr0_B Complement C3 alpha' ch 88.9 0.28 9.7E-06 37.4 3.0 28 10-37 346-374 (915)
32 1gxm_A Pectate lyase; mechanis 86.5 0.3 1E-05 34.5 1.8 21 13-33 168-188 (332)
33 2pn5_A TEP1R, thioester-contai 86.4 0.54 1.8E-05 36.9 3.3 28 8-35 918-945 (1325)
34 3pya_A ENT-copalyl diphosphate 83.9 0.47 1.6E-05 36.4 2.0 21 16-36 52-72 (727)
35 3p5p_A Taxadiene synthase; cla 83.8 0.46 1.6E-05 36.5 1.8 21 16-36 55-75 (764)
36 3sdr_A Alpha-bisabolene syntha 83.1 0.51 1.7E-05 36.5 1.8 21 16-36 103-123 (817)
37 3s9v_A Abietadiene synthase, c 82.7 0.54 1.8E-05 36.2 1.8 20 16-35 76-95 (785)
38 2bb6_A TCII, TC II, transcobal 81.1 0.99 3.4E-05 32.7 2.6 20 14-34 250-269 (414)
39 2bb6_A TCII, TC II, transcobal 79.8 1.3 4.3E-05 32.1 2.8 22 13-34 201-226 (414)
40 4fxk_B Complement C4-A alpha c 79.8 1.3 4.5E-05 32.7 3.0 27 11-37 416-442 (767)
41 1c6r_A Cytochrome C6; electron 79.3 2.3 8E-05 22.3 3.2 27 2-30 61-87 (89)
42 2dna_A Unnamed protein product 78.1 1.3 4.5E-05 24.8 2.0 16 16-31 48-63 (67)
43 1wgn_A UBAP1, ubiquitin associ 76.5 1.9 6.5E-05 24.1 2.4 17 15-31 46-62 (63)
44 2dhy_A CUE domain-containing p 75.2 1.4 4.9E-05 24.5 1.6 18 15-32 47-64 (67)
45 1ls9_A Cytochrome C6; omega lo 73.7 4 0.00014 21.5 3.2 22 8-29 67-88 (91)
46 1gdv_A Cytochrome C6; RED ALGA 73.2 2.9 9.9E-05 21.6 2.5 25 2-28 58-82 (85)
47 2dah_A Ubiquilin-3; UBA domain 73.2 2.6 9E-05 22.2 2.3 16 16-31 38-53 (54)
48 3prx_B Cobra venom factor; imm 69.5 0.95 3.3E-05 37.2 0.0 27 10-36 1078-1105(1642)
49 3dr0_A Cytochrome C6; photosyn 68.5 5.4 0.00018 20.7 3.0 26 2-29 65-90 (93)
50 1f1f_A Cytochrome C6; heme, pr 68.5 4.3 0.00015 21.1 2.6 22 8-29 66-87 (89)
51 1cyi_A Cytochrome C6, cytochro 68.2 4.6 0.00016 21.2 2.7 22 8-29 64-85 (90)
52 1q02_A Sequestosome 1; helical 68.1 4.4 0.00015 21.8 2.5 23 11-33 5-28 (52)
53 3h7l_A Endoglucanase; dehydrog 66.8 3.7 0.00013 30.8 2.7 18 16-33 196-213 (586)
54 1c75_A Cytochrome C-553; heme, 66.8 4.6 0.00016 20.6 2.4 21 2-26 50-70 (71)
55 2c1d_B SOXX; sulfur oxidation, 66.4 5 0.00017 23.1 2.7 21 7-27 116-136 (137)
56 1w2l_A Cytochrome oxidase subu 66.2 4.8 0.00016 21.4 2.5 20 8-27 80-99 (99)
57 2pmv_A Gastric intrinsic facto 64.8 3.3 0.00011 29.8 2.0 21 14-34 183-203 (399)
58 1wgl_A TOLL-interacting protei 64.4 4.9 0.00017 21.6 2.2 18 15-32 38-55 (59)
59 2cpw_A CBL-interacting protein 63.9 3.9 0.00013 22.1 1.8 16 15-30 47-62 (64)
60 1cf7_B Protein (transcription 63.4 4.5 0.00015 24.0 2.1 14 13-26 61-74 (95)
61 1vej_A Riken cDNA 4931431F19; 63.3 4.3 0.00015 22.9 1.9 17 16-32 58-74 (74)
62 1cch_A Cytochrome C551; electr 62.7 8.3 0.00028 19.7 3.0 18 10-27 65-82 (82)
63 1ufz_A Hypothetical protein BA 62.4 7.3 0.00025 22.7 2.9 22 5-26 43-75 (83)
64 3e6u_A LANC-like protein 1; al 61.2 7.5 0.00026 26.9 3.2 25 14-38 254-278 (411)
65 2b39_A C3; thioester, immune d 60.7 6.1 0.00021 32.1 3.0 25 10-34 1093-1118(1661)
66 3dmi_A Cytochrome C6; electron 60.6 10 0.00035 19.5 3.1 22 8-29 64-85 (88)
67 3dra_B Geranylgeranyltransfera 59.6 5.4 0.00018 28.4 2.3 20 17-36 118-141 (390)
68 1ks8_A Endo-B-1,4-glucanase; c 58.4 6 0.00021 28.0 2.4 20 14-33 94-113 (433)
69 2zxy_A Cytochrome C552, cytoch 57.9 4.8 0.00016 20.7 1.4 20 8-27 68-87 (87)
70 1f1c_A Cytochrome C549; dimeri 56.3 5 0.00017 22.5 1.4 26 9-34 103-129 (129)
71 2wx4_A DCP1, decapping protein 56.3 11 0.00037 19.8 2.6 27 4-32 2-28 (46)
72 3ph2_B Cytochrome C6; photosyn 55.4 10 0.00035 19.3 2.5 26 2-29 59-84 (86)
73 3cu7_A Complement C5; Mg domai 55.0 8.3 0.00028 31.3 2.9 25 10-34 1094-1119(1676)
74 2pmv_A Gastric intrinsic facto 54.0 5.7 0.0002 28.6 1.7 19 15-34 227-245 (399)
75 2exv_A Cytochrome C-551; alpha 53.9 11 0.00037 19.3 2.5 18 10-27 65-82 (82)
76 4fs3_A Enoyl-[acyl-carrier-pro 51.2 17 0.00058 23.0 3.5 28 8-35 218-254 (256)
77 2bwb_A Ubiquitin-like protein 50.5 7 0.00024 19.8 1.3 10 16-25 36-45 (46)
78 1wiv_A UBP14, ubiquitin-specif 50.4 11 0.00037 20.8 2.2 15 16-30 57-71 (73)
79 3gzk_A Cellulase; fold from GH 50.1 11 0.00038 27.5 2.7 19 14-32 192-211 (537)
80 2crn_A Ubash3A protein; compac 49.9 10 0.00035 20.4 2.0 15 16-30 38-52 (64)
81 2g3q_A Protein YBL047C; endocy 49.4 8.4 0.00029 18.7 1.5 10 16-25 32-41 (43)
82 2ekk_A UBA domain from E3 ubiq 49.1 8.4 0.00029 19.1 1.5 10 16-25 36-45 (47)
83 2knz_A Ubiquilin-4; cytoplasm, 47.8 9.4 0.00032 19.7 1.6 12 16-27 40-51 (53)
84 1a56_A C-551, ferricytochrome 47.8 19 0.00063 18.5 2.8 19 9-27 63-81 (81)
85 3c5t_B Exendin-4, exenatide; l 46.6 9.7 0.00033 18.5 1.4 19 11-29 6-24 (31)
86 1cf7_A Protein (transcription 46.5 14 0.00048 20.6 2.3 16 12-27 44-59 (76)
87 1wr1_B Ubiquitin-like protein 45.9 11 0.00038 20.0 1.7 10 16-25 46-55 (58)
88 2cp8_A NEXT to BRCA1 gene 1 pr 44.7 18 0.0006 19.3 2.4 18 15-32 37-54 (54)
89 2zon_G Cytochrome C551; nitrit 44.2 21 0.00073 18.4 2.7 18 10-27 69-86 (87)
90 1ify_A HHR23A, UV excision rep 43.2 8.8 0.0003 19.5 1.0 10 16-25 36-45 (49)
91 1whc_A RSGI RUH-027, UBA/UBX 3 42.1 16 0.00055 19.5 2.0 14 16-29 38-51 (64)
92 1qn2_A Cytochrome CH; electron 42.0 27 0.00093 18.7 3.0 19 9-27 82-100 (100)
93 1ayg_A Cytochrome C-552; elect 41.6 25 0.00084 18.0 2.7 17 10-26 63-79 (80)
94 2dag_A Ubiquitin carboxyl-term 41.6 17 0.00056 20.0 2.0 15 16-30 38-52 (74)
95 2d0s_A Cytochrome C, cytochrom 41.0 18 0.00062 18.4 2.1 23 2-27 57-79 (79)
96 2lfh_A DNA-binding protein inh 40.9 36 0.0012 18.9 3.4 20 9-28 47-67 (68)
97 1i54_A Cytochrome C; zinc-porp 40.8 33 0.0011 18.2 3.2 17 12-28 87-103 (103)
98 1w5c_T Cytochrome C-550; photo 39.4 13 0.00044 22.1 1.4 26 9-34 131-157 (163)
99 1vek_A UBP14, ubiquitin-specif 39.3 18 0.00062 20.4 2.0 14 16-29 58-71 (84)
100 2jy5_A Ubiquilin-1; UBA, alter 39.1 11 0.00037 19.4 0.9 10 16-25 41-50 (52)
101 1ut9_A Cellulose 1,4-beta-cell 37.7 20 0.00069 26.4 2.5 19 14-32 231-249 (609)
102 2ysr_A DEP domain-containing p 37.7 15 0.00051 21.3 1.5 14 17-30 44-59 (105)
103 2ce0_A Cytochrome C6; chloropl 37.4 23 0.00077 18.8 2.1 24 9-34 77-100 (105)
104 2dai_A Ubadc1, ubiquitin assoc 36.5 26 0.00088 19.7 2.4 15 16-30 57-71 (83)
105 1vg5_A RSGI RUH-014, rhomboid 36.2 22 0.00074 19.8 1.9 15 16-30 57-71 (73)
106 3cp5_A Cytochrome C; electron 36.1 41 0.0014 18.4 3.2 19 10-28 104-122 (124)
107 1ia6_A Cellulase CEL9M; cellul 36.0 24 0.00081 25.0 2.6 20 14-33 96-115 (441)
108 1wji_A Tudor domain containing 35.7 25 0.00084 18.8 2.1 14 16-29 37-50 (63)
109 1clc_A Endoglucanase CELD; EC: 35.5 23 0.00079 26.4 2.5 17 14-30 236-252 (639)
110 2w9k_A Cytochrome C, cytochrom 35.4 36 0.0012 18.6 2.9 20 9-28 95-114 (114)
111 2c8s_A Cytochrome C-L; HAEM, h 34.1 30 0.001 21.0 2.6 23 8-30 113-135 (172)
112 3pmm_A Putative cytoplasmic pr 33.7 38 0.0013 23.3 3.3 22 14-35 263-284 (382)
113 1cc5_A Cytochrome C5; electron 33.6 35 0.0012 18.0 2.5 16 10-25 67-82 (83)
114 1h32_B Cytochrome C, SOXX; ele 33.6 28 0.00095 19.8 2.2 19 9-27 119-137 (138)
115 2ql2_B Neurod1, neurogenic dif 32.9 51 0.0017 17.4 3.0 21 8-28 34-55 (60)
116 2ofk_A 3-methyladenine DNA gly 32.9 18 0.00063 23.4 1.5 33 4-36 83-115 (183)
117 1hro_A Cytochrome C2; electron 32.8 31 0.0011 18.5 2.3 18 10-27 89-106 (106)
118 1wve_C 4-cresol dehydrogenase 32.8 54 0.0018 16.8 3.2 21 9-29 56-76 (80)
119 2dak_A Ubiquitin carboxyl-term 32.6 19 0.00066 18.9 1.3 14 16-29 37-50 (63)
120 1ccr_A Cytochrome C; electron 32.5 56 0.0019 17.6 3.3 18 10-27 94-111 (112)
121 1e29_A Cytochrome C549; electr 31.2 35 0.0012 19.8 2.4 25 10-34 106-130 (135)
122 2klz_A Ataxin-3; UIM, ubiquiti 31.1 34 0.0012 18.3 2.1 16 15-32 29-44 (52)
123 3sju_A Keto reductase; short-c 30.8 31 0.0011 21.8 2.3 29 8-36 242-279 (279)
124 2d0w_A Cytochrome CL; electron 30.1 61 0.0021 19.4 3.5 22 8-29 107-128 (170)
125 1veg_A NEDD8 ultimate buster-1 29.7 33 0.0011 19.6 2.0 13 16-28 57-69 (83)
126 1gks_A Cytochrome C551; haloph 29.6 49 0.0017 16.9 2.6 22 2-25 55-76 (78)
127 1mz4_A Cytochrome C550; PSII a 29.0 23 0.0008 20.1 1.3 25 10-34 106-131 (137)
128 2zay_A Response regulator rece 28.9 46 0.0016 18.0 2.5 25 5-29 107-131 (147)
129 1cno_A Cytochrome C552; electr 28.7 35 0.0012 17.6 2.0 20 9-28 65-84 (87)
130 4ae4_A Ubiquitin-associated pr 28.0 29 0.001 20.7 1.7 11 15-25 103-113 (118)
131 1co6_A Protein (cytochrome C2) 28.0 61 0.0021 17.4 3.0 19 10-28 84-102 (107)
132 3nhm_A Response regulator; pro 27.9 50 0.0017 17.4 2.5 28 5-32 101-128 (133)
133 3iol_B Glucagon; receptor-liga 27.7 20 0.0007 16.9 0.8 17 11-27 14-30 (31)
134 4g81_D Putative hexonate dehyd 27.2 48 0.0016 21.6 2.8 27 9-35 218-253 (255)
135 1ycc_A Cytochrome C; electron 25.9 79 0.0027 16.8 3.2 17 11-27 91-107 (108)
136 3oig_A Enoyl-[acyl-carrier-pro 25.8 97 0.0033 19.0 3.9 33 8-40 219-260 (266)
137 3cu4_A Cytochrome C family pro 25.8 73 0.0025 16.1 3.2 17 10-26 67-83 (85)
138 2o2s_A Enoyl-acyl carrier redu 25.3 88 0.003 20.0 3.7 42 8-49 258-308 (315)
139 1dow_B Beta-catenin; four-heli 25.2 46 0.0016 16.1 1.8 18 13-30 12-29 (32)
140 2grg_A Hypothetical protein; Y 24.9 19 0.00064 22.3 0.4 34 4-38 51-84 (120)
141 2gc4_D Cytochrome C-L; electro 24.8 99 0.0034 17.7 3.6 22 8-29 105-126 (147)
142 1kx2_A Mono-heme C-type cytoch 24.8 53 0.0018 16.9 2.2 17 10-26 64-80 (81)
143 3k11_A Putative glycosyl hydro 24.6 39 0.0013 24.2 2.1 44 2-46 282-325 (445)
144 2xfg_A Endoglucanase 1; hydrol 24.5 40 0.0014 24.2 2.1 19 14-32 116-134 (466)
145 2cos_A Serine/threonine protei 24.4 61 0.0021 17.3 2.4 12 16-27 38-49 (54)
146 2gkg_A Response regulator homo 24.1 47 0.0016 17.1 1.9 23 5-27 104-126 (127)
147 2zzs_A Cytochrome C554; C-type 24.0 47 0.0016 17.6 2.0 19 9-27 85-103 (103)
148 2cwb_A Chimera of immunoglobul 23.9 41 0.0014 20.0 1.8 12 16-27 95-106 (108)
149 3ged_A Short-chain dehydrogena 23.8 88 0.003 20.2 3.5 28 8-35 197-231 (247)
150 1u5t_B Defective in vacuolar p 23.8 15 0.00051 23.1 -0.2 36 18-55 19-67 (169)
151 2qv0_A Protein MRKE; structura 23.7 47 0.0016 17.8 1.9 27 5-31 106-132 (143)
152 2ntx_A EMB|CAB41934.1, prone8; 23.1 58 0.002 23.4 2.7 18 9-26 59-79 (365)
153 2l1n_A Uncharacterized protein 22.9 33 0.0011 21.2 1.2 12 16-27 104-115 (120)
154 1v3f_A Pleckstrin 2; three-hel 22.8 35 0.0012 20.2 1.3 9 17-25 41-49 (120)
155 1tf4_A T. fusca endo/EXO-cellu 22.7 50 0.0017 24.4 2.4 18 14-31 95-112 (605)
156 1z96_A DNA-damage, UBA-domain 22.5 29 0.00099 16.0 0.8 9 16-24 32-40 (40)
157 1otr_A Protein CUE2; protein-p 22.3 39 0.0013 17.4 1.3 13 16-28 34-46 (49)
158 1nh1_A Avirulence B protein; h 21.4 69 0.0024 22.7 2.8 35 13-48 89-124 (330)
159 2jg6_A DNA-3-methyladenine gly 21.3 21 0.00072 23.3 0.1 33 4-36 83-115 (186)
160 1fsh_A Dishevelled-1; three-he 21.2 44 0.0015 19.2 1.5 10 17-26 54-63 (105)
161 2dkl_A Trinucleotide repeat co 21.2 49 0.0017 18.7 1.7 14 16-29 49-62 (85)
162 3v2g_A 3-oxoacyl-[acyl-carrier 20.9 94 0.0032 19.5 3.2 21 8-28 235-255 (271)
163 2l4d_A SCO1/SENC family protei 20.4 1.1E+02 0.0037 16.0 3.1 19 10-28 80-98 (110)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.28 E-value=2.8e-12 Score=96.53 Aligned_cols=49 Identities=31% Similarity=0.458 Sum_probs=46.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccccccC
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITSTYTKS 56 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae~f~~ 56 (57)
|+++..+++.+||+||+++||+||||++||++++..|++.+||+|+|..
T Consensus 475 g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~ 523 (732)
T 1w6k_A 475 TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGD 523 (732)
T ss_dssp CSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSS
T ss_pred cchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccc
Confidence 6678899999999999999999999999999999999999999998864
No 2
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.08 E-value=6.3e-11 Score=84.17 Aligned_cols=39 Identities=18% Similarity=0.373 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428 13 PERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST 52 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae 52 (57)
.+++.+||+|||+||++||||++|++++ ..|+++|++++
T Consensus 96 ~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~-~~Yl~~IpFnD 134 (332)
T 1gxm_A 96 RDAVRKAANFLVNSQYSTGALPQFYPLK-GGYSDHATFND 134 (332)
T ss_dssp HHHHHHHHHHHHHHCCTTSCCBSEESCC-SGGGGSEECGG
T ss_pred HHHHHHHHHHHHhccCCCCCccccCCCc-ccccccCCcch
Confidence 5789999999999999999999999997 88999998875
No 3
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.02 E-value=1.6e-10 Score=83.83 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITST 52 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpae 52 (57)
-.+++.+||+|||+||++||||++|++++ ..|+++|++++
T Consensus 173 y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn-~~y~~~IpFnD 212 (408)
T 1r76_A 173 YRDAALKGIEYLLASQFPNGGWPQVWPLE-GGYHDAITYND 212 (408)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCCBSBSSCC-CGGGGSEECGG
T ss_pred HHHHHHHHHHHHHHccCCCCCCcCcCccc-cccccCCCcCc
Confidence 35789999999999999999999999999 68999998765
No 4
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.58 E-value=2.4e-08 Score=69.12 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
+++.+|++|||+|||+||||++|+..++..|+.
T Consensus 91 ~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lT 123 (367)
T 1hzf_A 91 DLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLT 123 (367)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeeccCCCCCcHHHH
Confidence 479999999999999999999999989988876
No 5
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=98.57 E-value=4.3e-08 Score=72.20 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcccccCCCCcccccccCcc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEVKITS 51 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~lnpa 51 (57)
+..+++.+|++||+++||+||||++|+..++..|++.+|+.
T Consensus 395 ~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~ 435 (631)
T 2sqc_A 395 RRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFS 435 (631)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTC
T ss_pred hhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccc
Confidence 34678999999999999999999999999999999988753
No 6
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=98.41 E-value=1.3e-07 Score=68.15 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=31.5
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
+++|.+++.++++++|+||++|||+||||++|+-.
T Consensus 112 ~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~ 146 (437)
T 2h6f_B 112 ELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQ 146 (437)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTC
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCC
Confidence 46788889999999999999999999999999753
No 7
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.37 E-value=1.8e-07 Score=61.80 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~ 47 (57)
+.+.+|+.++|+||++||||++|+...+..||.-
T Consensus 38 ~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa 71 (277)
T 1qqf_A 38 ELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTA 71 (277)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccccCCCCccHHHHH
Confidence 3588899999999999999999999888888763
No 8
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.30 E-value=3e-07 Score=61.83 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~ 47 (57)
+.+.+|+.++|+||++||||++|+...+..|+.-
T Consensus 54 ~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa 87 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTA 87 (310)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHH
Confidence 3588999999999999999999999888888763
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.10 E-value=1.7e-06 Score=64.36 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=32.0
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCCcccccCC
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPR 39 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~ 39 (57)
+++|.+++.+..+++|+||+++||+||||+.++..
T Consensus 100 ~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~ 134 (520)
T 3q7a_B 100 DLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPAN 134 (520)
T ss_dssp HHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTT
T ss_pred HHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 57888899999999999999999999999999843
No 10
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.04 E-value=1.5e-06 Score=61.70 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhc---------CCCCcccccCCCCcccccccCccc
Q 035428 16 FYDAVNYILSMQS---------ETGGVPAWEPRRAPSWLEVKITST 52 (57)
Q Consensus 16 l~daVd~lLsmQN---------~dGG~aafE~~r~~~~Le~lnpae 52 (57)
..++|+||++||| ++|||++|+..+.+. .++.||+|
T Consensus 69 ~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~-~d~~~~~~ 113 (377)
T 1n4q_B 69 KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPF-NPSKNPGT 113 (377)
T ss_dssp HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCC-CSSCSCCC
T ss_pred HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCCh-hhhccccc
Confidence 6789999999999 799999999987665 57777664
No 11
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=7.3e-06 Score=63.90 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
+.+.+|+++||+||++||||++|+..++..||.
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lT 904 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLT 904 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeeccCCCCCCeeeh
Confidence 358899999999999999999999989998975
No 12
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.53 E-value=3.5e-05 Score=61.59 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcCCCCcccccC----CCCccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEP----RRAPSWLE 46 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~----~r~~~~Le 46 (57)
.|.+|++|||+||++||||++|.. ..+..||.
T Consensus 984 ~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlT 1019 (1451)
T 4acq_A 984 YLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLT 1019 (1451)
T ss_dssp HHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHH
T ss_pred HHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHH
Confidence 478999999999999999999975 34777874
No 13
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.53 E-value=3.6e-05 Score=58.54 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
.+..|+.++|+||+.||||++|....+..||.
T Consensus 300 ~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlT 331 (915)
T 2hr0_B 300 LIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLT 331 (915)
T ss_dssp HHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCCCcceeh
Confidence 57889999999999999999999888888875
No 14
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=97.02 E-value=0.00025 Score=50.28 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
.+...+.+||+||++.||.||||+.=
T Consensus 188 ~~~~~v~ka~~fL~scQn~DGGfGe~ 213 (377)
T 1n4q_B 188 WSGMDMKKAISYIRRSMSYDNGLAQG 213 (377)
T ss_dssp GGGSCHHHHHHHHHHTBCTTSSBBSS
T ss_pred CChHHHHHHHHHHHHhcCCCCCCCCC
Confidence 45567899999999999999999863
No 15
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=96.79 E-value=0.00048 Score=47.69 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccC
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
..-.++|+||+++||+||||+.+.-
T Consensus 66 ~~r~~~i~~l~s~Q~~dGGF~g~~g 90 (331)
T 3dss_B 66 MNKEEILVFIKSCQHECGGVSASIG 90 (331)
T ss_dssp SCHHHHHHHHHHTBCTTSCBBSSTT
T ss_pred hhHHHHHHHHhhhcCCCCCcCCCCC
Confidence 3457899999999999999998763
No 16
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=96.61 E-value=0.00067 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 12 EPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
+...+.++|+||++.||.||||+.-.
T Consensus 160 ~~~~~~k~v~~L~s~Q~~dGGfg~~p 185 (331)
T 3dss_B 160 DAINVEKAIEFVLSCMNFDGGFGCRP 185 (331)
T ss_dssp GGSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred CHHHHHHHHHHHHHhCcCCCCcCCCC
Confidence 45568899999999999999999754
No 17
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=96.48 E-value=0.00087 Score=49.89 Aligned_cols=28 Identities=18% Similarity=0.387 Sum_probs=24.1
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 7 VGEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
+|. ++...+.+|++||++.||.||||+.
T Consensus 209 Lg~-~~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 209 LDI-ITPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HTC-CCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred cCC-CChHHHHHHHHHHHHhcCCCCCccC
Confidence 344 5677899999999999999999997
No 18
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=96.44 E-value=0.0018 Score=47.66 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~ 33 (57)
|.+...+++.+|++||+++|++||||
T Consensus 460 g~~~~~~~i~rai~~L~~~Q~~DGsw 485 (631)
T 2sqc_A 460 GYDDAWKVIRRAVEYLKREQKPDGSW 485 (631)
T ss_dssp TCCTTSHHHHHHHHHHHHHCCTTSCC
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCC
Confidence 44455678999999999999999999
No 19
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=96.24 E-value=0.0017 Score=49.03 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=29.2
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCC
Q 035428 7 VGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRA 41 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~ 41 (57)
.|..++++-....++||++.||+||||+-|.-..+
T Consensus 115 ~~~~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~~~s 149 (732)
T 1w6k_A 115 ARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKS 149 (732)
T ss_dssp HTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCC
T ss_pred hCCCCCHHHHHHHHHHHHHhcCCCCCccCCcCCCc
Confidence 46667777889999999999999999998875443
No 20
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=96.24 E-value=0.0015 Score=47.02 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=23.5
Q ss_pred HHHHHHHHHHh-hcCCCCcccccCCCC
Q 035428 16 FYDAVNYILSM-QSETGGVPAWEPRRA 41 (57)
Q Consensus 16 l~daVd~lLsm-QN~dGG~aafE~~r~ 41 (57)
..++|+||++| |+.+|||++||.+|.
T Consensus 75 ~~~hi~~l~~~lq~~~gg~~a~D~~r~ 101 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLTDAYECLDASRP 101 (437)
T ss_dssp HHHHHHHHHHHTTEECGGGGGGTTCHH
T ss_pred HHHHHHHHHHcCCCCCCCcccccCCCc
Confidence 47799999999 999999999998863
No 21
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=95.89 E-value=0.0045 Score=42.57 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
.++.+.+.+|++||++.|++||+|..
T Consensus 138 ~v~~~~i~~a~~~L~~~Q~~dG~~~~ 163 (367)
T 1hzf_A 138 GGSPEKLQETSNWLLSQQQADGSFQD 163 (367)
T ss_dssp CCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred CCCHHHHHHHHHHHHHhhccCCCccc
Confidence 35678999999999999999999964
No 22
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=95.85 E-value=0.0063 Score=39.86 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVPAWE 37 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE 37 (57)
.++++.+.+|++||++ .|++||+|....
T Consensus 85 ~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~ 113 (277)
T 1qqf_A 85 AIDSQVLCGAVKWLILEKQKPDGVFQEDG 113 (277)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence 4778899999999997 999999997644
No 23
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.77 E-value=0.0044 Score=45.97 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
.|..|+.-+|++|+.||||+.|-...+..||.
T Consensus 369 ~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLT 400 (767)
T 4fxk_B 369 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLT 400 (767)
T ss_dssp HHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHH
T ss_pred HHHHHHHHHHHhhcCCCCcccCCCCCCCchhH
Confidence 37889999999999999999998777888875
No 24
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=95.51 E-value=0.0095 Score=39.77 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVPAWE 37 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE 37 (57)
.++++.+.+|++||++ .|++||+|....
T Consensus 101 ~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~ 129 (310)
T 2wy7_A 101 AIDSQVLCGAVKWLILEKQKPDGVFQEDA 129 (310)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCccccCC
Confidence 4778899999999997 999999997644
No 25
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=94.73 E-value=0.017 Score=46.46 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~ 47 (57)
+|..|+.=+|+||+.||||+.|-...+..||.-
T Consensus 1047 ~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTA 1079 (1661)
T 2b39_A 1047 LIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTA 1079 (1661)
T ss_dssp HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCccccCCCCCchhhhH
Confidence 577899999999999999999987777888753
No 26
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=93.92 E-value=0.029 Score=45.13 Aligned_cols=32 Identities=19% Similarity=0.465 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
.+..++.-+|+||+.||||+.|....+..||.
T Consensus 1048 ~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLT 1079 (1676)
T 3cu7_A 1048 KLKEGMLSIMSYRNADYSYSVWKGGSASTWLT 1079 (1676)
T ss_dssp HHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHH
T ss_pred HHHHHHHHHhhccCCCCCccccCCCCCcEEEe
Confidence 46777888999999999999996666777875
No 27
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=92.14 E-value=0.072 Score=38.07 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcCCCCccc
Q 035428 15 RFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aa 35 (57)
....+|+||++.||-||||+.
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~ 212 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSS 212 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCS
T ss_pred cHHHHHHHHHHhcCCCCCcCC
Confidence 356799999999999999994
No 28
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=92.11 E-value=0.027 Score=46.05 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCCcccccCCCCcccccc
Q 035428 15 RFYDAVNYILSMQSETGGVPAWEPRRAPSWLEV 47 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le~ 47 (57)
.|..|+.-+|+||+.||||++|-...+..||.-
T Consensus 1031 ~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTA 1063 (1642)
T 3prx_B 1031 QIVTGYAQQMVYKKADHSYAAFTNRASSSWLTA 1063 (1642)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHhcCCCCCeecCCCCCCccccHH
Confidence 477899999999999999999987678889864
No 29
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=92.04 E-value=0.078 Score=38.44 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aa 35 (57)
+++.+||+||.+-|+.||||-.
T Consensus 314 ~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 314 QAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHHhhcCCCceee
Confidence 3799999999999999999984
No 30
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=91.19 E-value=0.1 Score=42.08 Aligned_cols=28 Identities=11% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
.+++..+.+|++||++.|+.||.|....
T Consensus 1034 ~v~~~~l~~a~~wL~~~Q~~dG~f~~~g 1061 (1451)
T 4acq_A 1034 FIDEAHITQALIWLSQRQKDNGCFRSSG 1061 (1451)
T ss_dssp CCCTHHHHHHHHHHHHTEETTTEECCCC
T ss_pred ccCHHHHHHHHHHHHhhcccCCcccccC
Confidence 4678899999999999999999997543
No 31
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=88.88 E-value=0.28 Score=37.36 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCccccc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVPAWE 37 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~aafE 37 (57)
.++++.+.+|++||++ .|+.||+|....
T Consensus 346 ~v~~~~i~~al~~L~~~~Q~~dG~f~~~~ 374 (915)
T 2hr0_B 346 AIDSQVLCGAVKWLILEKQKPDGVFQEDA 374 (915)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCBCCCS
T ss_pred CCCHHHHHHHHHHHHHhhccCCCccccCc
Confidence 4778999999999996 999999996543
No 32
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=86.52 E-value=0.3 Score=34.55 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCc
Q 035428 13 PERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~dGG~ 33 (57)
..++.+||+|||.-|-.+|||
T Consensus 168 ~~av~Rgid~Llk~Qe~dggw 188 (332)
T 1gxm_A 168 KTAVTKGTDYILKAQWKQNGV 188 (332)
T ss_dssp HHHHHHHHHHHHHHSCEETTE
T ss_pred HHHHHHHHHHHHHhhCccCCC
Confidence 468999999999999999875
No 33
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=86.36 E-value=0.54 Score=36.92 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCCccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~dGG~aa 35 (57)
|..++++.+.+|++||.+.|++||.|..
T Consensus 918 ~~~v~~~~l~~a~~~L~~~q~~dG~f~~ 945 (1325)
T 2pn5_A 918 ISDIDAAMVEKALDWLASKQHFSGRFDK 945 (1325)
T ss_dssp CSCSCHHHHHHHHHHHHHTCCTTSCCCC
T ss_pred EEcCCHHHHHHHHHHHHhhhccCCCccc
Confidence 4468889999999999999999998843
No 34
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=83.93 E-value=0.47 Score=36.39 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 035428 16 FYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aaf 36 (57)
.-.+|+|||.=|.+||+|+..
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCS
T ss_pred CHHHHHHHHhcCCCCCCCCCC
Confidence 455799999999999999974
No 35
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=83.76 E-value=0.46 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 035428 16 FYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aaf 36 (57)
.-.+|+|||.=|.+||||+.-
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~ 75 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIE 75 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCT
T ss_pred ChHHHHHHHHccCCCCCCCCC
Confidence 446799999999999999963
No 36
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=83.07 E-value=0.51 Score=36.52 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhcCCCCcccc
Q 035428 16 FYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aaf 36 (57)
.-.+|+|||.=|.+||||+.-
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~ 123 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQ 123 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCT
T ss_pred chHHHHHHHHccCCCCCCCCC
Confidence 356799999999999999963
No 37
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=82.66 E-value=0.54 Score=36.24 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCCCCccc
Q 035428 16 FYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~aa 35 (57)
.-.+|+|||.=|.+||+|+.
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~ 95 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGE 95 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSC
T ss_pred chHHHHHHHHccCCCCCCCC
Confidence 34689999999999999984
No 38
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=81.11 E-value=0.99 Score=32.66 Aligned_cols=20 Identities=5% Similarity=-0.052 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcc
Q 035428 14 ERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~a 34 (57)
.+...|+++|++ |++||+|.
T Consensus 250 w~~~~a~~~Ll~-q~~dG~F~ 269 (414)
T 2bb6_A 250 TACLKAKAALQA-SLQHKTFQ 269 (414)
T ss_dssp HHHHHHHHHHHH-HHTTTCCC
T ss_pred chHHHHHHHHHH-hccCCCCC
Confidence 366789999999 99999996
No 39
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=79.83 E-value=1.3 Score=32.12 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.6
Q ss_pred hHHHHHHH----HHHHHhhcCCCCcc
Q 035428 13 PERFYDAV----NYILSMQSETGGVP 34 (57)
Q Consensus 13 ~~rl~daV----d~lLsmQN~dGG~a 34 (57)
..++.+|+ .+|++-|++||+|+
T Consensus 201 ~~~i~~al~~l~~~l~~~Q~~dG~FG 226 (414)
T 2bb6_A 201 RNRINLALKRVQEKILKAQTPEGYFG 226 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTBCTTSCBS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence 35677777 89999999999997
No 40
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=79.76 E-value=1.3 Score=32.73 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHHhhcCCCCccccc
Q 035428 11 MEPERFYDAVNYILSMQSETGGVPAWE 37 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~dGG~aafE 37 (57)
+.++.+.+|++||++.|..||.|...-
T Consensus 416 id~~~i~~a~~wL~~~Q~~~G~f~e~g 442 (767)
T 4fxk_B 416 GSPEKLQETSNWLLSQQQADGSFQDPC 442 (767)
T ss_dssp CCHHHHHHHHHHHHHTBCTTSCBCCSS
T ss_pred cchHHHHHHHHHHHHhhhhcccchhcc
Confidence 677889999999999999999997543
No 41
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=79.28 E-value=2.3 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=21.2
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcCC
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSET 30 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~d 30 (57)
||+ .+..++++.+.+-+.||.++++.+
T Consensus 61 Mp~--~~~~ls~~ei~~l~~yl~~~~~~~ 87 (89)
T 1c6r_A 61 MPA--WSGTLDDDEIAAVAAYVYDQASGD 87 (89)
T ss_dssp BCC--CTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCC--CCCcCCHHHHHHHHHHHHHHccCC
Confidence 554 245689999999999999998754
No 42
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=78.12 E-value=1.3 Score=24.76 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhcCCC
Q 035428 16 FYDAVNYILSMQSETG 31 (57)
Q Consensus 16 l~daVd~lLsmQN~dG 31 (57)
+.+||+||++-+.+.|
T Consensus 48 ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 48 TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHhCCCccC
Confidence 7789999999888765
No 43
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.46 E-value=1.9 Score=24.15 Aligned_cols=17 Identities=6% Similarity=0.337 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhcCCC
Q 035428 15 RFYDAVNYILSMQSETG 31 (57)
Q Consensus 15 rl~daVd~lLsmQN~dG 31 (57)
.+.+|+|||++=.+...
T Consensus 46 NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 46 NIEQILDYLFAHSGPSS 62 (63)
T ss_dssp CHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHhCCCCCC
Confidence 48899999998766543
No 44
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.23 E-value=1.4 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 035428 15 RFYDAVNYILSMQSETGG 32 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG 32 (57)
.+..||+-||.|+.++||
T Consensus 47 ~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 47 AVDATIDQLLQMNLESGP 64 (67)
T ss_dssp CHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHhcCCCCCC
Confidence 478899999999998876
No 45
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=73.68 E-value=4 Score=21.52 Aligned_cols=22 Identities=9% Similarity=0.370 Sum_probs=18.5
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-+.||.+++++
T Consensus 67 ~~~ls~~ei~~l~~yl~~~~~~ 88 (91)
T 1ls9_A 67 ADRLDEDDIEAVSNYVYDQAVN 88 (91)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHhccc
Confidence 4568999999999999998873
No 46
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=73.25 E-value=2.9 Score=21.57 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=20.0
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhc
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN 28 (57)
||+ .+..++++.+.+-+.||.+++.
T Consensus 58 Mp~--~~~~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 58 MPA--FGGRLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp BCC--CTTTSCHHHHHHHHHHHHHHHH
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHhh
Confidence 554 2447999999999999999875
No 47
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.23 E-value=2.6 Score=22.17 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhcCCC
Q 035428 16 FYDAVNYILSMQSETG 31 (57)
Q Consensus 16 l~daVd~lLsmQN~dG 31 (57)
+.+||+||++.+..+-
T Consensus 38 v~~Ave~L~~~~~~~~ 53 (54)
T 2dah_A 38 VDAAVEKLRQSSGPSS 53 (54)
T ss_dssp HHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHhCCCcCC
Confidence 7789999998876543
No 48
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=69.53 E-value=0.95 Score=37.21 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCcccc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVPAW 36 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~aaf 36 (57)
.|+++.|.+|++||++ -|..||.|..-
T Consensus 1078 ~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B 1078 GISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHHHHHHhhccCCCCccccc
Confidence 3788899999999998 89999988543
No 49
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=68.54 E-value=5.4 Score=20.68 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=20.7
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcC
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~ 29 (57)
||+ .+..++++.+.+-+.||.++.++
T Consensus 65 Mp~--~~~~ls~~ei~~l~~yl~~l~~~ 90 (93)
T 3dr0_A 65 MPA--FGGRLSDADIANVAAYIADQAEN 90 (93)
T ss_dssp BCC--CBTTBCHHHHHHHHHHHHHHHHT
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHhc
Confidence 554 24679999999999999998754
No 50
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=68.52 E-value=4.3 Score=21.11 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=18.0
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-+.||.++..+
T Consensus 66 ~~~ls~~ei~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 66 NGRLSPLQIEDVAAYVVDQAEK 87 (89)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhhc
Confidence 3468899999999999988654
No 51
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=68.24 E-value=4.6 Score=21.18 Aligned_cols=22 Identities=9% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-++||.+++..
T Consensus 64 ~~~ls~~ei~~l~~yl~~~~~~ 85 (90)
T 1cyi_A 64 ADRLSEEEIQAVAEYVFKQATD 85 (90)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhcccc
Confidence 4568999999999999998874
No 52
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=68.07 E-value=4.4 Score=21.85 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHhh-cCCCCc
Q 035428 11 MEPERFYDAVNYILSMQ-SETGGV 33 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQ-N~dGG~ 33 (57)
-.+.|+..||.-+++|= +++|||
T Consensus 5 ~~D~rl~~al~qMl~MGF~negGW 28 (52)
T 1q02_A 5 EADPRLIESLSQMLSMGFSDEGGW 28 (52)
T ss_dssp TSCHHHHHHHHHHHTTTCCCTTSH
T ss_pred CcChHHHHHHHHHHHcCCCccccH
Confidence 34689999999999994 556888
No 53
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=66.84 E-value=3.7 Score=30.78 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 035428 16 FYDAVNYILSMQSETGGV 33 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG~ 33 (57)
++-++||||.||.++|++
T Consensus 196 ~rWg~D~llkm~~~~g~~ 213 (586)
T 3h7l_A 196 ALFGADFLVRMQNEKGFF 213 (586)
T ss_dssp HHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHHHHhcccCCCeE
Confidence 556789999999999874
No 54
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=66.82 E-value=4.6 Score=20.56 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=16.8
Q ss_pred CCccccCCCCChHHHHHHHHHHHHh
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSM 26 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsm 26 (57)
||+ ..++++.+.+-++||.++
T Consensus 50 Mp~----~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 50 MPG----GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp BCS----CSSCHHHHHHHHHHHHTC
T ss_pred CCC----CCCCHHHHHHHHHHHHhc
Confidence 566 468888899999998875
No 55
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=66.35 E-value=5 Score=23.14 Aligned_cols=21 Identities=10% Similarity=0.455 Sum_probs=18.3
Q ss_pred cCCCCChHHHHHHHHHHHHhh
Q 035428 7 VGEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 7 ~g~~i~~~rl~daVd~lLsmQ 27 (57)
+...++++.+.+-+.||.+++
T Consensus 116 ~~~~Ls~~ei~~l~aYl~sl~ 136 (137)
T 2c1d_B 116 LAPILNAQQIEDVVAFLVTLK 136 (137)
T ss_dssp CCCSSCHHHHHHHHHHHHTCC
T ss_pred hhcCCCHHHHHHHHHHHHHcc
Confidence 455799999999999999875
No 56
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=66.17 E-value=4.8 Score=21.36 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=17.0
Q ss_pred CCCCChHHHHHHHHHHHHhh
Q 035428 8 GEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQ 27 (57)
...++++.+.+-+.||.++|
T Consensus 80 ~~~ls~~ei~~l~~yl~sl~ 99 (99)
T 1w2l_A 80 YASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp GGGCCHHHHHHHHHHHHTCC
T ss_pred cccCCHHHHHHHHHHHHHcC
Confidence 45689999999999999875
No 57
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=64.84 E-value=3.3 Score=29.85 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhcCCCCcc
Q 035428 14 ERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~a 34 (57)
..+..++..|++-|..||+|+
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fG 203 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIG 203 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBS
T ss_pred HHHHHHHHHHHHhhcCCCccc
Confidence 457778888888899999997
No 58
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.42 E-value=4.9 Score=21.57 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 035428 15 RFYDAVNYILSMQSETGG 32 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG 32 (57)
.+..||+-||.|+.+++|
T Consensus 38 dvd~aI~~LL~m~~~~~~ 55 (59)
T 1wgl_A 38 NKDAAINSLLQMGEEPSG 55 (59)
T ss_dssp CHHHHHHHHHHSSCCCCS
T ss_pred CHHHHHHHHHcCcCCCCC
Confidence 578899999999988765
No 59
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=63.94 E-value=3.9 Score=22.07 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhcCC
Q 035428 15 RFYDAVNYILSMQSET 30 (57)
Q Consensus 15 rl~daVd~lLsmQN~d 30 (57)
.+..|++||++-+++.
T Consensus 47 nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 47 SVQTACDWLFSHSGPS 62 (64)
T ss_dssp CHHHHHHHHHSCCSCC
T ss_pred CHHHHHHHHHhCCCCC
Confidence 3778999999877653
No 60
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=63.35 E-value=4.5 Score=23.99 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHh
Q 035428 13 PERFYDAVNYILSM 26 (57)
Q Consensus 13 ~~rl~daVd~lLsm 26 (57)
..|+||++|+|.+|
T Consensus 61 rRRvYD~~NVl~a~ 74 (95)
T 1cf7_B 61 RRRVYDALNVLMAM 74 (95)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHh
Confidence 46899999999998
No 61
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.25 E-value=4.3 Score=22.87 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhcCCCC
Q 035428 16 FYDAVNYILSMQSETGG 32 (57)
Q Consensus 16 l~daVd~lLsmQN~dGG 32 (57)
+.+||+||++-+..+-|
T Consensus 58 ve~Ave~L~~~~~~~s~ 74 (74)
T 1vej_A 58 IHAAIEMLLGASGPSSG 74 (74)
T ss_dssp HHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHhCCCCCCC
Confidence 77899999988776543
No 62
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=62.69 E-value=8.3 Score=19.69 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=16.0
Q ss_pred CCChHHHHHHHHHHHHhh
Q 035428 10 KMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQ 27 (57)
.++++.+.+-+.||.++|
T Consensus 65 ~ls~~ei~~l~~yl~~l~ 82 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSLK 82 (82)
T ss_dssp SCCHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 689999999999999875
No 63
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=62.37 E-value=7.3 Score=22.70 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=16.1
Q ss_pred cccCCCCChHHH-----------HHHHHHHHHh
Q 035428 5 EIVGEKMEPERF-----------YDAVNYILSM 26 (57)
Q Consensus 5 ~~~g~~i~~~rl-----------~daVd~lLsm 26 (57)
+++|+.+++..| .+|+|.+|+-
T Consensus 43 ~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 43 EVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 467888888764 5678888864
No 64
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=61.15 E-value=7.5 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccC
Q 035428 14 ERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
+.+.++++|+++.|.++|.|++...
T Consensus 254 ~~i~~~l~~l~~~~~~~g~wp~~~~ 278 (411)
T 3e6u_A 254 SLVKPSVDYVCQLKFPSGNYPPCIG 278 (411)
T ss_dssp HTHHHHHHHHHHTCCTTSCCCSBTT
T ss_pred HHHHHHHHHHHHhhccCCCCCCCCC
Confidence 4688999999999999998987653
No 65
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=60.70 E-value=6.1 Score=32.07 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCcc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVP 34 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~a 34 (57)
.++++.|.+|++||++ -|+.||.|.
T Consensus 1093 ~v~~~~l~~a~~~L~~~~q~~~g~f~ 1118 (1661)
T 2b39_A 1093 AIDSKDLCETVKWLILEKQKPDGIFQ 1118 (1661)
T ss_dssp CCCHHHHHHHHHHHHHHTBCTTSCBC
T ss_pred cCCHHHHHHHHHHhhHhhCCCCCccc
Confidence 4788999999999996 999999885
No 66
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=60.59 E-value=10 Score=19.50 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-+.||.++.++
T Consensus 64 ~~~ls~~ei~~l~~yl~~~~~~ 85 (88)
T 3dmi_A 64 GGRLSDEEIANVAAYVLASAEA 85 (88)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhcc
Confidence 4478999999999999998743
No 67
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=59.58 E-value=5.4 Score=28.37 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhc---C-CCCcccc
Q 035428 17 YDAVNYILSMQS---E-TGGVPAW 36 (57)
Q Consensus 17 ~daVd~lLsmQN---~-dGG~aaf 36 (57)
..-++||.++|+ + ||||...
T Consensus 118 ~~i~~~l~~lQ~~~~~~dGsF~~~ 141 (390)
T 3dra_B 118 KKIMNFLCKCQVKDGINKGGFVPT 141 (390)
T ss_dssp HHHHHHHHHHBCCSSTTTTCBCSE
T ss_pred HHHHHHHHHHhCCCCCCCCceeee
Confidence 346789999998 5 8999954
No 68
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=58.42 E-value=6 Score=28.00 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-++||||.||..+|++
T Consensus 94 deikwg~D~llk~~~~~g~~ 113 (433)
T 1ks8_A 94 KAVKWATDYFIKAHTSQNEF 113 (433)
T ss_dssp HHHHHHHHHHHHHCCBTTBE
T ss_pred HHHHHHHHHHHHhccCCCcE
Confidence 34666788899999988753
No 69
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=57.91 E-value=4.8 Score=20.70 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.5
Q ss_pred CCCCChHHHHHHHHHHHHhh
Q 035428 8 GEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQ 27 (57)
...++++.+.+-+.||.+++
T Consensus 68 ~~~ls~~ei~~l~~yl~sl~ 87 (87)
T 2zxy_A 68 LKGLSDAELKALADFILSHK 87 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHhcC
Confidence 45689999999999999875
No 70
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=56.34 E-value=5 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHHHHhhcCC-CCcc
Q 035428 9 EKMEPERFYDAVNYILSMQSET-GGVP 34 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~d-GG~a 34 (57)
..++++.+.+-++||.++.... ++|+
T Consensus 103 ~~Ls~~ei~~l~~Yl~~l~~~~~~~w~ 129 (129)
T 1f1c_A 103 RNISEDDLYNVAGYILLQPKVRGEQWG 129 (129)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCCHHHHHHHHHHHHHcCccccccCC
Confidence 3689999999999999997754 4464
No 71
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=56.27 E-value=11 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=21.6
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCC
Q 035428 4 SEIVGEKMEPERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 4 ~~~~g~~i~~~rl~daVd~lLsmQN~dGG 32 (57)
|.+.+.++..+.+.+|+-.|+ ||++.-
T Consensus 2 ~~~~~~~Ltk~Ql~qal~hLi--knD~~F 28 (46)
T 2wx4_A 2 PHMADLLLNSTQFVQAFTYLI--QNDKEF 28 (46)
T ss_dssp CCGGGGSTTSHHHHHHHHHHH--HHCTTH
T ss_pred CCcccccCCHHHHHHHHHHHH--HcCHHH
Confidence 456688899999999999885 887653
No 72
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=55.43 E-value=10 Score=19.35 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=20.3
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcC
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~ 29 (57)
||+- +..++++.+.+-+.||.++.++
T Consensus 59 Mp~~--~~~ls~~ei~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 59 MPAF--KGRLTDDQIAAVAAYVLDQAEK 84 (86)
T ss_dssp BCCC--TTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCc--ccCCCHHHHHHHHHHHHHhhhc
Confidence 5542 4678999999999999998654
No 73
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=55.03 E-value=8.3 Score=31.28 Aligned_cols=25 Identities=8% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHH-hhcCCCCcc
Q 035428 10 KMEPERFYDAVNYILS-MQSETGGVP 34 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs-mQN~dGG~a 34 (57)
.++++.+.+|++||.+ -|+.||.|.
T Consensus 1094 ~v~~~~l~~a~~~L~~~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1094 EQNQNSICNSLLWLVENYQLDNGSFK 1119 (1676)
T ss_dssp CCCHHHHHHHHHHHHHHSBCTTSCBC
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCccc
Confidence 4788999999999999 999999885
No 74
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=53.98 E-value=5.7 Score=28.57 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhcCCCCcc
Q 035428 15 RFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG~a 34 (57)
+...|++||++ |.++|+|.
T Consensus 227 ~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 227 NCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp CHHHHHHHHHH-HHTTTTTC
T ss_pred cHHHHHHHHHH-HhhCCCcC
Confidence 56789999999 99999996
No 75
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=53.89 E-value=11 Score=19.29 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHHhh
Q 035428 10 KMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQ 27 (57)
.++++.+.+-+.||.+++
T Consensus 65 ~ls~~ei~~l~~yl~~lk 82 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQK 82 (82)
T ss_dssp CCCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 688999999999998763
No 76
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=51.15 E-value=17 Score=22.97 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHHHHHhhcC---------CCCccc
Q 035428 8 GEKMEPERFYDAVNYILSMQSE---------TGGVPA 35 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~---------dGG~aa 35 (57)
|+..+++-+-++|-||+|=+++ ||||.+
T Consensus 218 ~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~~a 254 (256)
T 4fs3_A 218 KRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHA 254 (256)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCHHh
Confidence 4445677899999999986553 799875
No 77
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=50.49 E-value=7 Score=19.78 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=8.5
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+||+||++
T Consensus 36 v~~Ave~L~~ 45 (46)
T 2bwb_A 36 VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 6789999985
No 78
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=50.39 E-value=11 Score=20.77 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhcCC
Q 035428 16 FYDAVNYILSMQSET 30 (57)
Q Consensus 16 l~daVd~lLsmQN~d 30 (57)
+.+||+||++=|++.
T Consensus 57 ve~Ave~L~~~~~d~ 71 (73)
T 1wiv_A 57 IEKATDWVFNNSGPS 71 (73)
T ss_dssp HHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHhCCCCC
Confidence 678999999877654
No 79
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=50.09 E-value=11 Score=27.47 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhcC-CCC
Q 035428 14 ERFYDAVNYILSMQSE-TGG 32 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~-dGG 32 (57)
+.++-++||||.||.. +|+
T Consensus 192 deikwg~D~llk~~~~~~g~ 211 (537)
T 3gzk_A 192 EVAREEIAWLLTMQDPATGG 211 (537)
T ss_dssp HHHHHHHHHHHHTBCTTTCC
T ss_pred HHHHHHHHHHHhcccCCCCe
Confidence 4567789999999984 354
No 80
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.94 E-value=10 Score=20.43 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhcCC
Q 035428 16 FYDAVNYILSMQSET 30 (57)
Q Consensus 16 l~daVd~lLsmQN~d 30 (57)
+..|++||++-+++-
T Consensus 38 ~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 38 AEEALAWLHDHCNDP 52 (64)
T ss_dssp HHHHHHHHHHHSSST
T ss_pred HHHHHHHHHhCCCCc
Confidence 677999999987753
No 81
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=49.35 E-value=8.4 Score=18.69 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+|++||++
T Consensus 32 ~e~A~~~L~~ 41 (43)
T 2g3q_A 32 LEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6789999984
No 82
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.08 E-value=8.4 Score=19.14 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+|++||++
T Consensus 36 ~e~A~~~L~~ 45 (47)
T 2ekk_A 36 MEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6789999985
No 83
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=47.83 E-value=9.4 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 035428 16 FYDAVNYILSMQ 27 (57)
Q Consensus 16 l~daVd~lLsmQ 27 (57)
+.+||+||++-+
T Consensus 40 ve~Ave~L~~~~ 51 (53)
T 2knz_A 40 INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHcC
Confidence 778999999754
No 84
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=47.78 E-value=19 Score=18.48 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 035428 9 EKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQ 27 (57)
..++++.+.+-++||.++.
T Consensus 63 ~~Ls~~ei~~l~~yl~~lk 81 (81)
T 1a56_A 63 VNVSDADAKALADWILTLK 81 (81)
T ss_dssp CSSSSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 4688999999999998863
No 85
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=46.61 E-value=9.7 Score=18.46 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHHHHhhcC
Q 035428 11 MEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQN~ 29 (57)
+++++..|=|+||++=|.+
T Consensus 6 Le~~aakdFv~WL~ngk~~ 24 (31)
T 3c5t_B 6 MEEEAVRLFIEWLKNGGPS 24 (31)
T ss_dssp HHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5678899999999977644
No 86
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=46.53 E-value=14 Score=20.56 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHhh
Q 035428 12 EPERFYDAVNYILSMQ 27 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQ 27 (57)
+..|+||.+|+|-++.
T Consensus 44 ~kRRiYDI~NVLe~ig 59 (76)
T 1cf7_A 44 QKRRIYDITNVLEGIG 59 (76)
T ss_dssp CTHHHHHHHHHHHHHT
T ss_pred cceehhhHHHHHhHhc
Confidence 5789999999998873
No 87
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.88 E-value=11 Score=20.05 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=8.7
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+||+||++
T Consensus 46 ve~Ave~L~~ 55 (58)
T 1wr1_B 46 VQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6789999986
No 88
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.69 E-value=18 Score=19.33 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 035428 15 RFYDAVNYILSMQSETGG 32 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG 32 (57)
.+.+||+.||.+...|.|
T Consensus 37 nv~~aI~~Ll~~~~~~~~ 54 (54)
T 2cp8_A 37 NILQVVTELLQLSGPSSG 54 (54)
T ss_dssp CHHHHHHHHHHHSSSCCC
T ss_pred CHHHHHHHHHhccCCCCC
Confidence 378899999999887754
No 89
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=44.24 E-value=21 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCChHHHHHHHHHHHHhh
Q 035428 10 KMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQ 27 (57)
.++++.+.+-++||.+++
T Consensus 69 ~ls~~ei~~l~~yl~~~~ 86 (87)
T 2zon_G 69 AADEATLRAAVAYMMDAA 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 688999999999998763
No 90
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.24 E-value=8.8 Score=19.46 Aligned_cols=10 Identities=40% Similarity=0.550 Sum_probs=8.6
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+||+||++
T Consensus 36 ~e~A~e~L~~ 45 (49)
T 1ify_A 36 PHRAVEYLLT 45 (49)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6789999997
No 91
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=42.11 E-value=16 Score=19.46 Aligned_cols=14 Identities=7% Similarity=0.423 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcC
Q 035428 16 FYDAVNYILSMQSE 29 (57)
Q Consensus 16 l~daVd~lLsmQN~ 29 (57)
+..|++||++=+++
T Consensus 38 ve~A~ewLl~~~~d 51 (64)
T 1whc_A 38 IEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 67899999987664
No 92
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=41.97 E-value=27 Score=18.66 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 035428 9 EKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQ 27 (57)
..++++.+.+-+.||.++|
T Consensus 82 ~~~s~~di~~l~aYl~sl~ 100 (100)
T 1qn2_A 82 GISDPKKVDDIIAYLKTKS 100 (100)
T ss_dssp CCCCHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 3457888999999998875
No 93
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=41.65 E-value=25 Score=17.99 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHHh
Q 035428 10 KMEPERFYDAVNYILSM 26 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsm 26 (57)
.++++.+.+-++||.++
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 68899999999999886
No 94
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.58 E-value=17 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcCC
Q 035428 16 FYDAVNYILSMQSET 30 (57)
Q Consensus 16 l~daVd~lLsmQN~d 30 (57)
+.+|++||++-+++.
T Consensus 38 ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 38 AEAAMNWVMSHMDDP 52 (74)
T ss_dssp HHHHHHHHHHHTTST
T ss_pred HHHHHHHHHhCCCCc
Confidence 778999999977653
No 95
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=40.98 E-value=18 Score=18.41 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhh
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQ 27 (57)
||+ . ..++++.+.+-++||.+++
T Consensus 57 Mp~-~--~~Ls~~ei~~l~~yl~~lk 79 (79)
T 2d0s_A 57 MPP-H--PQVAEADIEKIVRWVLTLK 79 (79)
T ss_dssp BCC-C--TTSCHHHHHHHHHHHTTCC
T ss_pred CCC-C--CCCCHHHHHHHHHHHHhCc
Confidence 665 2 3789999999999998763
No 96
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.86 E-value=36 Score=18.92 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=15.9
Q ss_pred CCCC-hHHHHHHHHHHHHhhc
Q 035428 9 EKME-PERFYDAVNYILSMQS 28 (57)
Q Consensus 9 ~~i~-~~rl~daVd~lLsmQN 28 (57)
++++ .|-|..|+++|..+|.
T Consensus 47 kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 47 TQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCCHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHc
Confidence 3443 4889999999999996
No 97
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=40.84 E-value=33 Score=18.18 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHhhc
Q 035428 12 EPERFYDAVNYILSMQS 28 (57)
Q Consensus 12 ~~~rl~daVd~lLsmQN 28 (57)
+++.+.+-+.||.+++|
T Consensus 87 ~~~ei~~l~aYl~sl~~ 103 (103)
T 1i54_A 87 KKGERQDLVAYLKSATS 103 (103)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 48889999999999875
No 98
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=39.42 E-value=13 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCC-cc
Q 035428 9 EKMEPERFYDAVNYILSMQSETGG-VP 34 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG-~a 34 (57)
..++++.+.+-+.||.++....++ |+
T Consensus 131 ~~Lsd~ei~~laaYl~sl~~~~~~~w~ 157 (163)
T 1w5c_T 131 RNLTEKDLVAIAGHILVEPKILGDKWG 157 (163)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CCCCHHHHHHHHHHHHHcccccCCCCC
Confidence 368999999999999999876544 76
No 99
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=39.31 E-value=18 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhcC
Q 035428 16 FYDAVNYILSMQSE 29 (57)
Q Consensus 16 l~daVd~lLsmQN~ 29 (57)
+..|++||++-+++
T Consensus 58 ~e~A~ewL~~h~~d 71 (84)
T 1vek_A 58 VEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCc
Confidence 67899999997664
No 100
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=39.05 E-value=11 Score=19.37 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=8.2
Q ss_pred HHHHHHHHHH
Q 035428 16 FYDAVNYILS 25 (57)
Q Consensus 16 l~daVd~lLs 25 (57)
+.+||+||++
T Consensus 41 ~e~A~e~L~~ 50 (52)
T 2jy5_A 41 INAAIERLLG 50 (52)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 6789999975
No 101
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=37.70 E-value=20 Score=26.41 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 035428 14 ERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG 32 (57)
+.++-+.||||.||..+|.
T Consensus 231 deikwg~D~llk~q~~~g~ 249 (609)
T 1ut9_A 231 DEARWEIEFFKKMQVTEKE 249 (609)
T ss_dssp HHHHHHHHHHHHHBCCTTT
T ss_pred HHHHHHHHHHHHhccCCCC
Confidence 4578899999999998773
No 102
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.66 E-value=15 Score=21.35 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=10.7
Q ss_pred HHHHHHHHHh--hcCC
Q 035428 17 YDAVNYILSM--QSET 30 (57)
Q Consensus 17 ~daVd~lLsm--QN~d 30 (57)
.+|||||++- ||.+
T Consensus 44 sE~VdWL~~~l~~~~~ 59 (105)
T 2ysr_A 44 GEAVDWLYDLLRNNSN 59 (105)
T ss_dssp HHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHhcccccc
Confidence 5799999986 5544
No 103
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=37.37 E-value=23 Score=18.81 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.9
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCcc
Q 035428 9 EKMEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
..++++.+.+-+.||.+++. -+|+
T Consensus 77 ~~ls~~ei~~l~~yl~~~~~--~~w~ 100 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKFQAD--QGWP 100 (105)
T ss_dssp CCBCHHHHHHHHHHHHHHHH--HTCC
T ss_pred CCCCHHHHHHHHHHHHHhhh--cCCC
Confidence 46899999999999999976 3554
No 104
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.52 E-value=26 Score=19.75 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhhcCC
Q 035428 16 FYDAVNYILSMQSET 30 (57)
Q Consensus 16 l~daVd~lLsmQN~d 30 (57)
+..|++||++-+++.
T Consensus 57 ve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 57 VPQAMEWLIEHAEDP 71 (83)
T ss_dssp HHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHCCCCc
Confidence 678999999877654
No 105
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=36.22 E-value=22 Score=19.77 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhcCC
Q 035428 16 FYDAVNYILSMQSET 30 (57)
Q Consensus 16 l~daVd~lLsmQN~d 30 (57)
+.+||+||++=|..+
T Consensus 57 ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 57 LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHCCCCC
Confidence 778999999766543
No 106
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=36.05 E-value=41 Score=18.41 Aligned_cols=19 Identities=11% Similarity=0.263 Sum_probs=16.6
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 035428 10 KMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN 28 (57)
.++++.+.+-+.||.+++.
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~~ 122 (124)
T 3cp5_A 104 ALSEEQARAILEYLRQVAE 122 (124)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 5889999999999999863
No 107
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=36.04 E-value=24 Score=25.02 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCCc
Q 035428 14 ERFYDAVNYILSMQSETGGV 33 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~ 33 (57)
+.++-++||||.||.++|++
T Consensus 96 deikwg~D~llk~~~~~~~~ 115 (441)
T 1ia6_A 96 QQLKYFTDYFLKSHPNSTTF 115 (441)
T ss_dssp HHHHHHHHHHHHTCCSTTCE
T ss_pred HHHHHHHHHHHHhccCCCcE
Confidence 34677899999998777643
No 108
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.69 E-value=25 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhcC
Q 035428 16 FYDAVNYILSMQSE 29 (57)
Q Consensus 16 l~daVd~lLsmQN~ 29 (57)
+.+|++||++=+.+
T Consensus 37 ve~A~e~L~~~~~~ 50 (63)
T 1wji_A 37 LEAALNVLLTSNKQ 50 (63)
T ss_dssp HHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHCCCC
Confidence 77899999986543
No 109
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=35.50 E-value=23 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhcCC
Q 035428 14 ERFYDAVNYILSMQSET 30 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~d 30 (57)
+.++-+.||||.||.++
T Consensus 236 deikwg~Dyllk~q~~~ 252 (639)
T 1clc_A 236 DELKYEIDWILTMQYPD 252 (639)
T ss_dssp HHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 45777899999999965
No 110
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=35.40 E-value=36 Score=18.57 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=16.1
Q ss_pred CCCChHHHHHHHHHHHHhhc
Q 035428 9 EKMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN 28 (57)
..++++.+.+-+.||.++++
T Consensus 95 ~~ls~~ei~~l~aYl~sl~~ 114 (114)
T 2w9k_A 95 GMKKPQERADVIAYLETLKG 114 (114)
T ss_dssp CCCCHHHHHHHHHHHHTCCC
T ss_pred ccCCHHHHHHHHHHHHHccC
Confidence 34678889999999998863
No 111
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=34.09 E-value=30 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.460 Sum_probs=19.3
Q ss_pred CCCCChHHHHHHHHHHHHhhcCC
Q 035428 8 GEKMEPERFYDAVNYILSMQSET 30 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~d 30 (57)
+..++++.+.+-+.||.+++...
T Consensus 113 ~~~Lsd~ei~~laaYl~sl~~~~ 135 (172)
T 2c8s_A 113 NENLTPDEMLQTIAWIRHLYTGP 135 (172)
T ss_dssp CCCSCHHHHHHHHHHHHHTCCSC
T ss_pred CCCCCHHHHHHHHHHHHHhccCC
Confidence 44689999999999999987654
No 112
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=33.69 E-value=38 Score=23.28 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcCCCCccc
Q 035428 14 ERFYDAVNYILSMQSETGGVPA 35 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG~aa 35 (57)
+.+.+-++.++..|++||-|-.
T Consensus 263 ~~~~~~a~~~~~~q~~~G~W~~ 284 (382)
T 3pmm_A 263 TVLDAQIAALAECQDDSGLWHT 284 (382)
T ss_dssp HHHHHHHHHHHHHCCTTSCEES
T ss_pred HHHHHHHHHHHHcCCCCCChhh
Confidence 4577888999999999998873
No 113
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=33.65 E-value=35 Score=17.98 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=14.1
Q ss_pred CCChHHHHHHHHHHHH
Q 035428 10 KMEPERFYDAVNYILS 25 (57)
Q Consensus 10 ~i~~~rl~daVd~lLs 25 (57)
.++++.+.+.++||++
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6899999999999975
No 114
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=33.64 E-value=28 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=16.7
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 035428 9 EKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQ 27 (57)
..++++.+.+-+.||.+++
T Consensus 119 ~~Ls~~ei~~l~aYl~sl~ 137 (138)
T 1h32_B 119 PLMTAGQIEDVVAYLMTLT 137 (138)
T ss_dssp CSSCHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHhcC
Confidence 3689999999999999875
No 115
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=32.88 E-value=51 Score=17.35 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCCC-hHHHHHHHHHHHHhhc
Q 035428 8 GEKME-PERFYDAVNYILSMQS 28 (57)
Q Consensus 8 g~~i~-~~rl~daVd~lLsmQN 28 (57)
+++++ .+-|..|+++|-.+|.
T Consensus 34 ~~klSKi~tLr~Ai~YI~~L~~ 55 (60)
T 2ql2_B 34 TQKLSKIETLRLAKNYIWALSE 55 (60)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHHHHH
Confidence 44444 4789999999999985
No 116
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=32.88 E-value=18 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=23.9
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 4 SEIVGEKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 4 ~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
+.||-...+.++.-.=...+|.+|.+-|+|+.|
T Consensus 83 ~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~y 115 (183)
T 2ofk_A 83 TGIIRHRGKIQAIISNARAWLAMEQNGESFADF 115 (183)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 445555555566555567889999999999977
No 117
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=32.81 E-value=31 Score=18.54 Aligned_cols=18 Identities=17% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHHHHHhh
Q 035428 10 KMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQ 27 (57)
.++++.+.+-+.||.++|
T Consensus 89 ~~~~~ei~~l~aYl~sl~ 106 (106)
T 1hro_A 89 QPDPQKRADIIAYLETLK 106 (106)
T ss_dssp CCCHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 346788888999988765
No 118
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=32.80 E-value=54 Score=16.82 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=17.4
Q ss_pred CCCChHHHHHHHHHHHHhhcC
Q 035428 9 EKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~ 29 (57)
..++++.+.+-++||.+++-.
T Consensus 56 ~~ls~~ei~~l~~yl~~~~~~ 76 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLPAP 76 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHHHHHHHHHHCcCC
Confidence 468899999999999988643
No 119
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.62 E-value=19 Score=18.91 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhcC
Q 035428 16 FYDAVNYILSMQSE 29 (57)
Q Consensus 16 l~daVd~lLsmQN~ 29 (57)
+.+|++||++=+++
T Consensus 37 ve~A~e~L~~~~~d 50 (63)
T 2dak_A 37 LERAVDWIFSHIDD 50 (63)
T ss_dssp SHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCC
Confidence 67899999986654
No 120
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=32.46 E-value=56 Score=17.64 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHHhh
Q 035428 10 KMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQ 27 (57)
.++++.+.+-+.||.+++
T Consensus 94 ~ls~~ei~~l~aYl~~l~ 111 (112)
T 1ccr_A 94 LXKPQERADLISYLKEAT 111 (112)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 458889999999999886
No 121
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=31.21 E-value=35 Score=19.79 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCcc
Q 035428 10 KMEPERFYDAVNYILSMQSETGGVP 34 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG~a 34 (57)
.++++.+.+-+.||+++....-||+
T Consensus 106 ~Lsd~ei~~laaYl~~~~~~~~~w~ 130 (135)
T 1e29_A 106 NYTEDDIFDVAGYTLIAPKLDERWG 130 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCTTSC
T ss_pred cCCHHHHHHHHHHHHhccCcCCCCC
Confidence 4789999999999999977666887
No 122
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=31.11 E-value=34 Score=18.27 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 035428 15 RFYDAVNYILSMQSETGG 32 (57)
Q Consensus 15 rl~daVd~lLsmQN~dGG 32 (57)
.|.+||. ||||-..+.
T Consensus 29 dLrrAiq--LSmQGss~~ 44 (52)
T 2klz_A 29 DLRRAIQ--LSMQGSSRN 44 (52)
T ss_dssp HHHHHHH--HHHTTCCSC
T ss_pred HHHHHHH--HHhhccccc
Confidence 7888875 899976653
No 123
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=30.82 E-value=31 Score=21.84 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=21.3
Q ss_pred CCCCChHHHHHHHHHHHHhhc---------CCCCcccc
Q 035428 8 GEKMEPERFYDAVNYILSMQS---------ETGGVPAW 36 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN---------~dGG~aaf 36 (57)
|+..+++.+-++|-+|+|=.+ -|||+..|
T Consensus 242 ~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~y 279 (279)
T 3sju_A 242 GRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGLGNY 279 (279)
T ss_dssp SSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCccCC
Confidence 455678889999999987432 46888765
No 124
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=30.07 E-value=61 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.505 Sum_probs=18.9
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-+.||.+++..
T Consensus 107 ~~~Ls~~ei~~l~aYl~sl~~~ 128 (170)
T 2d0w_A 107 GQDLELDNMLKLIAWIRHIQKD 128 (170)
T ss_dssp TTTSCHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHcccC
Confidence 4568999999999999999854
No 125
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.69 E-value=33 Score=19.58 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhc
Q 035428 16 FYDAVNYILSMQS 28 (57)
Q Consensus 16 l~daVd~lLsmQN 28 (57)
+.+|++||++=|.
T Consensus 57 ve~A~e~L~sh~~ 69 (83)
T 1veg_A 57 VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCCC
Confidence 7789999998766
No 126
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=29.59 E-value=49 Score=16.88 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=16.7
Q ss_pred CCccccCCCCChHHHHHHHHHHHH
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILS 25 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLs 25 (57)
||+- +..++++.+.+-+.||.+
T Consensus 55 Mp~~--~~~Lsd~ei~~l~~yi~~ 76 (78)
T 1gks_A 55 MPAY--DGRADREDLVKAIEYMLS 76 (78)
T ss_dssp BCCC--BTTBCHHHHHHHHHHHHT
T ss_pred CCCC--CCCCCHHHHHHHHHHHHh
Confidence 5542 456889999999999876
No 127
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=28.95 E-value=23 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCC-cc
Q 035428 10 KMEPERFYDAVNYILSMQSETGG-VP 34 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN~dGG-~a 34 (57)
.++++.+.+-+.||.++.-..++ |+
T Consensus 106 ~Lsd~ei~alaaYl~~~~~~~~~~w~ 131 (137)
T 1mz4_A 106 NLTEKDLVAIAGHILVEPKILGDKWG 131 (137)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHHHccccCCcccc
Confidence 48899999999999998765444 65
No 128
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=28.90 E-value=46 Score=17.98 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=20.2
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcC
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~ 29 (57)
.++-+|++.+.|..+|+-++..+..
T Consensus 107 ~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 107 DFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999887553
No 129
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=28.73 E-value=35 Score=17.64 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=17.0
Q ss_pred CCCChHHHHHHHHHHHHhhc
Q 035428 9 EKMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN 28 (57)
..++++.+.+-++||.+++-
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPA 84 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCT
T ss_pred hhCCHHHHHHHHHHHHhCCc
Confidence 46899999999999998763
No 130
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=28.04 E-value=29 Score=20.68 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=9.1
Q ss_pred HHHHHHHHHHH
Q 035428 15 RFYDAVNYILS 25 (57)
Q Consensus 15 rl~daVd~lLs 25 (57)
.+.+||+||++
T Consensus 103 d~erAlewL~~ 113 (118)
T 4ae4_A 103 DQDNALEDLMA 113 (118)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 46789999986
No 131
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=28.03 E-value=61 Score=17.39 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 035428 10 KMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN 28 (57)
.++++.+.+-+.||.+++.
T Consensus 84 l~s~~ei~~l~aYl~sl~~ 102 (107)
T 1co6_A 84 VKDEQKVSDLIAYIKQFNA 102 (107)
T ss_dssp CCCHHHHHHHHHHHHTBCT
T ss_pred CCCHHHHHHHHHHHHHccc
Confidence 3478889999999998864
No 132
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.87 E-value=50 Score=17.41 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=20.4
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCC
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dGG 32 (57)
.++-+|++.+.|..+|+-+|.-....++
T Consensus 101 ~~l~KP~~~~~l~~~i~~~l~~~~~~~~ 128 (133)
T 3nhm_A 101 AYLVKPVKPPVLIAQLHALLARAEAEGH 128 (133)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHC----
T ss_pred eEEeccCCHHHHHHHHHHHHhhhcccCC
Confidence 3567899999999999999976655433
No 133
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=27.74 E-value=20 Score=16.95 Aligned_cols=17 Identities=6% Similarity=0.227 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHHhh
Q 035428 11 MEPERFYDAVNYILSMQ 27 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQ 27 (57)
++.++..+=|+||++-|
T Consensus 14 L~~~~ak~Fv~wL~~~~ 30 (31)
T 3iol_B 14 LEGQAAKEFIAWLVKGR 30 (31)
T ss_dssp HHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHccC
Confidence 56778999999998754
No 134
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=27.19 E-value=48 Score=21.56 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHHHHHHhhcC---------CCCccc
Q 035428 9 EKMEPERFYDAVNYILSMQSE---------TGGVPA 35 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQN~---------dGG~aa 35 (57)
+.-+++-+-++|-||+|=+++ ||||.|
T Consensus 218 R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~~A 253 (255)
T 4g81_D 218 RWGRPEELIGTAIFLSSKASDYINGQIIYVDGGWLA 253 (255)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCeEe
Confidence 344567788899999986553 688865
No 135
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=25.92 E-value=79 Score=16.83 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=14.3
Q ss_pred CChHHHHHHHHHHHHhh
Q 035428 11 MEPERFYDAVNYILSMQ 27 (57)
Q Consensus 11 i~~~rl~daVd~lLsmQ 27 (57)
++++.+.+-+.||.+++
T Consensus 91 ~s~~ei~~l~aYl~sl~ 107 (108)
T 1ycc_A 91 KKEKDRNDLITYLKKAC 107 (108)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 47888999999999874
No 136
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=25.83 E-value=97 Score=18.97 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHHHhhc---------CCCCcccccCCC
Q 035428 8 GEKMEPERFYDAVNYILSMQS---------ETGGVPAWEPRR 40 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN---------~dGG~aafE~~r 40 (57)
+...+.+.+-++|-+|++=++ -||||..+-...
T Consensus 219 ~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~~~~~~ 260 (266)
T 3oig_A 219 RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHITARLE 260 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCCCC
T ss_pred CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeEEeeecC
Confidence 455678889999999998644 368888765543
No 137
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=25.83 E-value=73 Score=16.13 Aligned_cols=17 Identities=12% Similarity=0.301 Sum_probs=15.0
Q ss_pred CCChHHHHHHHHHHHHh
Q 035428 10 KMEPERFYDAVNYILSM 26 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsm 26 (57)
.++++.+.+-+.||.++
T Consensus 67 ~ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 67 MIPPADALKIGEYVVAS 83 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999999875
No 138
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*
Probab=25.26 E-value=88 Score=19.97 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=25.9
Q ss_pred CCCCChHHHHHHHHHHHHhhc---------CCCCcccccCCCCcccccccC
Q 035428 8 GEKMEPERFYDAVNYILSMQS---------ETGGVPAWEPRRAPSWLEVKI 49 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN---------~dGG~aafE~~r~~~~Le~ln 49 (57)
+...+++.+-++|-||+|=++ -|||+.....-....-+..|+
T Consensus 258 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~ 308 (315)
T 2o2s_A 258 RRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGLHAMGQAVDSRSMPPLQ 308 (315)
T ss_dssp CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGCSSCSSCTTSCC--
T ss_pred CCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCeeeeccCCCcccchhhh
Confidence 445678889999999998443 368887654333333344333
No 139
>1dow_B Beta-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus}
Probab=25.23 E-value=46 Score=16.15 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhhcCC
Q 035428 13 PERFYDAVNYILSMQSET 30 (57)
Q Consensus 13 ~~rl~daVd~lLsmQN~d 30 (57)
.+-|..||=-|+++|++.
T Consensus 12 sq~Lk~avv~LinyQDda 29 (32)
T 1dow_B 12 SQMLKHAVVNLINYQDDA 29 (32)
T ss_dssp HHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHhccccc
Confidence 456889999999999863
No 140
>2grg_A Hypothetical protein; YNR034W-AP; helix/beta strand protein, structural genomics, PSI, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: d.110.10.1
Probab=24.95 E-value=19 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.127 Sum_probs=27.2
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCCcccccC
Q 035428 4 SEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEP 38 (57)
Q Consensus 4 ~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~ 38 (57)
+..||+.|..+|+.|.++. =.++-++-||+-||-
T Consensus 51 ssGIgk~i~k~rVeDIv~l-S~veLd~eGyaV~eD 84 (120)
T 2grg_A 51 TSGVAKVIEKSPIAEIIRK-SNAELGRLGYSVYED 84 (120)
T ss_dssp EEEGGGTSCCTTHHHHHHH-HHHHCSSEEEEEEEC
T ss_pred ccccccccccchHHHHHHH-hhhhhcccceeEEec
Confidence 4678999999999999983 346778888888874
No 141
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=24.84 E-value=99 Score=17.71 Aligned_cols=22 Identities=0% Similarity=0.132 Sum_probs=18.6
Q ss_pred CCCCChHHHHHHHHHHHHhhcC
Q 035428 8 GEKMEPERFYDAVNYILSMQSE 29 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN~ 29 (57)
+..++++.+.+-+.||.+++..
T Consensus 105 ~~~ls~~ei~~l~~Yl~~l~~~ 126 (147)
T 2gc4_D 105 WGSLTLDEMLRTMAWVRHLYTG 126 (147)
T ss_dssp TTTSCHHHHHHHHHHHHHTCCS
T ss_pred CCCCCHHHHHHHHHHHHHhccC
Confidence 3568999999999999998754
No 142
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=24.83 E-value=53 Score=16.89 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=14.3
Q ss_pred CCChHHHHHHHHHHHHh
Q 035428 10 KMEPERFYDAVNYILSM 26 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsm 26 (57)
.++++.+.+-++||.++
T Consensus 64 ~Lsd~ei~~l~~Yi~~~ 80 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSKA 80 (81)
T ss_dssp SCCHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 68899999999998764
No 143
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.61 E-value=39 Score=24.22 Aligned_cols=44 Identities=20% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCccccCCCCChHHHHHHHHHHHHhhcCCCCcccccCCCCccccc
Q 035428 2 MPSEIVGEKMEPERFYDAVNYILSMQSETGGVPAWEPRRAPSWLE 46 (57)
Q Consensus 2 ~~~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aafE~~r~~~~Le 46 (57)
||.+--+++.=.+.+.+-++.++..|.++|.|-. -.+....++|
T Consensus 282 lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~-vld~~~~y~E 325 (445)
T 3k11_A 282 LPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQ-LLDCNDSYLE 325 (445)
T ss_dssp SCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEES-BTTCTTSCEE
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCCCchhh-ccCCCCCCCC
No 144
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=24.55 E-value=40 Score=24.18 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 035428 14 ERFYDAVNYILSMQSETGG 32 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dGG 32 (57)
+.++-++||||.|+..+|+
T Consensus 116 deikwg~D~llk~~~~~~~ 134 (466)
T 2xfg_A 116 NNIKWACDYFIKCHPEKDV 134 (466)
T ss_dssp HHHHHHHHHHHHTCSBTTE
T ss_pred HHHHHHHHHHHHhccCCCc
Confidence 3467789999999877654
No 145
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.37 E-value=61 Score=17.34 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 035428 16 FYDAVNYILSMQ 27 (57)
Q Consensus 16 l~daVd~lLsmQ 27 (57)
|..|++||+.|=
T Consensus 38 le~AmewL~k~~ 49 (54)
T 2cos_A 38 IEAALEYISKMS 49 (54)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 888999999874
No 146
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=24.15 E-value=47 Score=17.11 Aligned_cols=23 Identities=9% Similarity=0.362 Sum_probs=18.7
Q ss_pred cccCCCCChHHHHHHHHHHHHhh
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQ 27 (57)
.++-+|++.+.|..+|+-++.++
T Consensus 104 ~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 104 EYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EEEESSCCHHHHHHHHHHHHCCC
T ss_pred hheeCCCCHHHHHHHHHHHHcCC
Confidence 45678999999999999887654
No 147
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=24.02 E-value=47 Score=17.57 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 035428 9 EKMEPERFYDAVNYILSMQ 27 (57)
Q Consensus 9 ~~i~~~rl~daVd~lLsmQ 27 (57)
..++++.+.+-++||.+++
T Consensus 85 ~~ls~~ei~~l~~yl~~l~ 103 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSSLK 103 (103)
T ss_dssp TTCCHHHHHHHHHHHHHC-
T ss_pred hhCCHHHHHHHHHHHHhCC
Confidence 4688888999999998764
No 148
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=23.90 E-value=41 Score=20.01 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhh
Q 035428 16 FYDAVNYILSMQ 27 (57)
Q Consensus 16 l~daVd~lLsmQ 27 (57)
+.+||+||++..
T Consensus 95 ve~AVe~L~~~~ 106 (108)
T 2cwb_A 95 IQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC
Confidence 678999999753
No 149
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=23.80 E-value=88 Score=20.17 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=19.4
Q ss_pred CCCCChHHHHHHHHHHHHh-----hc--CCCCccc
Q 035428 8 GEKMEPERFYDAVNYILSM-----QS--ETGGVPA 35 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsm-----QN--~dGG~aa 35 (57)
|+.-+++-+-++|-||+|= |+ -|||+++
T Consensus 197 ~R~g~pediA~~v~fL~s~~~iTG~~i~VDGG~s~ 231 (247)
T 3ged_A 197 GKVGTPKDISNMVLFLCQQDFITGETIIVDGGMSK 231 (247)
T ss_dssp SSCBCHHHHHHHHHHHHHCSSCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHHhCCCCCCCeEEECcCHHH
Confidence 4445678899999999971 00 2588875
No 150
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=23.79 E-value=15 Score=23.14 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHH---H-hhcCCCC--------cccccCC-CCcccccccCcccccc
Q 035428 18 DAVNYIL---S-MQSETGG--------VPAWEPR-RAPSWLEVKITSTYTK 55 (57)
Q Consensus 18 daVd~lL---s-mQN~dGG--------~aafE~~-r~~~~Le~lnpae~f~ 55 (57)
+=+++++ . -..++|| |+-|.+. |+.. +.++|.++.+
T Consensus 19 qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~--~lISp~Dl~~ 67 (169)
T 1u5t_B 19 EIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGT--GLISPMEMRE 67 (169)
T ss_dssp HHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSS--CCCCHHHHHH
T ss_pred HHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCC--CccCHHHHHH
Confidence 4467788 4 5668899 8899888 7422 6888887754
No 151
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.74 E-value=47 Score=17.83 Aligned_cols=27 Identities=4% Similarity=0.142 Sum_probs=21.2
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCC
Q 035428 5 EIVGEKMEPERFYDAVNYILSMQSETG 31 (57)
Q Consensus 5 ~~~g~~i~~~rl~daVd~lLsmQN~dG 31 (57)
.++-+|++.+.|..+|+-++..+...+
T Consensus 106 ~~l~KP~~~~~l~~~i~~~~~~~~~~~ 132 (143)
T 2qv0_A 106 DYILKPYQESRIINMLQKLTTAWEQQN 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHHHC-
T ss_pred eEEeCCCCHHHHHHHHHHHHHHHHhcc
Confidence 456789999999999999888765443
No 152
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=23.12 E-value=58 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.5
Q ss_pred CCCChH---HHHHHHHHHHHh
Q 035428 9 EKMEPE---RFYDAVNYILSM 26 (57)
Q Consensus 9 ~~i~~~---rl~daVd~lLsm 26 (57)
+|+.++ +|.+-+|||||.
T Consensus 59 EPl~~ekK~~WrrEmdwLLsv 79 (365)
T 2ntx_A 59 QPMPQDRQARWKKEIDWLLSV 79 (365)
T ss_dssp CCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCChHHHHHHHHhcceeeec
Confidence 456665 699999999995
No 153
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=22.85 E-value=33 Score=21.18 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhh
Q 035428 16 FYDAVNYILSMQ 27 (57)
Q Consensus 16 l~daVd~lLsmQ 27 (57)
=.-||||||+..
T Consensus 104 RATaaNWLL~~~ 115 (120)
T 2l1n_A 104 RATMTNWLLAYR 115 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345799999973
No 154
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=22.80 E-value=35 Score=20.17 Aligned_cols=9 Identities=22% Similarity=0.552 Sum_probs=7.9
Q ss_pred HHHHHHHHH
Q 035428 17 YDAVNYILS 25 (57)
Q Consensus 17 ~daVd~lLs 25 (57)
.++||||+.
T Consensus 41 sdlVdWL~~ 49 (120)
T 1v3f_A 41 SSLVDWLIS 49 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 589999986
No 155
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=22.66 E-value=50 Score=24.40 Aligned_cols=18 Identities=6% Similarity=0.213 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 035428 14 ERFYDAVNYILSMQSETG 31 (57)
Q Consensus 14 ~rl~daVd~lLsmQN~dG 31 (57)
+.++-+.||||.||..+|
T Consensus 95 deikwg~Dyllk~~~~~~ 112 (605)
T 1tf4_A 95 DNLRWVNDYFIKAHPSPN 112 (605)
T ss_dssp HHHHHHHHHHHHTCSBTT
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 346778999999998754
No 156
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=22.52 E-value=29 Score=16.02 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=6.4
Q ss_pred HHHHHHHHH
Q 035428 16 FYDAVNYIL 24 (57)
Q Consensus 16 l~daVd~lL 24 (57)
+.+|++||+
T Consensus 32 ~e~A~~~L~ 40 (40)
T 1z96_A 32 LDVAASFLL 40 (40)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 667888874
No 157
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=22.33 E-value=39 Score=17.42 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhc
Q 035428 16 FYDAVNYILSMQS 28 (57)
Q Consensus 16 l~daVd~lLsmQN 28 (57)
+.+||+.||.|..
T Consensus 34 ~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 34 LDLTIGLLLKEND 46 (49)
T ss_dssp SHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccc
Confidence 5679999999943
No 158
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=21.39 E-value=69 Score=22.72 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHh-hcCCCCcccccCCCCccccccc
Q 035428 13 PERFYDAVNYILSM-QSETGGVPAWEPRRAPSWLEVK 48 (57)
Q Consensus 13 ~~rl~daVd~lLsm-QN~dGG~aafE~~r~~~~Le~l 48 (57)
++-|.+|-+|=+|+ |+.++-...|-..|.+.+ +.+
T Consensus 89 ~eLW~~A~~WR~Sr~~~a~~~~~~Fa~~R~~nt-~fv 124 (330)
T 1nh1_A 89 EELWGRATEWRLSKLQRGEPLYSAFASERTSDT-DAV 124 (330)
T ss_dssp HHHHHHHHHHHHHTSCTTCTTHHHHTSBCCTTS-CCE
T ss_pred HHHHHHHHHHHHhhhcccCcchHHhcCccCCCc-ccc
Confidence 47799999999998 877888888988887776 444
No 159
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=21.28 E-value=21 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=23.3
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCCcccc
Q 035428 4 SEIVGEKMEPERFYDAVNYILSMQSETGGVPAW 36 (57)
Q Consensus 4 ~~~~g~~i~~~rl~daVd~lLsmQN~dGG~aaf 36 (57)
+.||-...+.++.-.-...+|.+|-+-|+|+.|
T Consensus 83 ~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~y 115 (186)
T 2jg6_A 83 PNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKF 115 (186)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 445555555555555557889999999999877
No 160
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=21.20 E-value=44 Score=19.24 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=7.9
Q ss_pred HHHHHHHHHh
Q 035428 17 YDAVNYILSM 26 (57)
Q Consensus 17 ~daVd~lLsm 26 (57)
.++|+||+.-
T Consensus 54 ~dlVdWL~~~ 63 (105)
T 1fsh_A 54 ADVVDWLYTH 63 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5789999853
No 161
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.19 E-value=49 Score=18.65 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhcC
Q 035428 16 FYDAVNYILSMQSE 29 (57)
Q Consensus 16 l~daVd~lLsmQN~ 29 (57)
+.+|++||++=+.+
T Consensus 49 ~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 49 LDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHCcCC
Confidence 77899999986554
No 162
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=20.90 E-value=94 Score=19.54 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.0
Q ss_pred CCCCChHHHHHHHHHHHHhhc
Q 035428 8 GEKMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 8 g~~i~~~rl~daVd~lLsmQN 28 (57)
|...+++.+-++|-||+|-++
T Consensus 235 ~r~~~pedvA~~v~fL~s~~~ 255 (271)
T 3v2g_A 235 GSYGEPQDIAGLVAWLAGPQG 255 (271)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCHHHHHHHHHHHhCccc
Confidence 445677889999999997544
No 163
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=20.36 E-value=1.1e+02 Score=16.05 Aligned_cols=19 Identities=5% Similarity=0.216 Sum_probs=16.8
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 035428 10 KMEPERFYDAVNYILSMQS 28 (57)
Q Consensus 10 ~i~~~rl~daVd~lLsmQN 28 (57)
.++++.+.+-+.||.+++.
T Consensus 80 ~Ls~~ei~~l~~yl~~~~~ 98 (110)
T 2l4d_A 80 RLGDAEVSALISYLEEETA 98 (110)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccc
Confidence 3899999999999999864
Done!