Query 035431
Match_columns 65
No_of_seqs 113 out of 190
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 04:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035431.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035431hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c7na1 g.39.1.15 (A:18-73) Ra 55.8 2.5 0.00018 23.3 1.5 18 40-57 7-27 (56)
2 d1xu2r_ g.24.1.2 (R:) Tumor ne 41.9 4.3 0.00031 20.6 0.9 19 10-28 17-35 (36)
3 d1jv2b5 g.3.11.6 (B:563-605) I 38.9 4.4 0.00032 20.9 0.7 19 31-49 21-40 (43)
4 d2h9ec1 g.22.1.1 (C:6-83) Anti 23.6 5 0.00037 21.9 -0.9 49 4-54 8-70 (78)
5 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 21.2 1.4 0.0001 23.5 -3.5 34 5-42 12-45 (60)
6 d1kloa3 g.3.11.2 (A:122-172) L 20.8 14 0.001 18.6 0.6 13 34-46 1-13 (51)
7 d2heyr3 g.24.1.1 (R:29-82) Tum 20.1 7.3 0.00053 20.3 -0.6 12 28-42 12-23 (54)
8 d2aepa1 b.68.1.1 (A:83-469) In 18.7 7.9 0.00058 28.0 -0.9 17 38-55 186-202 (387)
9 d1f8ea_ b.68.1.1 (A:) Influenz 15.7 10 0.00075 27.4 -0.9 17 38-55 188-204 (388)
10 d1gl0i_ g.4.1.1 (I:) Protease 15.7 11 0.00082 18.4 -0.5 13 31-43 12-24 (32)
No 1
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.76 E-value=2.5 Score=23.27 Aligned_cols=18 Identities=22% Similarity=0.632 Sum_probs=14.3
Q ss_pred CCCC---CcCCchhHHhhhhh
Q 035431 40 GTAG---NRELCGSCYTDMTT 57 (65)
Q Consensus 40 GT~G---nk~~Cp~CY~~m~t 57 (65)
|+|| +...|-.||+++..
T Consensus 7 GFyG~~~~~g~CSkCyr~~~~ 27 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEYH 27 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHHH
Confidence 6777 56899999999853
No 2
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.86 E-value=4.3 Score=20.55 Aligned_cols=19 Identities=42% Similarity=1.041 Sum_probs=16.8
Q ss_pred HhHHHhcCCCCChHHHHHh
Q 035431 10 CKQRCSLHSRPNLCNRACG 28 (65)
Q Consensus 10 C~~RCs~~~~~~~C~~~C~ 28 (65)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7789999888999999986
No 3
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.92 E-value=4.4 Score=20.94 Aligned_cols=19 Identities=42% Similarity=1.151 Sum_probs=14.5
Q ss_pred cCcccccCCCCCCCc-CCch
Q 035431 31 CVRCKCVPPGTAGNR-ELCG 49 (65)
Q Consensus 31 C~~C~CVP~GT~Gnk-~~Cp 49 (65)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888844 6675
No 4
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=23.58 E-value=5 Score=21.86 Aligned_cols=49 Identities=22% Similarity=0.497 Sum_probs=20.1
Q ss_pred CcchH-HHhHHHhcCCCCChHHHHHhh------hcCcccccCCCCCCCc-------CCchhHHhh
Q 035431 4 LDCGG-LCKQRCSLHSRPNLCNRACGT------CCVRCKCVPPGTAGNR-------ELCGSCYTD 54 (65)
Q Consensus 4 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GT~Gnk-------~~Cp~CY~~ 54 (65)
.+|++ .|..-|+.-.....|...++. |=.-|.| |+|++-|. ++|| |+-+
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~Cp-C~~~ 70 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCE-LDNM 70 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHG-GGGE
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCC-cccC
Confidence 35665 477777765555555555543 3355777 89998654 3575 7644
No 5
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=21.24 E-value=1.4 Score=23.46 Aligned_cols=34 Identities=32% Similarity=0.946 Sum_probs=24.2
Q ss_pred cchHHHhHHHhcCCCCChHHHHHhhhcCcccccCCCCC
Q 035431 5 DCGGLCKQRCSLHSRPNLCNRACGTCCVRCKCVPPGTA 42 (65)
Q Consensus 5 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~ 42 (65)
.|+++|..-|+.-.....|.+.|- .-|.| |+|+.
T Consensus 12 ~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 12 TCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp SSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred cccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 577888888887666666766443 55777 88886
No 6
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.77 E-value=14 Score=18.59 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.5
Q ss_pred ccccCCCCCCCcC
Q 035431 34 CKCVPPGTAGNRE 46 (65)
Q Consensus 34 C~CVP~GT~Gnk~ 46 (65)
|+|-|.||.++..
T Consensus 1 C~C~~~Gs~~~~~ 13 (51)
T d1kloa3 1 CACNPYGTVQQQS 13 (51)
T ss_dssp CCCCTTTBGGGCC
T ss_pred CcCCCCcccCCCC
Confidence 6788888876543
No 7
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.05 E-value=7.3 Score=20.26 Aligned_cols=12 Identities=42% Similarity=1.306 Sum_probs=7.9
Q ss_pred hhhcCcccccCCCCC
Q 035431 28 GTCCVRCKCVPPGTA 42 (65)
Q Consensus 28 ~~CC~~C~CVP~GT~ 42 (65)
|.||.+| |||||
T Consensus 12 g~CC~~C---~pG~~ 23 (54)
T d2heyr3 12 DRCCHEC---RPGNG 23 (54)
T ss_dssp TEEEECB---CTTEE
T ss_pred CeECCCC---CCCCe
Confidence 4566665 77876
No 8
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=18.74 E-value=7.9 Score=28.00 Aligned_cols=17 Identities=41% Similarity=0.788 Sum_probs=14.4
Q ss_pred CCCCCCCcCCchhHHhhh
Q 035431 38 PPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~m 55 (65)
++|+.++.||| +||.+.
T Consensus 186 l~g~~~HiEEC-SCYp~~ 202 (387)
T d2aepa1 186 LSGSAQHVEEC-SCYPRY 202 (387)
T ss_dssp CCSSCCCCEEE-EEEEET
T ss_pred cCCCcCceEee-eecCCC
Confidence 67889999999 599775
No 9
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=15.73 E-value=10 Score=27.37 Aligned_cols=17 Identities=47% Similarity=0.802 Sum_probs=14.0
Q ss_pred CCCCCCCcCCchhHHhhh
Q 035431 38 PPGTAGNRELCGSCYTDM 55 (65)
Q Consensus 38 P~GT~Gnk~~Cp~CY~~m 55 (65)
++|+.++.||| +||.+.
T Consensus 188 l~g~~~HiEEC-SCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEEC-SCYGER 204 (388)
T ss_dssp CCSSCCCCEEE-EEEEET
T ss_pred cCCCcCceEee-eecCCC
Confidence 56888999999 599764
No 10
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]}
Probab=15.71 E-value=11 Score=18.44 Aligned_cols=13 Identities=46% Similarity=1.267 Sum_probs=10.5
Q ss_pred cCcccccCCCCCC
Q 035431 31 CVRCKCVPPGTAG 43 (65)
Q Consensus 31 C~~C~CVP~GT~G 43 (65)
|..|.|-|.|-.|
T Consensus 12 cntc~ct~tgvw~ 24 (32)
T d1gl0i_ 12 CNTCTCTPTGVWG 24 (32)
T ss_dssp SCEEEECTTSCEE
T ss_pred CCeeeecCCcEEE
Confidence 6778999998766
Done!