BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035432
(60 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M7X7|RL291_ARATH 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A
PE=1 SV=1
Length = 61
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 53/61 (86%), Gaps = 2/61 (3%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG--GSAE 58
MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN G SAE
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60
Query: 59 E 59
E
Sbjct: 61 E 61
>sp|Q84WM0|RL292_ARATH 60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B
PE=2 SV=2
Length = 61
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 53/60 (88%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 60
MAKSKNHTAHNQS KAHKNGIKKP++HRHT T+GMDPKFLRNQRYARKHN +G +A E
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60
>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2
SV=3
Length = 157
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNK 51
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A+KHNK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51
>sp|Q24154|RL29_DROME 60S ribosomal protein L29 OS=Drosophila melanogaster GN=RpL29
PE=1 SV=1
Length = 76
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 42/52 (80%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKS 52
MAKSKNHT HNQ+ KAH+NGIK+P + RH ST GMD KFL NQRYARK N S
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNLS 52
>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2
Length = 159
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>sp|Q58DW3|RL29_BOVIN 60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3
Length = 152
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>sp|P25886|RL29_RAT 60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3
Length = 156
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>sp|Q95281|RL29_PIG 60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4
Length = 160
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>sp|P47915|RL29_MOUSE 60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2
Length = 160
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQS K H+NGIKKP+ R+ S KG+DPKFLRN R+A
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFA 46
>sp|P0DJ21|RL29_TETTH 60S ribosomal protein L29 OS=Tetrahymena thermophila GN=RPL29
PE=1 SV=1
Length = 66
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKS 52
MAKSKN T NQ K+H+NGIKKPK HRH STKG++P+FLRN+R A K++ S
Sbjct: 1 MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPS 52
>sp|P05747|RL29_YEAST 60S ribosomal protein L29 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL29 PE=1 SV=3
Length = 59
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 40/46 (86%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHTAHNQ+ KAH+NGIKKPK +++ S KG+DPKF RN ++A
Sbjct: 1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46
>sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl29 PE=3 SV=3
Length = 61
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 38/46 (82%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYA 46
MAKSKNHT HNQ+ KAH+NGIK+P+KHR+ S K D KF RNQ++A
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFA 46
>sp|Q54TW3|RL29_DICDI 60S ribosomal protein L29 OS=Dictyostelium discoideum GN=rpl29
PE=3 SV=1
Length = 93
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYAR 47
MAKSKNH+ H+++ K H+NGIKK H+ TS+KG++ F RNQRYAR
Sbjct: 1 MAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYAR 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.119 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,625,185
Number of Sequences: 539616
Number of extensions: 688325
Number of successful extensions: 1283
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 19
length of query: 60
length of database: 191,569,459
effective HSP length: 33
effective length of query: 27
effective length of database: 173,762,131
effective search space: 4691577537
effective search space used: 4691577537
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)