Query 035432
Match_columns 60
No_of_seqs 111 out of 198
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_T RPL29, 60S ribosomal pr 100.0 1.4E-43 4.6E-48 215.2 5.2 57 1-57 1-57 (66)
2 3iz5_d 60S ribosomal protein L 100.0 2.1E-44 7.3E-49 215.6 -1.5 59 1-59 1-59 (60)
3 3izc_d 60S ribosomal protein R 100.0 2.4E-43 8.3E-48 210.4 -0.6 54 1-54 1-54 (59)
4 2zc2_A DNAD-like replication p 16.5 44 0.0015 18.3 0.7 11 14-24 63-73 (78)
5 1a7j_A Phosphoribulokinase; tr 16.1 65 0.0022 21.6 1.6 15 29-43 235-249 (290)
6 2l95_A Crammer, LP06209P; cyst 10.6 1.3E+02 0.0045 16.5 1.6 16 37-52 31-46 (80)
7 2rm4_A CG6311-PB, DM EDC3; enh 9.8 45 0.0016 21.1 -0.7 14 14-27 41-56 (103)
8 3pev_B Nucleoporin GLE1; RECA, 9.1 1.1E+02 0.0039 21.5 1.1 15 15-37 283-297 (297)
9 4g2a_A Hypothetical protein; t 8.4 1.1E+02 0.0037 22.4 0.8 15 36-50 265-279 (322)
10 2yle_B Formin-2, FMN2 protein; 8.0 42 0.0014 17.0 -1.1 8 15-22 15-22 (29)
No 1
>4a18_T RPL29, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_T 4a1b_T 4a1d_T
Probab=100.00 E-value=1.4e-43 Score=215.17 Aligned_cols=57 Identities=61% Similarity=0.837 Sum_probs=53.6
Q ss_pred CCCCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCc
Q 035432 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSA 57 (60)
Q Consensus 1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN~rfAkK~nkk~~~~~ 57 (60)
||||||||+||||+||||||||||+++||+||+||||+||||||||++|++++..+.
T Consensus 1 MAKSKNHT~HNQs~K~HRNGIKKp~~~ry~SlKGvdpKFlRN~~fAkK~nkk~~~~~ 57 (66)
T 4a18_T 1 MAKSKNSTNKNQISKSHRNGIKKPKDHRHISTKGVNPRFLRNRRRAIKNDPSIKKSK 57 (66)
T ss_dssp -CCCCCCCCHHHHHHHHTTCCCCCCCCSSCCCTTCCHHHHHHHHHHHHHCTTSCCCH
T ss_pred CCCCccccchhHHHHHHhCCCCCCcccccchhcCCCHHHHHhHHHHHHccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999985543
No 2
>3iz5_d 60S ribosomal protein L29 (L29E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_d
Probab=100.00 E-value=2.1e-44 Score=215.58 Aligned_cols=59 Identities=85% Similarity=1.234 Sum_probs=18.0
Q ss_pred CCCCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCCccc
Q 035432 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNGGSAEE 59 (60)
Q Consensus 1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN~rfAkK~nkk~~~~~~~ 59 (60)
||||||||+||||+||||||||||+++||+||+||||+||||||||+||++++.....+
T Consensus 1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~SlKgvdpKFLRN~~fakK~nkk~~~~~~~ 59 (60)
T 3iz5_d 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59 (60)
T ss_dssp -------------------------------------CHHHHHHHHHHSCHHHHHHTTC
T ss_pred CCCCccccchhHHHHHHhcCcCCCccccchhhcCCCHHHHHhHHHHHHhchhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999987444433
No 3
>3izc_d 60S ribosomal protein RPL29 (L29E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_d 3u5e_b 3u5i_b 4b6a_b
Probab=100.00 E-value=2.4e-43 Score=210.37 Aligned_cols=54 Identities=59% Similarity=0.767 Sum_probs=15.8
Q ss_pred CCCCccccchhhhHHhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCC
Q 035432 1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRHTSTKGMDPKFLRNQRYARKHNKSNG 54 (60)
Q Consensus 1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~slKGvdpKFLRN~rfAkK~nkk~~ 54 (60)
||||||||+||||+||||||||||+++||+||+||||+||||||||++|++++.
T Consensus 1 MaKsKNHT~HNQs~K~HRNGIKKp~~~ry~SlKgvdpKFlRN~~fakk~nkk~l 54 (59)
T 3izc_d 1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHALHGTAKAL 54 (59)
T ss_dssp -------------------------------------CHHHHHHHHHSSCHHHH
T ss_pred CCCCccccchhHHHHHHhCCcCCCcccccccccCcCHHHHHhHHHHHHcCHHHH
Confidence 999999999999999999999999999999999999999999999999998873
No 4
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=16.54 E-value=44 Score=18.26 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=8.4
Q ss_pred HHhhhcCCCCC
Q 035432 14 YKAHKNGIKKP 24 (60)
Q Consensus 14 ~K~HRNGIKKp 24 (60)
.-|+++||+-+
T Consensus 63 ~~W~~~gi~T~ 73 (78)
T 2zc2_A 63 RNWRHEGISTL 73 (78)
T ss_dssp HHHHHTTCCSH
T ss_pred HHHHHcCCCCH
Confidence 46999999853
No 5
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=16.06 E-value=65 Score=21.57 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=12.3
Q ss_pred CCCCCCCCHHHHHHH
Q 035432 29 HTSTKGMDPKFLRNQ 43 (60)
Q Consensus 29 y~slKGvdpKFLRN~ 43 (60)
+...+|+|+.||-+|
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (290)
T 1a7j_A 235 FRNPRGIDFPYLTSM 249 (290)
T ss_dssp ESSCSSCCHHHHHHH
T ss_pred EcCCCCCCHHHHHHh
Confidence 456789999999886
No 6
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=10.57 E-value=1.3e+02 Score=16.51 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhcCC
Q 035432 37 PKFLRNQRYARKHNKS 52 (60)
Q Consensus 37 pKFLRN~rfAkK~nkk 52 (60)
--|..|+++...||.+
T Consensus 31 ~iF~~N~~~I~~hN~~ 46 (80)
T 2l95_A 31 RIYAESKARIEEHNRK 46 (80)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4699999999999975
No 7
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=9.79 E-value=45 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=10.5
Q ss_pred HHhhhcCC--CCCCCC
Q 035432 14 YKAHKNGI--KKPKKH 27 (60)
Q Consensus 14 ~K~HRNGI--KKp~~~ 27 (60)
.|+.|||| |++-..
T Consensus 41 ~kaFrNGiplk~~~~E 56 (103)
T 2rm4_A 41 VRAFRNGVPLRKQNAE 56 (103)
T ss_dssp EEEEETTEECSCSSSC
T ss_pred hhhhhcCcCcCCCCce
Confidence 57889999 776554
No 8
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=9.12 E-value=1.1e+02 Score=21.48 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=10.7
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCH
Q 035432 15 KAHKNGIKKPKKHRHTSTKGMDP 37 (60)
Q Consensus 15 K~HRNGIKKp~~~ry~slKGvdp 37 (60)
.|.++||+ |++.|+|
T Consensus 283 ~~~~~~~~--------~~~~~~~ 297 (297)
T 3pev_B 283 AWQNNNME--------SFPEMSP 297 (297)
T ss_dssp HHHTTCCC--------CCCCCBC
T ss_pred HHHHhCcc--------cccCCCC
Confidence 57777776 6777776
No 9
>4g2a_A Hypothetical protein; two domains protein, yarhg domain (PFAM13308), DUF4424 (PF14 structural genomics; HET: MSE; 2.33A {Legionella pneumophila subsp}
Probab=8.44 E-value=1.1e+02 Score=22.36 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHhhc
Q 035432 36 DPKFLRNQRYARKHN 50 (60)
Q Consensus 36 dpKFLRN~rfAkK~n 50 (60)
|-.+|||.-||+.|-
T Consensus 265 ~L~i~RN~~yAr~G~ 279 (322)
T 4g2a_A 265 ELRFLRNTIYAQYGR 279 (322)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHhhhHHHHcCC
Confidence 347999999998874
No 10
>2yle_B Formin-2, FMN2 protein; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 3r7g_B
Probab=8.00 E-value=42 Score=17.01 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=6.0
Q ss_pred HhhhcCCC
Q 035432 15 KAHKNGIK 22 (60)
Q Consensus 15 K~HRNGIK 22 (60)
-.|-||||
T Consensus 15 pkH~sGiK 22 (29)
T 2yle_B 15 PRHDSGIK 22 (29)
T ss_dssp ECCTTSHH
T ss_pred cccccchh
Confidence 46888887
Done!