Query 035432
Match_columns 60
No_of_seqs 111 out of 198
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 04:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035432.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035432hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lrza3 d.108.1.4 (A:166-244,A 23.2 8.7 0.00063 21.9 0.1 19 32-50 7-25 (182)
2 d2vrda1 g.37.1.4 (A:1-61) Spli 21.2 12 0.00089 20.0 0.5 14 9-22 14-29 (61)
3 d1lkoa1 a.25.1.1 (A:2-147) Rub 15.1 39 0.0028 18.6 1.8 16 30-47 1-16 (146)
4 d1uoua2 c.27.1.1 (A:101-373) T 13.3 44 0.0032 21.0 1.8 15 32-46 249-263 (273)
5 d1ilea3 c.26.1.1 (A:1-197,A:38 11.8 34 0.0024 21.6 0.8 8 1-8 403-410 (452)
6 d1h1oa2 a.3.1.4 (A:94-183) Cyt 9.7 86 0.0063 16.6 2.1 19 28-46 39-57 (90)
7 d1seta1 a.2.7.1 (A:1-110) Sery 8.8 64 0.0047 17.3 1.3 8 35-42 2-9 (110)
8 d1uptb_ a.193.1.1 (B:) Golgi a 8.6 68 0.005 17.0 1.3 8 38-45 6-13 (58)
9 d1jfxa_ c.1.8.8 (A:) Streptomy 8.5 54 0.0039 19.3 0.9 20 31-50 37-56 (217)
10 d1ivsa4 c.26.1.1 (A:1-189,A:34 8.4 49 0.0036 20.7 0.7 8 1-8 376-383 (425)
No 1
>d1lrza3 d.108.1.4 (A:166-244,A:310-412) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}
Probab=23.15 E-value=8.7 Score=21.93 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHhhc
Q 035432 32 TKGMDPKFLRNQRYARKHN 50 (60)
Q Consensus 32 lKGvdpKFLRN~rfAkK~n 50 (60)
+++++++..||+|-|.+..
T Consensus 7 ~~~~~~~~Rr~Irka~k~g 25 (182)
T d1lrza3 7 IKNMDGLRKRNTKKVKKNG 25 (182)
T ss_dssp HHTSCHHHHHHHHHHHTSS
T ss_pred HHhcCHHHHHHHHHHHHCC
Confidence 5678888888888888754
No 2
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=12 Score=20.01 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=9.9
Q ss_pred chh-hh-HHhhhcCCC
Q 035432 9 AHN-QS-YKAHKNGIK 22 (60)
Q Consensus 9 ~HN-Qs-~K~HRNGIK 22 (60)
+|+ .+ ||.|.+|++
T Consensus 14 t~ds~s~RK~H~~G~k 29 (61)
T d2vrda1 14 THDSPSVRKTHCSGRK 29 (61)
T ss_dssp SCCSHHHHHHHTCCTH
T ss_pred ccCChhHHHHHhccHH
Confidence 444 44 799999975
No 3
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=15.14 E-value=39 Score=18.55 Aligned_cols=16 Identities=31% Similarity=0.181 Sum_probs=12.6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 035432 30 TSTKGMDPKFLRNQRYAR 47 (60)
Q Consensus 30 ~slKGvdpKFLRN~rfAk 47 (60)
.|||| ++.+.|+.-|-
T Consensus 1 ~~~k~--t~t~~~L~~a~ 16 (146)
T d1lkoa1 1 KSLKG--SRTEKNILTAF 16 (146)
T ss_dssp CCCTT--CHHHHHHHHHH
T ss_pred CCCCc--hHHHHHHHHHH
Confidence 38899 89999987654
No 4
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.35 E-value=44 Score=20.97 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.5
Q ss_pred CCCCCHHHHHHHHHH
Q 035432 32 TKGMDPKFLRNQRYA 46 (60)
Q Consensus 32 lKGvdpKFLRN~rfA 46 (60)
-.|.||-|++..|+-
T Consensus 249 Aqgg~~~~~~~~~~~ 263 (273)
T d1uoua2 249 AQGVDPGLARALCSG 263 (273)
T ss_dssp HTTCCHHHHHHHHHS
T ss_pred HHCCCHHHHHhhccc
Confidence 468899999999873
No 5
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=11.76 E-value=34 Score=21.63 Aligned_cols=8 Identities=50% Similarity=0.650 Sum_probs=6.1
Q ss_pred CCCCcccc
Q 035432 1 MAKSKNHT 8 (60)
Q Consensus 1 MaKsKNHT 8 (60)
||||+++.
T Consensus 403 MSKS~gn~ 410 (452)
T d1ilea3 403 MSKSKGNV 410 (452)
T ss_dssp CCTTTTCC
T ss_pred cCCCCCCC
Confidence 88888765
No 6
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=9.69 E-value=86 Score=16.56 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=15.7
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q 035432 28 RHTSTKGMDPKFLRNQRYA 46 (60)
Q Consensus 28 ry~slKGvdpKFLRN~rfA 46 (60)
.+++|-|.++.||..+-.+
T Consensus 39 ~~P~LaGq~~~Yl~~qL~~ 57 (90)
T d1h1oa2 39 PFPRLAGQRYGYIIQQLTY 57 (90)
T ss_dssp TBCCCTTCCHHHHHHHHHH
T ss_pred CCCccCCCCHHHHHHHHHH
Confidence 4799999999999886544
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=8.77 E-value=64 Score=17.33 Aligned_cols=8 Identities=50% Similarity=0.559 Sum_probs=6.4
Q ss_pred CCHHHHHH
Q 035432 35 MDPKFLRN 42 (60)
Q Consensus 35 vdpKFLRN 42 (60)
+|++|||+
T Consensus 2 lDik~ir~ 9 (110)
T d1seta1 2 VDLKRLRQ 9 (110)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHh
Confidence 58888886
No 8
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.61 E-value=68 Score=17.03 Aligned_cols=8 Identities=25% Similarity=0.717 Sum_probs=6.7
Q ss_pred HHHHHHHH
Q 035432 38 KFLRNQRY 45 (60)
Q Consensus 38 KFLRN~rf 45 (60)
.||||+-|
T Consensus 6 EYLRnvLf 13 (58)
T d1uptb_ 6 EYLRKVLF 13 (58)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68999877
No 9
>d1jfxa_ c.1.8.8 (A:) Streptomyces lysozyme {Streptomyces coelicolor, "mueller" dsm3030 [TaxId: 1902]}
Probab=8.50 E-value=54 Score=19.29 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHhhc
Q 035432 31 STKGMDPKFLRNQRYARKHN 50 (60)
Q Consensus 31 slKGvdpKFLRN~rfAkK~n 50 (60)
..--+||+|..|..-|++-.
T Consensus 37 G~~~~D~~~~~n~~~A~~aG 56 (217)
T d1jfxa_ 37 GTNYKDDRFSANYTNAYNAG 56 (217)
T ss_dssp TTTEECTTHHHHHHHHHHTT
T ss_pred CCCccChHHHHHHHHHHHcC
Confidence 34458999999999998653
No 10
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
Probab=8.44 E-value=49 Score=20.66 Aligned_cols=8 Identities=50% Similarity=0.650 Sum_probs=5.5
Q ss_pred CCCCcccc
Q 035432 1 MAKSKNHT 8 (60)
Q Consensus 1 MaKsKNHT 8 (60)
||||+.|.
T Consensus 376 MSKS~Gn~ 383 (425)
T d1ivsa4 376 MSKSKGNV 383 (425)
T ss_dssp CBTTTTBC
T ss_pred cCCCCCCC
Confidence 77777664
Done!