BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035433
         (49 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LD45|BI1_ARATH Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1
          Length = 247

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 31/39 (79%), Gaps = 2/39 (5%)

Query: 1  MDAFSSYFESRNGEARW--ESLKNFHQISPVVQSHLKQL 37
          MDAFSS+F+S+ G   W  +SLKNF QISP VQ+HLK++
Sbjct: 1  MDAFSSFFDSQPGSRSWSYDSLKNFRQISPAVQNHLKRV 39


>sp|Q9MBD8|BI1_ORYSJ Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1
          Length = 249

 Score = 40.0 bits (92), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 1  MDAFSSYFESRNGEAR---WESLKNFHQISPVVQSHLK 35
          MDAF S   +    A    ++SLKNF QISP VQSHLK
Sbjct: 1  MDAFYSTSSAYGAAASGWGYDSLKNFRQISPAVQSHLK 38


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,632,497
Number of Sequences: 539616
Number of extensions: 490392
Number of successful extensions: 1587
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 191,569,459
effective HSP length: 22
effective length of query: 27
effective length of database: 179,697,907
effective search space: 4851843489
effective search space used: 4851843489
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)