Query 035433
Match_columns 49
No_of_seqs 72 out of 74
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 02:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1629 Bax-mediated apoptosis 98.9 1.1E-09 2.5E-14 76.1 2.3 27 15-41 8-34 (235)
2 PF07577 DUF1547: Domain of Un 87.6 0.24 5.2E-06 28.4 0.6 16 26-41 2-17 (58)
3 PRK10447 HflBKC-binding inner 85.9 0.42 9.1E-06 32.5 1.2 12 29-40 16-27 (219)
4 COG4012 Uncharacterized protei 54.2 5 0.00011 29.7 0.4 23 23-45 60-85 (342)
5 PF01027 Bax1-I: Inhibitor of 38.4 13 0.00028 23.1 0.4 11 31-41 1-11 (205)
6 cd06181 BI-1-like BAX inhibito 37.5 19 0.00041 23.0 1.1 11 30-40 2-12 (212)
7 PF14165 YtzH: YtzH-like prote 36.8 44 0.00096 20.4 2.6 23 18-40 36-58 (87)
8 PF13716 CRAL_TRIO_2: Divergen 26.9 22 0.00048 21.0 0.1 26 15-40 65-91 (149)
9 PF08735 DUF1786: Putative pyr 26.3 20 0.00042 25.4 -0.3 20 26-45 6-28 (254)
10 PF13907 DUF4208: Domain of un 26.0 44 0.00095 19.8 1.2 14 27-40 22-35 (100)
11 PF12321 DUF3634: Protein of u 23.4 54 0.0012 20.6 1.4 20 24-43 78-97 (108)
12 TIGR02266 gmx_TIGR02266 Myxoco 23.2 65 0.0014 17.6 1.6 17 21-37 78-94 (96)
13 COG2771 CsgD DNA-binding HTH d 22.3 72 0.0016 15.8 1.5 16 24-39 29-45 (65)
14 PRK04841 transcriptional regul 22.2 51 0.0011 24.7 1.2 14 26-39 865-879 (903)
15 PF01454 MAGE: MAGE family; I 20.9 70 0.0015 20.2 1.5 16 28-43 37-52 (195)
No 1
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=98.86 E-value=1.1e-09 Score=76.06 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=24.7
Q ss_pred cchHHhhccCCCCHHHHHHHHhhhhcc
Q 035433 15 ARWESLKNFHQISPVVQSHLKQLLPLE 41 (49)
Q Consensus 15 ~~~~al~nf~~Isp~VQqHLKnVY~~~ 41 (49)
.+|++|+||++|||.||+||||||++=
T Consensus 8 ~~fd~l~n~~~~sP~vq~HLkkvY~tl 34 (235)
T KOG1629|consen 8 WSFDALLNFSHISPAVQNHLKKVYLTL 34 (235)
T ss_pred hhHHHHhccccCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999863
No 2
>PF07577 DUF1547: Domain of Unknown Function (DUF1547); InterPro: IPR011443 This domain appears to be found only in a small family of Chlamydia species. It is usually found repeated. The function of these proteins is not known.
Probab=87.58 E-value=0.24 Score=28.37 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.6
Q ss_pred CCHHHHHHHHhhhhcc
Q 035433 26 ISPVVQSHLKQLLPLE 41 (49)
Q Consensus 26 Isp~VQqHLKnVY~~~ 41 (49)
|=|.||+||..||..+
T Consensus 2 iL~~vR~HLD~vy~~~ 17 (58)
T PF07577_consen 2 ILPAVRAHLDVVYDQD 17 (58)
T ss_pred HHHHHHHHhhceecCC
Confidence 4478999999999865
No 3
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=85.91 E-value=0.42 Score=32.47 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhc
Q 035433 29 VVQSHLKQLLPL 40 (49)
Q Consensus 29 ~VQqHLKnVY~~ 40 (49)
.+++||||||++
T Consensus 16 ~~~~~Lr~vY~l 27 (219)
T PRK10447 16 STHKVLRNTYFL 27 (219)
T ss_pred HHhHHHHHHHHH
Confidence 589999999987
No 4
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.16 E-value=5 Score=29.72 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.5
Q ss_pred cCCCCHHHHHHHHh---hhhcccccc
Q 035433 23 FHQISPVVQSHLKQ---LLPLERYSL 45 (49)
Q Consensus 23 f~~Isp~VQqHLKn---VY~~~~~~~ 45 (49)
.-.++-.|+.|||+ ||++|+..|
T Consensus 60 GGp~travrrhlk~G~rVyatedAAl 85 (342)
T COG4012 60 GGPTTRAVRRHLKKGTRVYATEDAAL 85 (342)
T ss_pred CChhhHHHHHHHhcCCeeEechhhhh
Confidence 35678899999998 999998765
No 5
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=38.35 E-value=13 Score=23.13 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.9
Q ss_pred HHHHHhhhhcc
Q 035433 31 QSHLKQLLPLE 41 (49)
Q Consensus 31 QqHLKnVY~~~ 41 (49)
|+||+|||..=
T Consensus 1 ~~fl~kvy~~l 11 (205)
T PF01027_consen 1 RQFLRKVYGLL 11 (205)
T ss_pred ChHHHHHHHHH
Confidence 68999999753
No 6
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=37.46 E-value=19 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=9.5
Q ss_pred HHHHHHhhhhc
Q 035433 30 VQSHLKQLLPL 40 (49)
Q Consensus 30 VQqHLKnVY~~ 40 (49)
.|+|++|||+.
T Consensus 2 ~~~fl~kVY~~ 12 (212)
T cd06181 2 RRGFLRKVYGL 12 (212)
T ss_pred HHHHHHHHHHH
Confidence 58899999975
No 7
>PF14165 YtzH: YtzH-like protein
Probab=36.80 E-value=44 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.2
Q ss_pred HHhhccCCCCHHHHHHHHhhhhc
Q 035433 18 ESLKNFHQISPVVQSHLKQLLPL 40 (49)
Q Consensus 18 ~al~nf~~Isp~VQqHLKnVY~~ 40 (49)
.+|+....|++.+++=|..||.-
T Consensus 36 ksLm~n~~i~~~ik~~L~~Iy~y 58 (87)
T PF14165_consen 36 KSLMANPNIDADIKQTLEEIYSY 58 (87)
T ss_pred HHHHcCCCcCHHHHHHHHHHHHH
Confidence 56788899999999999999963
No 8
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=26.89 E-value=22 Score=20.99 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=19.9
Q ss_pred cchHHhhcc-CCCCHHHHHHHHhhhhc
Q 035433 15 ARWESLKNF-HQISPVVQSHLKQLLPL 40 (49)
Q Consensus 15 ~~~~al~nf-~~Isp~VQqHLKnVY~~ 40 (49)
.+|+.+.++ ..++...++.|++||-+
T Consensus 65 ~~~~~l~~~~~~l~~~~~~nl~~vyiv 91 (149)
T PF13716_consen 65 PSLSWLKQLYKLLPRKYKKNLKKVYIV 91 (149)
T ss_dssp --HHHHHHTTTSS-HHHHHTEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHhhceEEEEEE
Confidence 468888888 88888999999999964
No 9
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=26.25 E-value=20 Score=25.37 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=15.9
Q ss_pred CCHHHHHHHHh---hhhcccccc
Q 035433 26 ISPVVQSHLKQ---LLPLERYSL 45 (49)
Q Consensus 26 Isp~VQqHLKn---VY~~~~~~~ 45 (49)
.+..+++|||+ ||+++...+
T Consensus 6 ~~~Av~~Hl~aG~~V~at~~AA~ 28 (254)
T PF08735_consen 6 FTRAVKEHLKAGLRVYATPDAAL 28 (254)
T ss_pred HHHHHHHHHHCCCcEEEcHHHHh
Confidence 45689999997 999887654
No 10
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=25.99 E-value=44 Score=19.76 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=11.0
Q ss_pred CHHHHHHHHhhhhc
Q 035433 27 SPVVQSHLKQLLPL 40 (49)
Q Consensus 27 sp~VQqHLKnVY~~ 40 (49)
=.||+.|||++=..
T Consensus 22 m~Pvkk~LkkL~~~ 35 (100)
T PF13907_consen 22 MRPVKKSLKKLKKP 35 (100)
T ss_pred hHHHHHHHHHhccC
Confidence 36899999998554
No 11
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=23.35 E-value=54 Score=20.58 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHhhhhcccc
Q 035433 24 HQISPVVQSHLKQLLPLERY 43 (49)
Q Consensus 24 ~~Isp~VQqHLKnVY~~~~~ 43 (49)
.+|.+.|||-+.||+.-+-|
T Consensus 78 ~~ip~~v~QriRNvfP~~~~ 97 (108)
T PF12321_consen 78 RSIPKKVQQRIRNVFPHQGF 97 (108)
T ss_pred CCCCHHHhhhhhhcCCCcCc
Confidence 79999999999999987765
No 12
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=23.19 E-value=65 Score=17.57 Aligned_cols=17 Identities=12% Similarity=0.386 Sum_probs=14.5
Q ss_pred hccCCCCHHHHHHHHhh
Q 035433 21 KNFHQISPVVQSHLKQL 37 (49)
Q Consensus 21 ~nf~~Isp~VQqHLKnV 37 (49)
.+|..+++..|+||++.
T Consensus 78 v~F~~~~~~~~~~i~~~ 94 (96)
T TIGR02266 78 VRFEDLDAESRARLQRV 94 (96)
T ss_pred EEeccCCHHHHHHHHHH
Confidence 56789999999999874
No 13
>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription]
Probab=22.25 E-value=72 Score=15.85 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=11.4
Q ss_pred CCCCH-HHHHHHHhhhh
Q 035433 24 HQISP-VVQSHLKQLLP 39 (49)
Q Consensus 24 ~~Isp-~VQqHLKnVY~ 39 (49)
-.|++ -|..|++++|.
T Consensus 29 l~is~~tV~~h~~~i~~ 45 (65)
T COG2771 29 LGISEETVKTHLRNIYR 45 (65)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 35554 57899999874
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.21 E-value=51 Score=24.70 Aligned_cols=14 Identities=14% Similarity=0.634 Sum_probs=10.3
Q ss_pred CCH-HHHHHHHhhhh
Q 035433 26 ISP-VVQSHLKQLLP 39 (49)
Q Consensus 26 Isp-~VQqHLKnVY~ 39 (49)
||+ -|+.||+|+|.
T Consensus 865 ~s~~tv~~h~~~~~~ 879 (903)
T PRK04841 865 VAATTIKTHIRNLYQ 879 (903)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444 47899999985
No 15
>PF01454 MAGE: MAGE family; InterPro: IPR002190 The first mammalian members of the MAGE (melanoma-associated antigen) gene family were originally described as completely silent in normal adult tissues, with the exception of male germ cells and, for some of them, placenta. By contrast, these genes were expressed in various kinds of tumors. However, other members of the family were recently found to be expressed in normal cells, indicating that the family is larger and more disparate than initially expected. MAGE-like genes have also been identified in non-mammalian species, including Drosophila melanogaster (Fruit fly) and Danio rerio (Zebrafish). Although no MAGE homologous sequences have been identified in Caenorhabditis elegans, Saccharomyces cerevisiae (Baker's yeast) or Schizosaccharomyces pombe (Fission yeast), MAGE sequences have been found in several vegetal species, including Arabidopsis thaliana (Mouse-ear cress) []. The only region of homology shared by all of the members of the family is a stretch of about 200 amino acids which has been named the MAGE conserved domain. The MAGE conserved domain is usually located close to the C-terminal, although it can also be found in a more central position in some proteins. The MAGE conserved domain is generally present as a single copy but it is duplicated in some proteins. It has been proposed that the MAGE conserved domain of MAGE-D proteins might interact with p75 neurotrophin or related receptors [].; PDB: 3NW0_B 2WA0_A 1I4F_C.
Probab=20.93 E-value=70 Score=20.18 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.4
Q ss_pred HHHHHHHHhhhhcccc
Q 035433 28 PVVQSHLKQLLPLERY 43 (49)
Q Consensus 28 p~VQqHLKnVY~~~~~ 43 (49)
+.++..|+.||+.|.-
T Consensus 37 ~~a~~~L~~vFG~eL~ 52 (195)
T PF01454_consen 37 ERANEILEDVFGFELV 52 (195)
T ss_dssp HHHHHHHHHHH-EEEE
T ss_pred HHHHHHHHHHhceEEE
Confidence 4689999999998853
Done!