Query 035433
Match_columns 49
No_of_seqs 72 out of 74
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:08:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zet_C Melanophilin; complex, 54.6 6.5 0.00022 24.5 1.8 26 13-38 4-29 (153)
2 4fdd_A Transportin-1; heat rep 40.6 11 0.00037 26.7 1.3 24 15-40 829-852 (852)
3 1n6j_G Calcineurin-binding pro 33.5 26 0.0009 17.5 1.8 18 24-41 7-24 (35)
4 2p14_A Heterodimeric restricti 27.4 38 0.0013 22.1 2.2 12 28-39 88-99 (192)
5 3p87_G Ribonuclease H2 subunit 24.9 20 0.0007 16.6 0.4 10 1-10 5-14 (23)
6 2ewf_A Nicking endonuclease N. 24.3 33 0.0011 25.8 1.7 20 28-47 490-517 (610)
7 1xmk_A Double-stranded RNA-spe 20.4 48 0.0016 18.3 1.5 14 25-38 36-51 (79)
8 3idw_A Actin cytoskeleton-regu 19.6 49 0.0017 18.7 1.4 13 29-41 56-68 (72)
9 2ptm_A Hyperpolarization-activ 16.5 94 0.0032 17.6 2.2 21 18-38 18-38 (198)
10 1zfo_A LAsp-1; LIM domain, zin 16.4 25 0.00085 16.1 -0.3 10 35-44 11-20 (31)
No 1
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=54.60 E-value=6.5 Score=24.45 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=17.9
Q ss_pred cccchHHhhccCCCCHHHHHHHHhhh
Q 035433 13 GEARWESLKNFHQISPVVQSHLKQLL 38 (49)
Q Consensus 13 ~~~~~~al~nf~~Isp~VQqHLKnVY 38 (49)
+.+.+....+.++|++.-|+|+-+|-
T Consensus 4 ~~~~m~~~~dLs~LteeEr~~Il~VL 29 (153)
T 2zet_C 4 GSSGMGKRLDLSTLTDEEAEHVWAVV 29 (153)
T ss_dssp -------CCCCTTSCHHHHHHHHHHH
T ss_pred CCCCCccCCCcccCCHHHHHHHHHHH
Confidence 34567788999999999999999985
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=40.63 E-value=11 Score=26.74 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.1
Q ss_pred cchHHhhccCCCCHHHHHHHHhhhhc
Q 035433 15 ARWESLKNFHQISPVVQSHLKQLLPL 40 (49)
Q Consensus 15 ~~~~al~nf~~Isp~VQqHLKnVY~~ 40 (49)
.+|++++ ++++|++|+-|+.+|.+
T Consensus 829 ~~~~~~~--~~~~~~~~~~l~~~~~~ 852 (852)
T 4fdd_A 829 ENWRRFS--DQFPLPLKERLAAFYGV 852 (852)
T ss_dssp HHHHHHG--GGCCHHHHHHHHHTSCC
T ss_pred hhHHHHH--HhCCHHHHHHHHHHhCc
Confidence 3477664 56999999999999963
No 3
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=33.50 E-value=26 Score=17.55 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHhhhhcc
Q 035433 24 HQISPVVQSHLKQLLPLE 41 (49)
Q Consensus 24 ~~Isp~VQqHLKnVY~~~ 41 (49)
.-|+..++|-||++-.+.
T Consensus 7 gsiseetkqklk~~ils~ 24 (35)
T 1n6j_G 7 GSISEETKQKLKSAILSA 24 (35)
T ss_dssp SCCCHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHhh
Confidence 468999999999987653
No 4
>2p14_A Heterodimeric restriction endonuclease R.BSPD6I S subunit; hydrolase; 1.50A {Bacillus SP}
Probab=27.44 E-value=38 Score=22.10 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhh
Q 035433 28 PVVQSHLKQLLP 39 (49)
Q Consensus 28 p~VQqHLKnVY~ 39 (49)
+||..||++.-.
T Consensus 88 ePV~RHl~~~~~ 99 (192)
T 2p14_A 88 DSVVRHLQEYKK 99 (192)
T ss_dssp HHHHHHHHHHHT
T ss_pred CcHHHHHHHHHh
Confidence 689999986544
No 5
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=24.93 E-value=20 Score=16.57 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=7.7
Q ss_pred Chhhhhhhhc
Q 035433 1 MDAFSSYFES 10 (49)
Q Consensus 1 md~m~sff~~ 10 (49)
|-++++||+.
T Consensus 5 MKSI~sFF~~ 14 (23)
T 3p87_G 5 MKSIDTFFGV 14 (26)
T ss_pred chhHHHHhcc
Confidence 5678888876
No 6
>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP}
Probab=24.26 E-value=33 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=14.8
Q ss_pred HHHHHHHHhh--------hhccccccee
Q 035433 28 PVVQSHLKQL--------LPLERYSLFC 47 (49)
Q Consensus 28 p~VQqHLKnV--------Y~~~~~~~~~ 47 (49)
+||..||++. +.=+.|+||+
T Consensus 490 ePV~RHl~~~~~~~~~~~~~k~~y~lFI 517 (610)
T 2ewf_A 490 EPVTRHYLNKKKELEKQGVEKELYCLFI 517 (610)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CcHHHHHHHHHhhhhhccCCCceeEEEe
Confidence 6899999987 4444577775
No 7
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.45 E-value=48 Score=18.33 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=9.9
Q ss_pred CCCH--HHHHHHHhhh
Q 035433 25 QISP--VVQSHLKQLL 38 (49)
Q Consensus 25 ~Isp--~VQqHLKnVY 38 (49)
.|++ .|++||...-
T Consensus 36 git~~~aVr~hL~~Le 51 (79)
T 1xmk_A 36 GLTKARDINAVLIDME 51 (79)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 4554 7999998753
No 8
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=19.65 E-value=49 Score=18.74 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhcc
Q 035433 29 VVQSHLKQLLPLE 41 (49)
Q Consensus 29 ~VQqHLKnVY~~~ 41 (49)
.|.+||++.|.-+
T Consensus 56 rVmk~l~~k~~r~ 68 (72)
T 3idw_A 56 RVMKHLDKKFGRE 68 (72)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCcC
Confidence 3688999998744
No 9
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=16.55 E-value=94 Score=17.65 Aligned_cols=21 Identities=5% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHhhccCCCCHHHHHHHHhhh
Q 035433 18 ESLKNFHQISPVVQSHLKQLL 38 (49)
Q Consensus 18 ~al~nf~~Isp~VQqHLKnVY 38 (49)
+..++.++|++..|+.+++-|
T Consensus 18 ~~~m~~~~i~~~l~~rv~~y~ 38 (198)
T 2ptm_A 18 EEYMQYRKLPSHLRNKILDYY 38 (198)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHH
Confidence 667777999999999988844
No 10
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=16.36 E-value=25 Score=16.07 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=7.4
Q ss_pred Hhhhhccccc
Q 035433 35 KQLLPLERYS 44 (49)
Q Consensus 35 KnVY~~~~~~ 44 (49)
|.||..|+..
T Consensus 11 k~Vy~~Ek~~ 20 (31)
T 1zfo_A 11 KIVYPTEKVN 20 (31)
T ss_dssp SBCCGGGCCC
T ss_pred CEEecceeEE
Confidence 6788888754
Done!