Query 035433
Match_columns 49
No_of_seqs 72 out of 74
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 04:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035433.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035433hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qbkb_ a.118.1.1 (B:) Karyoph 52.9 2.6 0.00019 27.8 1.5 24 15-40 865-888 (888)
2 d2d8ya1 g.39.1.3 (A:9-43) Epli 33.9 2.9 0.00021 19.6 -0.5 10 35-44 15-24 (35)
3 d1jl7a_ a.1.1.2 (A:) Glycera g 33.5 24 0.0018 18.4 3.3 25 15-39 39-64 (147)
4 d1le8a_ a.4.1.1 (A:) Mating ty 32.8 16 0.0011 17.3 2.2 19 25-43 3-21 (53)
5 d2co8a2 g.39.1.3 (A:8-43) Nedd 32.4 3.5 0.00026 19.5 -0.4 10 35-44 16-25 (36)
6 d3buxb2 a.48.1.1 (B:48-177) N- 24.9 16 0.0012 21.5 1.6 15 25-39 39-53 (130)
7 d1l3la1 a.4.6.2 (A:170-234) Qu 24.1 15 0.0011 17.7 1.2 15 25-39 30-45 (65)
8 d1nxza1 b.122.1.2 (A:2-73) Hyp 23.4 19 0.0014 17.6 1.5 18 25-42 18-35 (72)
9 d1fsea_ a.4.6.2 (A:) Germinati 22.3 18 0.0013 17.4 1.2 15 25-39 30-45 (67)
10 d1a04a1 a.4.6.2 (A:150-216) Ni 20.7 20 0.0015 17.3 1.2 15 25-39 32-47 (67)
No 1
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.89 E-value=2.6 Score=27.83 Aligned_cols=24 Identities=13% Similarity=0.375 Sum_probs=19.2
Q ss_pred cchHHhhccCCCCHHHHHHHHhhhhc
Q 035433 15 ARWESLKNFHQISPVVQSHLKQLLPL 40 (49)
Q Consensus 15 ~~~~al~nf~~Isp~VQqHLKnVY~~ 40 (49)
..|++++ ++++|++|+-|.++|.+
T Consensus 865 ~~w~~~~--~~~~~~~~~~l~~~y~~ 888 (888)
T d1qbkb_ 865 ENWRRFS--DQFPLPLKERLAAFYGV 888 (888)
T ss_dssp HHHHHHH--HSSCHHHHHHHHHHCC-
T ss_pred HhHHHHH--HcCCHHHHHHHHHhhCc
Confidence 4577765 57999999999999974
No 2
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.91 E-value=2.9 Score=19.63 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=8.3
Q ss_pred Hhhhhccccc
Q 035433 35 KQLLPLERYS 44 (49)
Q Consensus 35 KnVY~~~~~~ 44 (49)
|.||..||.+
T Consensus 15 K~VY~~E~~~ 24 (35)
T d2d8ya1 15 KTVYPMERLL 24 (35)
T ss_dssp CBCCTTSEEE
T ss_pred CEEeeeeeEe
Confidence 6799999875
No 3
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}
Probab=33.46 E-value=24 Score=18.41 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=17.7
Q ss_pred cchHHhhcc-CCCCHHHHHHHHhhhh
Q 035433 15 ARWESLKNF-HQISPVVQSHLKQLLP 39 (49)
Q Consensus 15 ~~~~al~nf-~~Isp~VQqHLKnVY~ 39 (49)
+....+|.. ..-+|..+.|.++|-.
T Consensus 39 P~~~~~F~~~~~~~~~~~~h~~~v~~ 64 (147)
T d1jl7a_ 39 PEMAAVFGFSGASDPGVAELGAKVLA 64 (147)
T ss_dssp GGGHHHHTCSSTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcccccCCHHHHHHHHHHHH
Confidence 445566665 5567899999988843
No 4
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.81 E-value=16 Score=17.34 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHhhhhcccc
Q 035433 25 QISPVVQSHLKQLLPLERY 43 (49)
Q Consensus 25 ~Isp~VQqHLKnVY~~~~~ 43 (49)
.++|....-|..+|....|
T Consensus 3 ~~s~~q~~~Le~~F~~~~~ 21 (53)
T d1le8a_ 3 SISPQARAFLEQVFRRKQS 21 (53)
T ss_dssp CCCHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 5778888888888876655
No 5
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.42 E-value=3.5 Score=19.55 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=8.1
Q ss_pred Hhhhhccccc
Q 035433 35 KQLLPLERYS 44 (49)
Q Consensus 35 KnVY~~~~~~ 44 (49)
|.||.+||.+
T Consensus 16 K~VY~~Erl~ 25 (36)
T d2co8a2 16 EHLYVLERLC 25 (36)
T ss_dssp CBCCTTTBCC
T ss_pred CEEeeeeEEE
Confidence 6799999865
No 6
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.87 E-value=16 Score=21.47 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHhhhh
Q 035433 25 QISPVVQSHLKQLLP 39 (49)
Q Consensus 25 ~Isp~VQqHLKnVY~ 39 (49)
.|=|.+.+||..|+.
T Consensus 39 DiLpdT~~~Lr~i~~ 53 (130)
T d3buxb2 39 DLLPDTYQHLRTILS 53 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 455899999999995
No 7
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.15 E-value=15 Score=17.66 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=11.3
Q ss_pred CCC-HHHHHHHHhhhh
Q 035433 25 QIS-PVVQSHLKQLLP 39 (49)
Q Consensus 25 ~Is-p~VQqHLKnVY~ 39 (49)
.|| .-|+.|++++|.
T Consensus 30 ~iS~~TV~~~~~~i~~ 45 (65)
T d1l3la1 30 GVKYNSVRVKLREAMK 45 (65)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 456 458999999884
No 8
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=23.44 E-value=19 Score=17.60 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhhhhccc
Q 035433 25 QISPVVQSHLKQLLPLER 42 (49)
Q Consensus 25 ~Isp~VQqHLKnVY~~~~ 42 (49)
.|++..-.||+||--...
T Consensus 18 ~L~~~~~hHl~~VLR~k~ 35 (72)
T d1nxza1 18 YLSEDAANHVARVLRMTE 35 (72)
T ss_dssp ECCHHHHHHHHTTSCCCT
T ss_pred EcCHHHHHHHHheeCCCC
Confidence 589999999999975543
No 9
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=22.25 E-value=18 Score=17.41 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=10.8
Q ss_pred CCCH-HHHHHHHhhhh
Q 035433 25 QISP-VVQSHLKQLLP 39 (49)
Q Consensus 25 ~Isp-~VQqHLKnVY~ 39 (49)
.||+ -|+.|++++|.
T Consensus 30 ~is~~TV~~~~~~i~~ 45 (67)
T d1fsea_ 30 FISEKTVRNHISNAMQ 45 (67)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3454 47999999884
No 10
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=20.69 E-value=20 Score=17.31 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=11.1
Q ss_pred CCCH-HHHHHHHhhhh
Q 035433 25 QISP-VVQSHLKQLLP 39 (49)
Q Consensus 25 ~Isp-~VQqHLKnVY~ 39 (49)
.||+ -|++|++++|.
T Consensus 32 ~iS~~TV~~~~~~i~~ 47 (67)
T d1a04a1 32 DITESTVKVHVKHMLK 47 (67)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555 47999999884
Done!