Query 035434
Match_columns 48
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 04:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xrx_A SEQA protein; protein f 51.7 7 0.00024 21.8 1.5 15 33-47 21-35 (50)
2 3p9c_A Caffeic acid O-methyltr 43.2 10 0.00035 24.4 1.4 19 29-47 64-84 (364)
3 3fmt_A Protein SEQA; protein-D 40.3 11 0.00037 24.7 1.3 16 32-47 20-35 (162)
4 1zg3_A Isoflavanone 4'-O-methy 34.0 17 0.00059 22.8 1.4 20 28-47 52-71 (358)
5 2pa8_D DNA-directed RNA polyme 30.1 17 0.0006 23.2 1.0 14 32-45 19-32 (265)
6 1fp2_A Isoflavone O-methyltran 29.3 24 0.00082 22.1 1.5 20 28-47 58-77 (352)
7 3reo_A (ISO)eugenol O-methyltr 27.2 26 0.0009 22.4 1.4 14 34-47 73-86 (368)
8 4fu0_A D-alanine--D-alanine li 26.3 26 0.0009 22.3 1.3 29 13-47 315-346 (357)
9 1fp1_D Isoliquiritigenin 2'-O- 24.5 31 0.0011 21.8 1.4 14 34-47 78-91 (372)
10 1t4b_A Aspartate-semialdehyde 24.5 22 0.00074 24.0 0.7 13 35-47 353-365 (367)
11 3h0g_C DNA-directed RNA polyme 23.7 26 0.00089 23.9 1.0 14 32-45 23-36 (297)
12 1dl0_A J-atracotoxin-HV1C; neu 23.2 17 0.00058 19.1 -0.0 10 25-34 21-30 (37)
13 1twf_C B44.5, DNA-directed RNA 22.4 29 0.00098 23.7 1.0 14 32-45 24-37 (318)
14 2r3s_A Uncharacterized protein 21.9 35 0.0012 20.6 1.2 16 29-47 47-62 (335)
No 1
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=51.70 E-value=7 Score=21.77 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=11.8
Q ss_pred cCcchhHHHHHhhhc
Q 035434 33 VDAGATDNLRRLLRL 47 (48)
Q Consensus 33 vdd~atdnLRRLLRL 47 (48)
+-.+|.|-|||||.+
T Consensus 21 igEsaSdiLRRll~l 35 (50)
T 1xrx_A 21 IGESASDILRRMLKF 35 (50)
T ss_dssp TTCCHHHHHHHHHTC
T ss_pred hccCHHHHHHHHHcC
Confidence 445678999999976
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=43.16 E-value=10 Score=24.43 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=12.9
Q ss_pred hhhcc--CcchhHHHHHhhhc
Q 035434 29 EAAGV--DAGATDNLRRLLRL 47 (48)
Q Consensus 29 Eaagv--dd~atdnLRRLLRL 47 (48)
++.|+ +..+...||||||.
T Consensus 64 ~~~g~~~~~~~~~~l~rlLr~ 84 (364)
T 3p9c_A 64 AKLPSAANPEAPDMVDRILRL 84 (364)
T ss_dssp HTTTCTTCTTHHHHHHHHHHH
T ss_pred HhcCCCCCccchhhHHHHHHH
Confidence 33465 55566789999984
No 3
>3fmt_A Protein SEQA; protein-DNA complex, hemimethylated GATC, DNA replication; HET: 6MA; 2.98A {Escherichia coli}
Probab=40.32 E-value=11 Score=24.69 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.1
Q ss_pred ccCcchhHHHHHhhhc
Q 035434 32 GVDAGATDNLRRLLRL 47 (48)
Q Consensus 32 gvdd~atdnLRRLLRL 47 (48)
.+-.+|-|=|||||.|
T Consensus 20 ~IGESASdILRRLL~l 35 (162)
T 3fmt_A 20 HIGESRSDILRRMLKF 35 (162)
T ss_dssp STTCCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHhCC
Confidence 4556789999999976
No 4
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=33.97 E-value=17 Score=22.82 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.2
Q ss_pred hhhhccCcchhHHHHHhhhc
Q 035434 28 AEAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 28 aEaagvdd~atdnLRRLLRL 47 (48)
|+..|++....+.|+|+||.
T Consensus 52 A~~~g~~~~~~~~l~rlLr~ 71 (358)
T 1zg3_A 52 ASSLKLHPSKVNILHRFLRL 71 (358)
T ss_dssp HHHTTCCTTTHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHH
Confidence 34457765567889999984
No 5
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=30.09 E-value=17 Score=23.23 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=12.9
Q ss_pred ccCcchhHHHHHhh
Q 035434 32 GVDAGATDNLRRLL 45 (48)
Q Consensus 32 gvdd~atdnLRRLL 45 (48)
|++..-+|.|||+|
T Consensus 19 g~~~t~~NalRRil 32 (265)
T 2pa8_D 19 GYPLEFVNAIRRAS 32 (265)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 88888999999987
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=29.27 E-value=24 Score=22.09 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=14.2
Q ss_pred hhhhccCcchhHHHHHhhhc
Q 035434 28 AEAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 28 aEaagvdd~atdnLRRLLRL 47 (48)
|+..|++....+.|+|+||.
T Consensus 58 a~~~~~~~~~~~~l~rlLr~ 77 (352)
T 1fp2_A 58 VSILQVPSSKIGNVRRLMRY 77 (352)
T ss_dssp HHHHTCCGGGHHHHHHHHHH
T ss_pred HHHhCcCCCChHHHHHHHHH
Confidence 34447766667889999984
No 7
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=27.22 E-value=26 Score=22.44 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=10.1
Q ss_pred CcchhHHHHHhhhc
Q 035434 34 DAGATDNLRRLLRL 47 (48)
Q Consensus 34 dd~atdnLRRLLRL 47 (48)
+..+.+.|+|+||.
T Consensus 73 ~~~~~~~l~rlLr~ 86 (368)
T 3reo_A 73 NPEAPVMLDRVLRL 86 (368)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHH
Confidence 44456789999984
No 8
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=26.31 E-value=26 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=19.4
Q ss_pred ccccc---cccccccccchhhhccCcchhHHHHHhhhc
Q 035434 13 ASGEF---ALRPKLISCNAEAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 13 PlP~F---Slk~K~~~CnaEaagvdd~atdnLRRLLRL 47 (48)
|+|.| |+-||. ++++|++= .+=+.||+.|
T Consensus 315 t~PG~t~~S~~p~~----~~~~G~~~--~~li~~li~~ 346 (357)
T 4fu0_A 315 TIPGFTSHSRYPNM----MKGIGLSF--SQMLDKLIGL 346 (357)
T ss_dssp SSCCCSTTCHHHHH----HHTTTCCH--HHHHHHHHHT
T ss_pred CCCCCCcccHHHHH----HHHhCcCH--HHHHHHHHHH
Confidence 56655 677776 67888874 3556777654
No 9
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=24.52 E-value=31 Score=21.81 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.5
Q ss_pred CcchhHHHHHhhhc
Q 035434 34 DAGATDNLRRLLRL 47 (48)
Q Consensus 34 dd~atdnLRRLLRL 47 (48)
+....+.|+|+||.
T Consensus 78 ~~~~~~~l~rlLr~ 91 (372)
T 1fp1_D 78 HSDLPNRLDRMLRL 91 (372)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHH
Confidence 44467889999984
No 10
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=24.52 E-value=22 Score=24.00 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=10.5
Q ss_pred cchhHHHHHhhhc
Q 035434 35 AGATDNLRRLLRL 47 (48)
Q Consensus 35 d~atdnLRRLLRL 47 (48)
-||+-.|||.||+
T Consensus 353 kGAAg~~~~~~~~ 365 (367)
T 1t4b_A 353 WGAAEPLRRMLRQ 365 (367)
T ss_dssp CCCCHHHHHHHHH
T ss_pred hchhHHHHHHHHh
Confidence 4788889999874
No 11
>3h0g_C DNA-directed RNA polymerase II subunit RPB3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.68 E-value=26 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=12.9
Q ss_pred ccCcchhHHHHHhh
Q 035434 32 GVDAGATDNLRRLL 45 (48)
Q Consensus 32 gvdd~atdnLRRLL 45 (48)
|+|..-+|.|||+|
T Consensus 23 g~~~tiaNALRRiL 36 (297)
T 3h0g_C 23 NTSLAVANSLRRVV 36 (297)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH
Confidence 88888999999997
No 12
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=23.17 E-value=17 Score=19.14 Aligned_cols=10 Identities=60% Similarity=1.059 Sum_probs=8.8
Q ss_pred ccchhhhccC
Q 035434 25 SCNAEAAGVD 34 (48)
Q Consensus 25 ~CnaEaagvd 34 (48)
||.+|..||.
T Consensus 21 sck~e~ngv~ 30 (37)
T 1dl0_A 21 SCKAESNGVS 30 (37)
T ss_dssp EEEECTTSCE
T ss_pred ccccCcCCce
Confidence 8999999885
No 13
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=22.44 E-value=29 Score=23.69 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=13.1
Q ss_pred ccCcchhHHHHHhh
Q 035434 32 GVDAGATDNLRRLL 45 (48)
Q Consensus 32 gvdd~atdnLRRLL 45 (48)
|++..-+|.|||+|
T Consensus 24 G~~~tlaNALRRiL 37 (318)
T 1twf_C 24 NVDLAMANSLRRVM 37 (318)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHH
Confidence 89999999999997
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=21.88 E-value=35 Score=20.62 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=11.0
Q ss_pred hhhccCcchhHHHHHhhhc
Q 035434 29 EAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 29 Eaagvdd~atdnLRRLLRL 47 (48)
+..|++ .+.++|+||.
T Consensus 47 ~~~~~~---~~~l~r~L~~ 62 (335)
T 2r3s_A 47 QKCQTS---ERGMRMLCDY 62 (335)
T ss_dssp HHHTCC---HHHHHHHHHH
T ss_pred HHhCCC---chHHHHHHHH
Confidence 334554 6789999884
Done!