Query 035434
Match_columns 48
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 04:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035434.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035434hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrxa1 a.43.1.7 (A:1-35) SeqA 75.4 0.65 4.7E-05 23.2 1.5 15 33-47 21-35 (35)
2 d1fp2a1 a.4.5.29 (A:8-108) Iso 69.8 0.97 7.1E-05 24.7 1.5 20 28-47 51-70 (101)
3 d1dl0a_ g.3.6.2 (A:) J-atracot 47.3 1.8 0.00013 21.6 -0.0 11 25-35 21-31 (37)
4 d1twfc1 d.74.3.1 (C:3-41,C:173 46.6 3.1 0.00023 24.6 1.0 20 26-45 16-35 (135)
5 d1kyza1 a.4.5.29 (A:13-119) Ca 28.1 10 0.00075 21.0 1.1 11 37-47 61-71 (107)
6 d1tw3a1 a.4.5.29 (A:14-98) Car 26.8 14 0.001 18.7 1.4 16 29-47 42-57 (85)
7 d1l0wa3 d.104.1.1 (A:105-294,A 26.3 17 0.0013 22.4 2.0 17 32-48 13-32 (356)
8 d1nxza1 b.122.1.2 (A:2-73) Hyp 24.9 11 0.00082 18.4 0.8 33 14-48 2-34 (72)
9 d1fp1d1 a.4.5.29 (D:19-128) Ch 24.9 16 0.0011 20.4 1.5 14 34-47 60-73 (110)
10 d1ybea1 c.1.17.2 (A:168-433) N 17.1 23 0.0017 22.1 1.2 37 11-47 218-261 (266)
No 1
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=75.39 E-value=0.65 Score=23.25 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=12.2
Q ss_pred cCcchhHHHHHhhhc
Q 035434 33 VDAGATDNLRRLLRL 47 (48)
Q Consensus 33 vdd~atdnLRRLLRL 47 (48)
+..+|.|-|||||.|
T Consensus 21 iGEsaSdILRRll~l 35 (35)
T d1xrxa1 21 IGESASDILRRMLKF 35 (35)
T ss_dssp TTCCHHHHHHHHHTC
T ss_pred hccCHHHHHHHHhcC
Confidence 456688999999976
No 2
>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=69.75 E-value=0.97 Score=24.66 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.0
Q ss_pred hhhhccCcchhHHHHHhhhc
Q 035434 28 AEAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 28 aEaagvdd~atdnLRRLLRL 47 (48)
|++.|++....+.|+|+||+
T Consensus 51 a~~~~~~~~~~~~L~RlLR~ 70 (101)
T d1fp2a1 51 VSILQVPSSKIGNVRRLMRY 70 (101)
T ss_dssp HHHHTCCGGGHHHHHHHHHH
T ss_pred HHHcCCCCccchHHHHHHHH
Confidence 44557766677899999984
No 3
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=47.27 E-value=1.8 Score=21.63 Aligned_cols=11 Identities=55% Similarity=0.897 Sum_probs=9.4
Q ss_pred ccchhhhccCc
Q 035434 25 SCNAEAAGVDA 35 (48)
Q Consensus 25 ~CnaEaagvdd 35 (48)
||.||..||+-
T Consensus 21 sckaesngvsy 31 (37)
T d1dl0a_ 21 SCKAESNGVSY 31 (37)
T ss_dssp EEEECTTSCEE
T ss_pred ceecccCCcce
Confidence 89999999863
No 4
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.63 E-value=3.1 Score=24.62 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.6
Q ss_pred cchhhhccCcchhHHHHHhh
Q 035434 26 CNAEAAGVDAGATDNLRRLL 45 (48)
Q Consensus 26 CnaEaagvdd~atdnLRRLL 45 (48)
..-+-.|+|.+-+|.|||++
T Consensus 16 ~~F~l~~~d~s~ANalRRi~ 35 (135)
T d1twfc1 16 VDFILSNVDLAMANSLRRVM 35 (135)
T ss_dssp ECCEEBSSCHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHH
Confidence 34445688889999999986
No 5
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=28.06 E-value=10 Score=20.96 Aligned_cols=11 Identities=55% Similarity=0.646 Sum_probs=9.1
Q ss_pred hhHHHHHhhhc
Q 035434 37 ATDNLRRLLRL 47 (48)
Q Consensus 37 atdnLRRLLRL 47 (48)
+...|+|+||+
T Consensus 61 ~~~~L~RilR~ 71 (107)
T d1kyza1 61 APVMLDRMLRL 71 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 56789999996
No 6
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=26.81 E-value=14 Score=18.74 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=10.6
Q ss_pred hhhccCcchhHHHHHhhhc
Q 035434 29 EAAGVDAGATDNLRRLLRL 47 (48)
Q Consensus 29 Eaagvdd~atdnLRRLLRL 47 (48)
+..|+| .+.++||||.
T Consensus 42 ~~~g~~---~~~l~rlLr~ 57 (85)
T d1tw3a1 42 ARTDTR---PEALLRLIRH 57 (85)
T ss_dssp HHHTCC---HHHHHHHHHH
T ss_pred HHhCcC---hhHHHHHHHH
Confidence 334555 5788999873
No 7
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=26.29 E-value=17 Score=22.42 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=11.3
Q ss_pred ccCcchhHHHH---HhhhcC
Q 035434 32 GVDAGATDNLR---RLLRLR 48 (48)
Q Consensus 32 gvdd~atdnLR---RLLRLr 48 (48)
..|..|..++| |.|.||
T Consensus 13 ~~~~~~~~~~Rl~~R~LdLR 32 (356)
T d1l0wa3 13 EEEKEASEELRLKYRYLDLR 32 (356)
T ss_dssp CCCCCCCHHHHHHTHHHHTT
T ss_pred ccccccCHHHHhhchhhhhC
Confidence 34455566788 888776
No 8
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=24.94 E-value=11 Score=18.40 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=20.1
Q ss_pred cccccccccccccchhhhccCcchhHHHHHhhhcC
Q 035434 14 SGEFALRPKLISCNAEAAGVDAGATDNLRRLLRLR 48 (48)
Q Consensus 14 lP~FSlk~K~~~CnaEaagvdd~atdnLRRLLRLr 48 (48)
+|+|=+..++ .-+.+ .-.|+....-|.|+||++
T Consensus 2 ipR~f~~~~l-~~~~~-i~L~~~~~hHl~~VLR~k 34 (72)
T d1nxza1 2 IPRIYHPISL-ENQTQ-CYLSEDAANHVARVLRMT 34 (72)
T ss_dssp CCEEECSSCC-TTCSE-EECCHHHHHHHHTTSCCC
T ss_pred CccEEcCccc-CCCCE-EEcCHHHHHHHHheeCCC
Confidence 4777655544 22222 235666778889999875
No 9
>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=24.92 E-value=16 Score=20.36 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.5
Q ss_pred CcchhHHHHHhhhc
Q 035434 34 DAGATDNLRRLLRL 47 (48)
Q Consensus 34 dd~atdnLRRLLRL 47 (48)
+..+...|.|+||+
T Consensus 60 ~p~~~~~L~RiLRl 73 (110)
T d1fp1d1 60 HSDLPNRLDRMLRL 73 (110)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 34456789999996
No 10
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=17.15 E-value=23 Score=22.07 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=24.7
Q ss_pred ccccccccccccccccchhhh-------ccCcchhHHHHHhhhc
Q 035434 11 CYASGEFALRPKLISCNAEAA-------GVDAGATDNLRRLLRL 47 (48)
Q Consensus 11 ~lPlP~FSlk~K~~~CnaEaa-------gvdd~atdnLRRLLRL 47 (48)
|.-.|.++++-|+..||.+.. |+.-+.-..+||.+|+
T Consensus 218 ~~~~p~l~~VyKLve~~g~P~~KlSd~~~K~tg~~~~~~~~~r~ 261 (266)
T d1ybea1 218 IASLKPISIVCKVSDANGRPAVKLSDNPQKATGDPAEVERYLKF 261 (266)
T ss_dssp ---CCCCCEEEEEEEETTEECCBCCSSGGGCBSCHHHHHHHHHH
T ss_pred cccCCCcceEEEeeeeCCeeeeEecCCCccccCCHHHHHHHHHH
Confidence 334588999999988876554 4555555678887774
Done!