BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035442
         (54 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZ6|D Chain D, Localization Of The Small Subunit Ribosomal Proteins
          Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
          Translating 80s Ribosome
          Length = 265

 Score = 35.8 bits (81), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 1  MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
          MAR LKKH KRLNA          G FAPKP     +   E +P I   +NRLK
Sbjct: 1  MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILIIRNRLK 53


>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type
          B From Trypanosoma Cruzi.
 pdb|3K7P|B Chain B, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type
          B From Trypanosoma Cruzi
          Length = 179

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 8  HQKRLNARGTCSGTFA--PKPLIPQTNSGSEFMPFICGPK 45
          H  R  A GT    FA     ++    +G EF+P  CGPK
Sbjct: 20 HMTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPK 59


>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From
          Trypanosoma Cruzi
 pdb|3K7O|B Chain B, Structure Of Type B Ribose 5-phosphate Isomerase From
          Trypanosoma Cruzi
 pdb|3K7S|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With Ribose 5-Phosphate
 pdb|3K7S|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With Ribose 5-Phosphate
 pdb|3K7S|C Chain C, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With Ribose 5-Phosphate
 pdb|3K7S|D Chain D, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With Ribose 5-Phosphate
 pdb|3K8C|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With
          4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
 pdb|3K8C|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
          Isomerase Type B With
          4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
          Length = 179

 Score = 26.2 bits (56), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 8  HQKRLNARGTCSGTFA--PKPLIPQTNSGSEFMPFICGPK 45
          H  R  A GT    FA     ++    +G EF+P  CGPK
Sbjct: 20 HMTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPK 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,761,010
Number of Sequences: 62578
Number of extensions: 52527
Number of successful extensions: 78
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 3
length of query: 54
length of database: 14,973,337
effective HSP length: 26
effective length of query: 28
effective length of database: 13,346,309
effective search space: 373696652
effective search space used: 373696652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)