BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035442
(54 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4
PE=2 SV=3
Length = 265
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR LKKH KRLNA G FAPKP + E +P I +NRLK
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILIIRNRLK 53
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1
Length = 262
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR LKKH KRLNA G FAPKP + E +P I +NRLK
Sbjct: 1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKP-SSGPHKSRECLPLILILRNRLK 53
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1
Length = 261
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR LKKH KRLNA G FAPKP + E +P I +NRLK
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILILRNRLK 53
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1
Length = 265
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR LKKH KRLNA G FAPKP + E +P I +NRLK
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLILIIRNRLK 53
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1
Length = 264
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 MARYLKKHQKRLNA-----RGTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLKPGRWY 54
MAR LKKH KRLNA G FAPKP + E +P + +NRLK Y
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKP-SSGPHKSRECLPLVIIMRNRLKYALTY 58
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2
SV=1
Length = 261
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 MARYLKKHQKRLNA-----RGTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLKPGRWY 54
MAR LKKH KRLNA G FAPKP + E +P + +NRLK Y
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPS-SGPHKSRECLPLVLIIRNRLKYALTY 58
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2
SV=2
Length = 262
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 MARYLKKHQKRLNA-----RGTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLKPGRWY 54
MAR LKKH KRLNA G FAPKP + E +P + +NRLK Y
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPS-SGPHKSRECLPLVLIIRNRLKYALTY 58
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2
SV=4
Length = 262
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 1 MARYLKKHQKRLNA-----RGTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLKPGRWY 54
MAR LKKH KRLNA G FAPKP + E +P + +NRLK Y
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPS-SGPHKSRECLPLVLIIRNRLKYALTY 58
>sp|Q9USW5|RS4B_SCHPO 40S ribosomal protein S4-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4b PE=1 SV=1
Length = 262
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
M R KKH KR+ A SGT+APKP P + E +P I +NRLK
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRLK 53
>sp|Q9P4W9|RS4C_SCHPO 40S ribosomal protein S4-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4c PE=1 SV=1
Length = 262
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
M R KKH KR+ A SGT+APKP P + E +P I +NRLK
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRLK 53
>sp|P87158|RS4A_SCHPO 40S ribosomal protein S4-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps4a PE=2 SV=2
Length = 262
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNAR-----GTCSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
M R KKH KR+ A SGT+APKP P + E +P I +NRLK
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKP-SPGPHKARECLPLIVFLRNRLK 53
>sp|Q4PMB3|RS4_IXOSC 40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1
Length = 262
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR KKH KRLNA + G FAP+P + E +P I +NRLK
Sbjct: 1 MARGPKKHLKRLNAPKSWMLDKLGGVFAPRPST-GPHKLRESLPLIIMLRNRLK 53
>sp|Q56FH2|RS4_LYSTE 40S ribosomal protein S4 OS=Lysiphlebus testaceipes GN=RpS4 PE=2
SV=1
Length = 262
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 14/58 (24%)
Query: 1 MARYLKKHQKRLNA-----RGTCSGTFAPKPLIPQTNSG----SEFMPFICGPKNRLK 49
MAR KKH KRLNA G G +AP+P ++G E +P + +NRLK
Sbjct: 1 MARGPKKHLKRLNAPKSWMLGKLGGVYAPRP-----STGPHKLRECLPLLIFLRNRLK 53
>sp|Q4GXU6|RS4_CARGR 40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1
Length = 261
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR KKH KRLNA G +AP+P + E +P + +NRLK
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPST-GPHKLRESLPLVIFLRNRLK 53
>sp|Q95V34|RS4_SPOFR 40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2
SV=1
Length = 263
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR KKH KRLNA G +AP+P + E +P + +NRLK
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPST-GPHKLRECLPLVIFLRNRLK 53
>sp|Q5UAP0|RS4_BOMMO 40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1
Length = 263
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 1 MARYLKKHQKRLNARGT-----CSGTFAPKPLIPQTNSGSEFMPFICGPKNRLK 49
MAR KKH KRLNA G +AP+P + E +P + +NRLK
Sbjct: 1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPST-GPHKLRECLPLVIFLRNRLK 53
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,026,661
Number of Sequences: 539616
Number of extensions: 648133
Number of successful extensions: 1004
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 16
length of query: 54
length of database: 191,569,459
effective HSP length: 27
effective length of query: 27
effective length of database: 176,999,827
effective search space: 4778995329
effective search space used: 4778995329
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)