Query 035442
Match_columns 54
No_of_seqs 106 out of 218
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 04:15:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035442.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035442hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzja_ c.26.1.1 (A:) Glutamyl 8.0 54 0.004 19.9 0.7 10 20-31 5-14 (286)
2 d1b3ta_ d.58.8.1 (A:) Epstein 8.0 69 0.005 19.1 1.2 27 17-44 78-106 (147)
3 d1ffva2 d.15.4.2 (A:3-81) Carb 7.1 26 0.0019 18.5 -1.0 15 37-51 20-34 (79)
4 d2ifqa1 c.47.1.1 (A:1-105) Thi 6.6 95 0.0069 15.4 1.2 12 36-47 72-83 (105)
5 d2p8ia1 d.58.55.1 (A:1-115) Pu 6.4 81 0.0059 17.7 0.9 15 19-35 43-57 (115)
6 d1t3qa2 d.15.4.2 (A:7-87) Quin 6.3 30 0.0022 18.2 -1.0 15 37-51 22-36 (81)
7 d1gtra2 c.26.1.1 (A:8-338) Glu 6.1 76 0.0055 19.7 0.7 9 21-31 23-31 (331)
8 d1n62a2 d.15.4.2 (A:3-81) Carb 5.8 34 0.0025 18.0 -1.0 15 37-51 20-34 (79)
9 d1syra_ c.47.1.1 (A:) Thioredo 5.6 1.1E+02 0.0083 14.9 1.1 12 36-47 70-81 (103)
10 d1vlba2 d.15.4.2 (A:1-80) Alde 5.5 41 0.003 17.7 -0.8 16 36-51 19-34 (80)
No 1
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}
Probab=7.98 E-value=54 Score=19.86 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=7.1
Q ss_pred cccccCCCCCCC
Q 035442 20 GTFAPKPLIPQT 31 (54)
Q Consensus 20 ~~~a~kps~pGP 31 (54)
+-|||.|+ |+
T Consensus 5 tRFAPsPt--G~ 14 (286)
T d1nzja_ 5 GRFAPSPS--GE 14 (286)
T ss_dssp EEECCCTT--SC
T ss_pred EeeCcCCC--Cc
Confidence 35888887 65
No 2
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=7.97 E-value=69 Score=19.10 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=16.9
Q ss_pred ccccccccCCCCCCCCCCCCccc--eeeee
Q 035442 17 TCSGTFAPKPLIPQTNSGSEFMP--FICGP 44 (54)
Q Consensus 17 k~~~~~a~kps~pGPH~~~~slP--L~i~l 44 (54)
++-.-+++-|- |.|-+++||.- +++||
T Consensus 78 RLPyG~a~gpG-PqPgPl~ES~~~yFlvFl 106 (147)
T d1b3ta_ 78 RLPFGMAPGPG-PQPGPLRESIVCYFMVFL 106 (147)
T ss_dssp EEECCCCSSSS-CCCCTTCEEEEEEEEEEE
T ss_pred ccccCcCCCCC-CCCCcchhheeeeeeeee
Confidence 44444677777 77777888864 34444
No 3
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=7.11 E-value=26 Score=18.48 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=12.1
Q ss_pred ccceeeeecccccCc
Q 035442 37 FMPFICGPKNRLKPG 51 (54)
Q Consensus 37 slPL~i~lRd~Lk~A 51 (54)
..+|+-+||+.|++-
T Consensus 20 ~~~Ll~~LR~~~gl~ 34 (79)
T d1ffva2 20 RTLLIHFLREELNLT 34 (79)
T ss_dssp TCBHHHHHHHTSCCT
T ss_pred CCCHHHHHhhhcCCc
Confidence 567889999988764
No 4
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.61 E-value=95 Score=15.37 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=9.5
Q ss_pred Cccceeeeeccc
Q 035442 36 EFMPFICGPKNR 47 (54)
Q Consensus 36 ~slPL~i~lRd~ 47 (54)
+++|-+++++|-
T Consensus 72 ~~~Pt~~~~~~G 83 (105)
T d2ifqa1 72 KCMPTFQFFKKG 83 (105)
T ss_dssp CBSSEEEEEETT
T ss_pred eEEEEEEEEECC
Confidence 588988888873
No 5
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=6.45 E-value=81 Score=17.72 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.9
Q ss_pred ccccccCCCCCCCCCCC
Q 035442 19 SGTFAPKPLIPQTNSGS 35 (54)
Q Consensus 19 ~~~~a~kps~pGPH~~~ 35 (54)
.|.|--+|- |||+..
T Consensus 43 ~gr~~~kpV--GPHp~~ 57 (115)
T d2p8ia1 43 LGRFHERPV--GPHPMW 57 (115)
T ss_dssp ECCCBSSCC--TTCSSE
T ss_pred EeecccCcc--CCCCCe
Confidence 367888887 999865
No 6
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=6.26 E-value=30 Score=18.23 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=11.8
Q ss_pred ccceeeeecccccCc
Q 035442 37 FMPFICGPKNRLKPG 51 (54)
Q Consensus 37 slPL~i~lRd~Lk~A 51 (54)
..+|+-+|||.|++-
T Consensus 22 ~~~Ll~~LR~~l~lt 36 (81)
T d1t3qa2 22 RMHLADALREVVGLT 36 (81)
T ss_dssp TSBHHHHHHHTTCCT
T ss_pred CCCHHHHHhhhhCCc
Confidence 567888999988763
No 7
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=6.10 E-value=76 Score=19.71 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=6.8
Q ss_pred ccccCCCCCCC
Q 035442 21 TFAPKPLIPQT 31 (54)
Q Consensus 21 ~~a~kps~pGP 31 (54)
-|||.|+ |+
T Consensus 23 RFAPSPT--G~ 31 (331)
T d1gtra2 23 RFPPEPN--GY 31 (331)
T ss_dssp EECCCSS--SC
T ss_pred EeCCCCC--Cc
Confidence 4899888 65
No 8
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=5.85 E-value=34 Score=18.00 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=12.0
Q ss_pred ccceeeeecccccCc
Q 035442 37 FMPFICGPKNRLKPG 51 (54)
Q Consensus 37 slPL~i~lRd~Lk~A 51 (54)
..+|+-+|||.+++-
T Consensus 20 ~~~Ll~~LR~~~~lt 34 (79)
T d1n62a2 20 RTLLIHFIREQQNLT 34 (79)
T ss_dssp TCBHHHHHHHTSCCT
T ss_pred CCcHHHHHhhhcCCc
Confidence 457889999998864
No 9
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=5.59 E-value=1.1e+02 Score=14.92 Aligned_cols=12 Identities=33% Similarity=0.130 Sum_probs=9.1
Q ss_pred Cccceeeeeccc
Q 035442 36 EFMPFICGPKNR 47 (54)
Q Consensus 36 ~slPL~i~lRd~ 47 (54)
.++|-+++++|-
T Consensus 70 ~~~Pt~i~~k~G 81 (103)
T d1syra_ 70 TSMPTFKVYKNG 81 (103)
T ss_dssp CSSSEEEEEETT
T ss_pred ecceEEEEEECC
Confidence 478888888763
No 10
>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=5.47 E-value=41 Score=17.72 Aligned_cols=16 Identities=6% Similarity=-0.228 Sum_probs=12.3
Q ss_pred CccceeeeecccccCc
Q 035442 36 EFMPFICGPKNRLKPG 51 (54)
Q Consensus 36 ~slPL~i~lRd~Lk~A 51 (54)
...+|+=+|||.|++-
T Consensus 19 ~~~~Lld~LR~~lglt 34 (80)
T d1vlba2 19 AEALLSDVLRQQLGLT 34 (80)
T ss_dssp TTSBHHHHHHHTTCCT
T ss_pred CCCCHHHHHhHhhCCc
Confidence 3567888999998864
Done!