BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035443
MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT
GKKQQ

High Scoring Gene Products

Symbol, full name Information P value
AT2G46540 protein from Arabidopsis thaliana 2.6e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035443
        (65 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2039998 - symbol:AT2G46540 "AT2G46540" species...   259  2.6e-22   1


>TAIR|locus:2039998 [details] [associations]
            symbol:AT2G46540 "AT2G46540" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] GO:GO:0005739
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020 EMBL:AC006418
            UniGene:At.13830 EMBL:AY050333 EMBL:AY094041 EMBL:AY086522
            IPI:IPI00517345 RefSeq:NP_566079.1 STRING:Q9ZPY5 PaxDb:Q9ZPY5
            PRIDE:Q9ZPY5 EnsemblPlants:AT2G46540.1 GeneID:819266
            KEGG:ath:AT2G46540 TAIR:At2g46540 eggNOG:NOG280739
            HOGENOM:HOG000006443 InParanoid:Q9ZPY5 OMA:ASCFIAG PhylomeDB:Q9ZPY5
            ProtClustDB:CLSN2688968 Genevestigator:Q9ZPY5 Uniprot:Q9ZPY5
        Length = 65

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 52/64 (81%), Positives = 57/64 (89%)

Query:     1 MAVMEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRPMLDSFESSKQVPQPALSDVVAGVT 60
             M VMEKLRMFVAQEPVVAASCL+G  GLFLPAVVRP+LDS E+SKQV  P L+DV+AGVT
Sbjct:     1 MPVMEKLRMFVAQEPVVAASCLIGGVGLFLPAVVRPILDSLEASKQVKAPPLTDVIAGVT 60

Query:    61 GKKQ 64
             GKKQ
Sbjct:    61 GKKQ 64


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.133   0.371    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       65        65   0.00091  102 3  11 22  0.36    28
                                                     29  0.46    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  390 (42 KB)
  Total size of DFA:  63 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.83u 0.16s 6.99t   Elapsed:  00:00:01
  Total cpu time:  6.83u 0.16s 6.99t   Elapsed:  00:00:01
  Start:  Thu May  9 16:11:52 2013   End:  Thu May  9 16:11:53 2013

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