Query 035443
Match_columns 65
No_of_seqs 22 out of 24
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 04:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dw3_A Intrinsic membrane prot 66.5 2.1 7.2E-05 26.8 1.1 20 23-52 47-66 (77)
2 2nrg_A Intrinsic membrane prot 61.2 3 0.0001 26.4 1.1 20 23-52 48-67 (82)
3 3arc_I Photosystem II reaction 58.6 5 0.00017 22.3 1.6 23 4-26 1-23 (38)
4 2l97_A HTRA, putative serine p 57.9 2.6 8.8E-05 25.7 0.4 29 24-52 2-31 (134)
5 2g3v_A CAG pathogenicity islan 25.4 23 0.00078 25.2 1.0 32 10-41 102-134 (208)
6 2hi6_A UPF0107 protein AF0055; 23.3 18 0.00063 23.9 0.1 20 12-35 86-105 (141)
7 3lgi_A Protease DEGS; stress-s 20.6 17 0.00059 23.5 -0.4 29 24-52 205-234 (237)
8 3ajm_A Programmed cell death p 18.9 23 0.00079 25.4 -0.1 18 27-44 12-29 (213)
9 2jg6_A DNA-3-methyladenine gly 15.5 53 0.0018 22.7 1.1 35 24-58 110-147 (186)
10 1jb0_J Photosystem 1 reaction 14.3 64 0.0022 17.8 1.0 25 4-28 1-25 (41)
No 1
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=66.48 E-value=2.1 Score=26.79 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=15.8
Q ss_pred hhhhcchhhhhhhhhhhccccCCCCCCCch
Q 035443 23 MGAFGLFLPAVVRPMLDSFESSKQVPQPAL 52 (65)
Q Consensus 23 I~G~GLfLpAvVrPilds~e~sk~vp~p~L 52 (65)
++++|++|| |.|++.|.|..
T Consensus 47 l~~iG~~LP----------E~Sr~aP~P~~ 66 (77)
T 2dw3_A 47 FRVVGRMLP----------IQENQAPAPNI 66 (77)
T ss_dssp HHHHHHCTT----------TTCSSCSSCCS
T ss_pred HHHHHHhCc----------hhcccCCCCcc
Confidence 356788888 78999998864
No 2
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=61.21 E-value=3 Score=26.41 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=16.0
Q ss_pred hhhhcchhhhhhhhhhhccccCCCCCCCch
Q 035443 23 MGAFGLFLPAVVRPMLDSFESSKQVPQPAL 52 (65)
Q Consensus 23 I~G~GLfLpAvVrPilds~e~sk~vp~p~L 52 (65)
++++|++|| |.|++.|.|..
T Consensus 48 l~~iG~~LP----------E~Sr~aP~P~~ 67 (82)
T 2nrg_A 48 FRVVGRMLP----------IQENQAPAPNI 67 (82)
T ss_dssp HHHHHHSST----------TTTTCCSSSSS
T ss_pred HHHHHHhCc----------hhcccCCCCcc
Confidence 456788888 88999998864
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=58.57 E-value=5 Score=22.34 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=16.6
Q ss_pred HHHHHHHHhhchhhhhhhhhhhh
Q 035443 4 MEKLRMFVAQEPVVAASCLMGAF 26 (65)
Q Consensus 4 meklr~fv~qEPVvaaSclI~G~ 26 (65)
|-.||++|+--=....|++|.||
T Consensus 1 MltLKi~Vy~vV~ffvsLFiFGf 23 (38)
T 3arc_I 1 METLKITVYIVVTFFVLLFVFGF 23 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEeeehhHHHHHHHHHHccc
Confidence 45689998876666677777765
No 4
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=57.95 E-value=2.6 Score=25.65 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=22.9
Q ss_pred hhhcchhhh-hhhhhhhccccCCCCCCCch
Q 035443 24 GAFGLFLPA-VVRPMLDSFESSKQVPQPAL 52 (65)
Q Consensus 24 ~G~GLfLpA-vVrPilds~e~sk~vp~p~L 52 (65)
-|+|.++|. .++++++++.....+..|.|
T Consensus 2 ~GigFAIP~~~~~~v~~~L~~~G~v~r~~L 31 (134)
T 2l97_A 2 EGLGFAIPANDAINIIEQLEKNGKVTRPAL 31 (134)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCSSCCCC
T ss_pred CcEEEEeEHHHHHHHHHHHHHcCCEeeeEe
Confidence 488999997 56999999987777766654
No 5
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=25.44 E-value=23 Score=25.22 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=21.6
Q ss_pred HHhhchhhhhhhhh-hhhcchhhhhhhhhhhcc
Q 035443 10 FVAQEPVVAASCLM-GAFGLFLPAVVRPMLDSF 41 (65)
Q Consensus 10 fv~qEPVvaaSclI-~G~GLfLpAvVrPilds~ 41 (65)
.++..|-...|-+= .-+|+|||-|-+||+-.+
T Consensus 102 aiaenpnflfskfdrsilgiflpffskpimfkm 134 (208)
T 2g3v_A 102 AIAENPNFLFSKFDRSILGIFLPFFSKPIMFKM 134 (208)
T ss_dssp HHHHCTTSSCBGGGGGGGGGTGGGTCHHHHHHS
T ss_pred HHHhCCchhHHhhhHHHHHHhhHhcccchhhHh
Confidence 45566665555432 236899999999997544
No 6
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=23.29 E-value=18 Score=23.95 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=15.7
Q ss_pred hhchhhhhhhhhhhhcchhhhhhh
Q 035443 12 AQEPVVAASCLMGAFGLFLPAVVR 35 (65)
Q Consensus 12 ~qEPVvaaSclI~G~GLfLpAvVr 35 (65)
-.||+++..|+|++ .|.+-+
T Consensus 86 ~~e~Il~~Gaiva~----IP~vd~ 105 (141)
T 2hi6_A 86 KTETIIAVGAAMAE----IPLVEV 105 (141)
T ss_dssp SCCHHHHHHHHHHT----CCEEEC
T ss_pred CcchhhhhhhheeC----CceEec
Confidence 35899999999999 565534
No 7
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=20.57 E-value=17 Score=23.46 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=22.0
Q ss_pred hhhcchhhh-hhhhhhhccccCCCCCCCch
Q 035443 24 GAFGLFLPA-VVRPMLDSFESSKQVPQPAL 52 (65)
Q Consensus 24 ~G~GLfLpA-vVrPilds~e~sk~vp~p~L 52 (65)
.|+|+++|+ .++++++.+....+.|.+.+
T Consensus 205 ~g~~~aip~~~i~~~~~~l~~~g~~~~~~~ 234 (237)
T 3lgi_A 205 EGIGFAIPFQLATKIMDKLIRDGRVIRHHH 234 (237)
T ss_dssp CSCEEEEEHHHHHHHHHHHHHHSSCCC---
T ss_pred CceEEEEEHHHHHHHHHHHHHcCCCCCchh
Confidence 368999997 66999999988888886543
No 8
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=18.92 E-value=23 Score=25.37 Aligned_cols=18 Identities=28% Similarity=0.443 Sum_probs=15.2
Q ss_pred cchhhhhhhhhhhccccC
Q 035443 27 GLFLPAVVRPMLDSFESS 44 (65)
Q Consensus 27 GLfLpAvVrPilds~e~s 44 (65)
.+.||.++||++|.++..
T Consensus 12 ~~~L~~l~~P~l~kle~~ 29 (213)
T 3ajm_A 12 SMPLYAVMYPVFNELERV 29 (213)
T ss_dssp GHHHHHTHHHHHHHHHHH
T ss_pred hhcchhhHHHHHHHHHhh
Confidence 356999999999998865
No 9
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=15.55 E-value=53 Score=22.66 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.5
Q ss_pred hhhcchhhhhh--hhhhhccccCCCCC-CCchHHhhhh
Q 035443 24 GAFGLFLPAVV--RPMLDSFESSKQVP-QPALSDVVAG 58 (65)
Q Consensus 24 ~G~GLfLpAvV--rPilds~e~sk~vp-~p~L~dVvag 58 (65)
++|.-+|=.+| +|+...+.+..++| +..+||.++-
T Consensus 110 gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsK 147 (186)
T 2jg6_A 110 GSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSK 147 (186)
T ss_dssp SCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHH
T ss_pred CCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHH
Confidence 46777777888 69988888888999 6668888763
No 10
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=14.26 E-value=64 Score=17.82 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=18.5
Q ss_pred HHHHHHHHhhchhhhhhhhhhhhcc
Q 035443 4 MEKLRMFVAQEPVVAASCLMGAFGL 28 (65)
Q Consensus 4 meklr~fv~qEPVvaaSclI~G~GL 28 (65)
|+.++.|..--||++...+..-.|+
T Consensus 1 m~~f~kyLstAPVla~~w~~~tAg~ 25 (41)
T 1jb0_J 1 MKHFLTYLSTAPVLAAIWMTITAGI 25 (41)
T ss_dssp CHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHH
Confidence 5678999999999987665544444
Done!