Query 035443
Match_columns 65
No_of_seqs 22 out of 24
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 04:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axti1 f.23.37.1 (I:1-35) Pho 63.4 1.1 8.2E-05 23.3 0.9 23 4-26 1-23 (35)
2 d3b60a2 f.37.1.1 (A:10-328) Mu 28.4 15 0.0011 20.8 1.9 28 18-45 23-50 (319)
3 d1ng7a_ a.178.1.1 (A:) Soluble 26.2 11 0.00082 21.1 1.0 28 31-60 3-30 (60)
4 d2hyda2 f.37.1.1 (A:1-323) Put 24.5 16 0.0012 20.8 1.5 32 17-48 20-51 (323)
5 d1jb0j_ f.23.18.1 (J:) Subunit 23.9 13 0.00098 19.5 1.0 25 4-28 1-25 (41)
6 d1q90n_ f.23.27.1 (N:) PetN su 16.5 25 0.0018 17.4 1.0 18 17-34 8-25 (31)
7 d2a5yb1 a.4.5.80 (B:386-543) C 15.5 19 0.0014 23.1 0.5 11 13-23 19-29 (158)
8 d2gupa1 c.55.1.10 (A:1-114) Hy 12.5 30 0.0022 18.6 0.7 26 4-36 40-65 (114)
9 d3dcxa1 b.55.1.13 (A:9-124) Un 11.8 24 0.0017 21.2 0.1 9 56-64 48-56 (116)
10 d1fvia2 d.142.2.1 (A:2-189) AT 8.3 32 0.0023 19.6 -0.3 9 32-40 1-9 (188)
No 1
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=63.40 E-value=1.1 Score=23.35 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHhhchhhhhhhhhhhh
Q 035443 4 MEKLRMFVAQEPVVAASCLMGAF 26 (65)
Q Consensus 4 meklr~fv~qEPVvaaSclI~G~ 26 (65)
|..||++|+--=....|++|.||
T Consensus 1 MltLKi~Vy~vV~fFv~lFiFGF 23 (35)
T d2axti1 1 METLKITVYIVVTFFVLLFVFGF 23 (35)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEehhhHHHHHHHHHHHhh
Confidence 45689999987777778888886
No 2
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=28.44 E-value=15 Score=20.77 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=20.7
Q ss_pred hhhhhhhhhcchhhhhhhhhhhccccCC
Q 035443 18 AASCLMGAFGLFLPAVVRPMLDSFESSK 45 (65)
Q Consensus 18 aaSclI~G~GLfLpAvVrPilds~e~sk 45 (65)
..+++.+++.++.|.+++.+.|+.-.++
T Consensus 23 i~~~~~~~~~~~~~~~~~~~id~~~~~~ 50 (319)
T d3b60a2 23 IALILNAASDTFMLSLLKPLLDDGFGKT 50 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSSTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445567788899999999999865443
No 3
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=26.19 E-value=11 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=20.0
Q ss_pred hhhhhhhhhccccCCCCCCCchHHhhhhcc
Q 035443 31 PAVVRPMLDSFESSKQVPQPALSDVVAGVT 60 (65)
Q Consensus 31 pAvVrPilds~e~sk~vp~p~L~dVvag~t 60 (65)
|-+-|++-.|.. ...|||+++|.+..+-
T Consensus 3 Pp~yk~l~I~v~--~tPpP~aI~DLLkSVD 30 (60)
T d1ng7a_ 3 PLQYKDLKIDIK--TSPPPECINDLLQAVD 30 (60)
T ss_dssp SSCCCCCSCCCS--CCCSSTTTHHHHHHHC
T ss_pred CCcccceEeeeC--CCCCChHHHHHHHhcC
Confidence 445678888864 3466888999988763
No 4
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=24.54 E-value=16 Score=20.76 Aligned_cols=32 Identities=6% Similarity=0.262 Sum_probs=23.8
Q ss_pred hhhhhhhhhhcchhhhhhhhhhhccccCCCCC
Q 035443 17 VAASCLMGAFGLFLPAVVRPMLDSFESSKQVP 48 (65)
Q Consensus 17 vaaSclI~G~GLfLpAvVrPilds~e~sk~vp 48 (65)
+..+++.+++.+..|.+.+.+.|+....+...
T Consensus 20 ~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~ 51 (323)
T d2hyda2 20 IIVGIIKFGIPMLIPLLIKYAIDGVINNHALT 51 (323)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 34566667788889999999999976655443
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=23.86 E-value=13 Score=19.49 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.1
Q ss_pred HHHHHHHHhhchhhhhhhhhhhhcc
Q 035443 4 MEKLRMFVAQEPVVAASCLMGAFGL 28 (65)
Q Consensus 4 meklr~fv~qEPVvaaSclI~G~GL 28 (65)
|+.++++..--||++...+..--|+
T Consensus 1 M~~~~~ylstAPVla~~w~~~tAG~ 25 (41)
T d1jb0j_ 1 MKHFLTYLSTAPVLAAIWMTITAGI 25 (41)
T ss_dssp CHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhhhHHHHHHHHHHHHHH
Confidence 6789999999999987666544443
No 6
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=16.47 E-value=25 Score=17.43 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.0
Q ss_pred hhhhhhhhhhcchhhhhh
Q 035443 17 VAASCLMGAFGLFLPAVV 34 (65)
Q Consensus 17 vaaSclI~G~GLfLpAvV 34 (65)
++|..+.+-|...|..||
T Consensus 8 ~awaa~~atfsfslslvv 25 (31)
T d1q90n_ 8 IGWAATCVMFSFSLSLVV 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhheeeEEEEE
Confidence 578888888888888877
No 7
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.50 E-value=19 Score=23.11 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=8.7
Q ss_pred hchhhhhhhhh
Q 035443 13 QEPVVAASCLM 23 (65)
Q Consensus 13 qEPVvaaSclI 23 (65)
.-||-.|||.|
T Consensus 19 dipvk~wscvi 29 (158)
T d2a5yb1 19 DIPVKLWSCVI 29 (158)
T ss_dssp CEEHHHHHHHS
T ss_pred ccceeEEEEee
Confidence 34788999987
No 8
>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=12.47 E-value=30 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=18.0
Q ss_pred HHHHHHHHhhchhhhhhhhhhhhcchhhhhhhh
Q 035443 4 MEKLRMFVAQEPVVAASCLMGAFGLFLPAVVRP 36 (65)
Q Consensus 4 meklr~fv~qEPVvaaSclI~G~GLfLpAvVrP 36 (65)
.+.++.++.+++ |.|+|+..|..|-+
T Consensus 40 ~~~i~~~~~~~~-------i~gIGi~~pG~vd~ 65 (114)
T d2gupa1 40 LAWLDQRLSEQD-------YSGIAMSVPGAVNQ 65 (114)
T ss_dssp HHHHHHHHTTSC-------CSEEEEEESSEECT
T ss_pred HHHHHHHhhhcc-------cceEEEeccccccC
Confidence 445555665554 46899999999855
No 9
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}
Probab=11.77 E-value=24 Score=21.21 Aligned_cols=9 Identities=67% Similarity=0.818 Sum_probs=6.7
Q ss_pred hhhcccccc
Q 035443 56 VAGVTGKKQ 64 (65)
Q Consensus 56 vag~tgKk~ 64 (65)
.-|+||||.
T Consensus 48 ~qg~tGkK~ 56 (116)
T d3dcxa1 48 KQGVTGKKV 56 (116)
T ss_dssp EESSSCCEE
T ss_pred ccccccceE
Confidence 358888885
No 10
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]}
Probab=8.31 E-value=32 Score=19.63 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=6.3
Q ss_pred hhhhhhhhc
Q 035443 32 AVVRPMLDS 40 (65)
Q Consensus 32 AvVrPilds 40 (65)
|++||||-+
T Consensus 1 ~~~~PMLA~ 9 (188)
T d1fvia2 1 AITKPLLAA 9 (188)
T ss_dssp CCSSCCBCE
T ss_pred CCCCcccCC
Confidence 567888854
Done!