BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035444
MRKFDPWPIFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKK

High Scoring Gene Products

Symbol, full name Information P value
AT3G46430 protein from Arabidopsis thaliana 7.2e-20
AT5G59613 protein from Arabidopsis thaliana 7.2e-20
DDB_G0275383
transmembrane protein
gene from Dictyostelium discoideum 0.00017

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035444
        (55 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2078201 - symbol:AT3G46430 "AT3G46430" species...   236  7.2e-20   1
TAIR|locus:504954866 - symbol:AT5G59613 "AT5G59613" speci...   236  7.2e-20   1
DICTYBASE|DDB_G0275383 - symbol:DDB_G0275383 "transmembra...    91  0.00017   1


>TAIR|locus:2078201 [details] [associations]
            symbol:AT3G46430 "AT3G46430" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005750 "mitochondrial respiratory chain complex
            III" evidence=IDA] [GO:0005753 "mitochondrial proton-transporting
            ATP synthase complex" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=RCA] [GO:0009853 "photorespiration" evidence=RCA]
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005753 GO:GO:0005750 EMBL:AL133298
            EMBL:AY062836 EMBL:AY064154 EMBL:AY081559 EMBL:AY097410
            EMBL:AK117680 EMBL:AK118417 IPI:IPI00530056 PIR:T45700
            RefSeq:NP_001190570.1 RefSeq:NP_190227.1 RefSeq:NP_680457.1
            UniGene:At.16932 UniGene:At.27064 IntAct:Q9SN96 STRING:Q9SN96
            PaxDb:Q9SN96 PRIDE:Q9SN96 EnsemblPlants:AT3G46430.1
            EnsemblPlants:AT5G59613.1 EnsemblPlants:AT5G59613.2 GeneID:823793
            GeneID:836081 KEGG:ath:AT3G46430 KEGG:ath:AT5G59613 TAIR:At3g46430
            TAIR:At5g59613 eggNOG:NOG262966 HOGENOM:HOG000029125
            InParanoid:Q9SN96 OMA:RREWRRN PhylomeDB:Q9SN96
            ProtClustDB:CLSN2684830 Genevestigator:Q9SN96 Uniprot:Q9SN96
        Length = 55

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query:     1 MRKFDPWPIFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKK 55
             MR FDPWP+FF+REW R WPFL GFA+TG +ITK + GLTEEDAKNS FVQ+H++
Sbjct:     1 MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55


>TAIR|locus:504954866 [details] [associations]
            symbol:AT5G59613 "AT5G59613" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005750 "mitochondrial
            respiratory chain complex III" evidence=IDA] [GO:0005753
            "mitochondrial proton-transporting ATP synthase complex"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005753 GO:GO:0005750 EMBL:AL133298
            EMBL:AY062836 EMBL:AY064154 EMBL:AY081559 EMBL:AY097410
            EMBL:AK117680 EMBL:AK118417 IPI:IPI00530056 PIR:T45700
            RefSeq:NP_001190570.1 RefSeq:NP_190227.1 RefSeq:NP_680457.1
            UniGene:At.16932 UniGene:At.27064 IntAct:Q9SN96 STRING:Q9SN96
            PaxDb:Q9SN96 PRIDE:Q9SN96 EnsemblPlants:AT3G46430.1
            EnsemblPlants:AT5G59613.1 EnsemblPlants:AT5G59613.2 GeneID:823793
            GeneID:836081 KEGG:ath:AT3G46430 KEGG:ath:AT5G59613 TAIR:At3g46430
            TAIR:At5g59613 eggNOG:NOG262966 HOGENOM:HOG000029125
            InParanoid:Q9SN96 OMA:RREWRRN PhylomeDB:Q9SN96
            ProtClustDB:CLSN2684830 Genevestigator:Q9SN96 Uniprot:Q9SN96
        Length = 55

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 39/55 (70%), Positives = 47/55 (85%)

Query:     1 MRKFDPWPIFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNSPFVQRHKK 55
             MR FDPWP+FF+REW R WPFL GFA+TG +ITK + GLTEEDAKNS FVQ+H++
Sbjct:     1 MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55


>DICTYBASE|DDB_G0275383 [details] [associations]
            symbol:DDB_G0275383 "transmembrane protein"
            species:44689 "Dictyostelium discoideum" [GO:0006928 "cellular
            component movement" evidence=IGI] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0275383
            GO:GO:0016021 GO:GO:0006928 EMBL:AAFI02000013 RefSeq:XP_643702.1
            PRIDE:Q553P4 EnsemblProtists:DDB0266977 GeneID:8619971
            KEGG:ddi:DDB_G0275383 OMA:IYWPFLV Uniprot:Q553P4
        Length = 68

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query:     3 KFDPWPIFFRREWNRNWPFLVGFAITGTIITKFSLGLTEEDAKNS 47
             K  P+  F  ++    WPFLVG      IITK  +G+TEE+  NS
Sbjct:     2 KVQPFSQFLAQQGKIYWPFLVGAGAWALIITKVHMGITEENKANS 46


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.142   0.490    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       55        55   0.00091  102 3  11 22  0.43    27
                                                     29  0.40    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  96 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.33u 0.13s 6.46t   Elapsed:  00:00:00
  Total cpu time:  6.33u 0.13s 6.46t   Elapsed:  00:00:00
  Start:  Thu May  9 16:13:03 2013   End:  Thu May  9 16:13:03 2013

Back to top