Query 035445
Match_columns 38
No_of_seqs 106 out of 157
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 04:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 95.7 0.0011 3.7E-08 42.5 -1.1 36 2-37 347-382 (408)
2 3zy2_A Putative GDP-fucose pro 93.1 0.016 5.4E-07 39.1 -0.2 34 2-35 315-348 (362)
3 4ayl_A BOGT-metal-independent 28.1 31 0.0011 22.0 1.9 18 4-21 88-105 (246)
4 3ioh_A Histo-blood group ABO s 27.4 31 0.0011 22.6 1.8 18 4-21 148-165 (298)
5 2de0_X Alpha-(1,6)-fucosyltran 27.2 13 0.00045 25.3 -0.0 28 4-31 390-417 (526)
6 2jsp_A Transcriptional regulat 22.0 24 0.00082 19.3 0.4 8 5-12 20-27 (87)
7 1o7q_A N-acetyllactosaminide a 20.4 53 0.0018 21.4 1.9 18 4-21 139-156 (289)
8 1q44_A RARO47, steroid sulfotr 16.1 70 0.0024 19.6 1.6 14 9-22 63-78 (326)
9 1dw9_A Cyanate lyase; cyanate 14.3 54 0.0018 19.5 0.7 11 1-11 121-131 (156)
10 2gt1_A Lipopolysaccharide hept 13.1 56 0.0019 19.1 0.6 16 10-25 252-267 (326)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=95.66 E-value=0.0011 Score=42.54 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=33.5
Q ss_pred cceeeeeeeccceeeecCCCCHHHHHhhhhhhcccc
Q 035445 2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLSVFQ 37 (38)
Q Consensus 2 AAlDy~V~~~SDvFv~t~~Gnm~~~v~GhR~y~g~~ 37 (38)
|.||-.||.+|++||.|....|...|.=.|-+.|+.
T Consensus 347 a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 347 AIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred hHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 568999999999999999999999999999999974
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=93.06 E-value=0.016 Score=39.13 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=31.7
Q ss_pred cceeeeeeeccceeeecCCCCHHHHHhhhhhhcc
Q 035445 2 AALDYMVSVESDVFIPSHLGNMARAVEGHLMLSV 35 (38)
Q Consensus 2 AAlDy~V~~~SDvFv~t~~Gnm~~~v~GhR~y~g 35 (38)
|.||.+||.+||+||.+....|...|.=.|--.|
T Consensus 315 a~ID~~I~~~A~~FIGN~~SSFSa~I~rERdi~G 348 (362)
T 3zy2_A 315 MYTSLAIMGRADLFVGNCVSTFSHIVKRERDHAG 348 (362)
T ss_dssp HHHHHHHHHHSSEEEECTTCHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHhCCEeecCccccccHHHHHHHHhcC
Confidence 6899999999999999999999999998888877
No 3
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=28.06 E-value=31 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=14.8
Q ss_pred eeeeeeeccceeeecCCC
Q 035445 4 LDYMVSVESDVFIPSHLG 21 (38)
Q Consensus 4 lDy~V~~~SDvFv~t~~G 21 (38)
.||++|..+|.-+-..-|
T Consensus 88 vDyLf~~dvd~~F~~~vG 105 (246)
T 4ayl_A 88 TDYLFFFNANLLFTSPIG 105 (246)
T ss_dssp CSEEEEECTTEEECSCBC
T ss_pred CCEEEEEeCCceeeccCC
Confidence 699999999987766655
No 4
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=27.38 E-value=31 Score=22.58 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=15.5
Q ss_pred eeeeeeeccceeeecCCC
Q 035445 4 LDYMVSVESDVFIPSHLG 21 (38)
Q Consensus 4 lDy~V~~~SDvFv~t~~G 21 (38)
.||++|..+|.-+-.+-|
T Consensus 148 vDyLfc~dvd~~F~~~vG 165 (298)
T 3ioh_A 148 VDYLVCVDVDMEFRDHVG 165 (298)
T ss_dssp CSEEEEEESSEEECSCBC
T ss_pred CCEEEEecCCCeeccCcc
Confidence 699999999998877766
No 5
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=27.21 E-value=13 Score=25.28 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.4
Q ss_pred eeeeeeeccceeeecCCCCHHHHHhhhh
Q 035445 4 LDYMVSVESDVFIPSHLGNMARAVEGHL 31 (38)
Q Consensus 4 lDy~V~~~SDvFv~t~~Gnm~~~v~GhR 31 (38)
+|.++-+++|+||.|.+.|+.++..-.|
T Consensus 390 ~DL~lLs~cd~~Vgt~sS~~srla~~l~ 417 (526)
T 2de0_X 390 LDIHFLSQADFLVCTFSSQVCRVAYEIM 417 (526)
T ss_dssp HHHHHHHHSSEEEECTTSHHHHHHHHHH
T ss_pred HHHHHHhcCCeeecCCCCHHHHHHHHHh
Confidence 5777788999999999988888765544
No 6
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=22.02 E-value=24 Score=19.35 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=5.9
Q ss_pred eeeeeecc
Q 035445 5 DYMVSVES 12 (38)
Q Consensus 5 Dy~V~~~S 12 (38)
|+|||++.
T Consensus 20 d~iiClec 27 (87)
T 2jsp_A 20 DHIVCLEC 27 (87)
T ss_dssp SCEECTBT
T ss_pred CceEeccc
Confidence 77888764
No 7
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=20.38 E-value=53 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.588 Sum_probs=15.0
Q ss_pred eeeeeeeccceeeecCCC
Q 035445 4 LDYMVSVESDVFIPSHLG 21 (38)
Q Consensus 4 lDy~V~~~SDvFv~t~~G 21 (38)
.||++|..+|.-+...-|
T Consensus 139 vDYLf~~dvd~~F~~~vG 156 (289)
T 1o7q_A 139 VDFLFCMDVDQVFQDKFG 156 (289)
T ss_dssp CSEEEEECSSEEECSCBC
T ss_pred CCEEEEeeCCcEeeccCC
Confidence 699999999987776665
No 8
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu genomics, protein structure initiative, center for eukaryot structural genomics; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Probab=16.06 E-value=70 Score=19.64 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.2
Q ss_pred eeccceeeecCC--CC
Q 035445 9 SVESDVFIPSHL--GN 22 (38)
Q Consensus 9 ~~~SDvFv~t~~--Gn 22 (38)
.-..||||.|++ |+
T Consensus 63 ~r~~Dv~i~syPKsGT 78 (326)
T 1q44_A 63 AKDSDIILVTNPKSGT 78 (326)
T ss_dssp CCTTCEEEECCTTSCC
T ss_pred cCCCCEEEEeCCCCcH
Confidence 456899999996 65
No 9
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=14.35 E-value=54 Score=19.46 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=8.6
Q ss_pred Ccceeeeeeec
Q 035445 1 MAALDYMVSVE 11 (38)
Q Consensus 1 lAAlDy~V~~~ 11 (38)
|+||||-.-++
T Consensus 121 MSAIdF~~~v~ 131 (156)
T 1dw9_A 121 ISAINFKLDVK 131 (156)
T ss_dssp EEEEEEEEEEE
T ss_pred EeeeeeeeeeE
Confidence 68999987665
No 10
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=13.07 E-value=56 Score=19.11 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=13.2
Q ss_pred eccceeeecCCCCHHH
Q 035445 10 VESDVFIPSHLGNMAR 25 (38)
Q Consensus 10 ~~SDvFv~t~~Gnm~~ 25 (38)
.++|++|.+.+|.|+=
T Consensus 252 ~~a~l~I~~DSG~~Hl 267 (326)
T 2gt1_A 252 AGAKFVVSVDTGLSHL 267 (326)
T ss_dssp HTCSEEEEESSHHHHH
T ss_pred HhCCEEEecCCcHHHH
Confidence 4789999999998753
Done!