BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035449
MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI

High Scoring Gene Products

Symbol, full name Information P value
TOM5
AT5G08040 		protein from Arabidopsis thaliana 1.8e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035449
        (54 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2142838 - symbol:TOM5 "AT5G08040" species:3702...   204  1.8e-16   1


>TAIR|locus:2142838 [details] [associations]
            symbol:TOM5 "AT5G08040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0009536 "plastid" evidence=IDA] GO:GO:0016021
            GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009536
            GO:GO:0005741 GO:GO:0015031 EMBL:AL133421 EMBL:BT011252
            IPI:IPI00548112 PIR:T45629 RefSeq:NP_196421.1 UniGene:At.637
            STRING:Q9SD80 PaxDb:Q9SD80 PRIDE:Q9SD80 DNASU:830698
            EnsemblPlants:AT5G08040.1 GeneID:830698 KEGG:ath:AT5G08040
            GeneFarm:2955 TAIR:At5g08040 eggNOG:NOG279540 HOGENOM:HOG000244142
            InParanoid:Q9SD80 OMA:NMKLLRA PhylomeDB:Q9SD80
            ProtClustDB:CLSN2687255 Genevestigator:Q9SD80 GermOnline:AT5G08040
            Uniprot:Q9SD80
        Length = 54

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 36/54 (66%), Positives = 46/54 (85%)

Query:     1 MADSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54
             M ++VVS+EK+KA WHS+VHDE+KWA+N KLLRA G+FA  + LMRSYGDLM +
Sbjct:     1 MVNNVVSIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.132   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       54        54   0.00091  102 3  11 22  0.38    27
                                                     29  0.38    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  89 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.70u 0.23s 5.93t   Elapsed:  00:00:01
  Total cpu time:  5.70u 0.23s 5.93t   Elapsed:  00:00:01
  Start:  Thu May  9 16:21:14 2013   End:  Thu May  9 16:21:15 2013

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