Query 035449
Match_columns 54
No_of_seqs 26 out of 28
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15184 TOMM6: Mitochondrial 89.0 0.5 1.1E-05 28.6 2.7 40 9-50 14-56 (66)
2 PF14654 Epiglycanin_C: Mucin, 64.9 7.9 0.00017 25.3 2.6 20 29-48 26-45 (106)
3 PF13124 DUF3963: Protein of u 60.8 19 0.00042 19.9 3.4 26 12-37 6-31 (40)
4 PF12713 DUF3806: Domain of un 54.3 34 0.00074 20.3 4.0 35 7-45 2-36 (87)
5 PF12430 ABA_GPCR: Abscisic ac 51.3 30 0.00065 23.3 3.7 35 8-43 66-100 (196)
6 TIGR02833 spore_III_AB stage I 45.0 54 0.0012 21.6 4.2 24 22-45 144-167 (170)
7 PF06783 UPF0239: Uncharacteri 44.8 14 0.0003 23.2 1.2 15 32-46 21-35 (85)
8 TIGR03063 srtB_target sortase 44.5 19 0.00042 18.5 1.6 12 37-48 16-28 (29)
9 TIGR00945 tatC Twin arginine t 41.7 63 0.0014 21.8 4.2 37 9-45 78-114 (215)
10 COG3308 Predicted membrane pro 40.9 74 0.0016 21.5 4.3 32 20-51 91-123 (131)
11 TIGR01912 TatC-Arch Twin argin 38.1 81 0.0018 21.8 4.4 36 9-44 86-121 (237)
12 PRK08307 stage III sporulation 36.3 41 0.0009 22.1 2.6 24 22-45 145-168 (171)
13 PF09548 Spore_III_AB: Stage I 36.1 88 0.0019 20.3 4.1 33 13-45 134-167 (170)
14 PF08671 SinI: Anti-repressor 34.0 37 0.00079 17.4 1.6 15 4-18 15-29 (30)
15 PF05514 HR_lesion: HR-like le 32.5 97 0.0021 20.7 3.9 36 10-45 101-136 (138)
16 PF05978 UNC-93: Ion channel r 30.6 1E+02 0.0023 20.0 3.8 29 18-46 116-147 (156)
17 PF11842 DUF3362: Domain of un 27.9 54 0.0012 22.2 2.1 19 18-36 52-70 (150)
18 COG1470 Predicted membrane pro 26.8 68 0.0015 25.8 2.7 20 31-50 493-512 (513)
19 PF13055 DUF3917: Protein of u 26.2 35 0.00076 20.8 0.9 22 25-47 38-59 (71)
20 PF01558 POR: Pyruvate ferredo 25.5 1.1E+02 0.0024 19.1 3.1 30 6-35 141-171 (173)
21 PRK06274 indolepyruvate oxidor 25.5 1.3E+02 0.0028 19.3 3.5 29 6-35 160-188 (197)
22 PRK10921 twin-arginine protein 25.3 1.8E+02 0.004 20.4 4.5 37 9-45 89-125 (258)
23 CHL00182 tatC Sec-independent 25.0 1.9E+02 0.004 20.3 4.4 37 9-45 99-135 (249)
24 COG3789 Uncharacterized protei 24.8 9.6 0.00021 26.1 -1.9 10 42-51 40-49 (146)
25 PF07281 INSIG: Insulin-induce 24.4 88 0.0019 21.5 2.7 20 29-48 82-101 (193)
26 PF11380 DUF3184: Protein of u 24.1 32 0.00069 28.5 0.5 43 6-54 438-480 (691)
27 KOG3098 Uncharacterized conser 23.9 90 0.002 24.1 2.9 29 17-45 128-159 (461)
28 PF12133 Sars6: Open reading f 23.5 48 0.001 19.8 1.1 11 41-51 15-25 (62)
29 PF11188 DUF2975: Protein of u 23.5 1.7E+02 0.0036 17.1 3.9 34 10-47 46-79 (136)
30 PF05233 PHB_acc: PHB accumula 23.2 37 0.00081 18.1 0.5 9 44-52 9-17 (41)
31 PF05798 Phage_FRD3: Bacteriop 23.0 68 0.0015 19.8 1.7 15 7-21 45-59 (75)
32 cd01055 Nonheme_Ferritin nonhe 22.9 1.4E+02 0.003 18.2 3.1 39 7-45 114-152 (156)
33 PF02338 OTU: OTU-like cystein 22.8 72 0.0016 18.5 1.8 29 10-38 44-73 (121)
34 PF01219 DAGK_prokar: Prokaryo 22.7 1.2E+02 0.0027 18.7 2.9 36 7-45 61-96 (104)
35 PF07455 Psu: Phage polarity s 22.3 38 0.00082 23.9 0.6 30 7-38 123-157 (188)
36 PF02438 Adeno_100: Late 100kD 21.9 2.6E+02 0.0056 23.0 5.1 45 3-48 196-240 (583)
37 PRK10617 cytochrome c-type pro 21.8 2.8E+02 0.0061 19.2 4.8 32 10-44 10-41 (200)
38 COG0818 DgkA Diacylglycerol ki 21.7 2.5E+02 0.0053 18.4 4.3 39 7-48 75-113 (123)
39 cd00904 Ferritin Ferritin iron 21.6 1E+02 0.0022 19.6 2.4 30 6-35 116-146 (160)
40 PF04365 DUF497: Protein of un 21.4 66 0.0014 18.6 1.4 11 20-30 1-11 (80)
41 PRK08338 2-oxoglutarate ferred 21.0 1.5E+02 0.0032 19.0 3.1 29 6-35 136-164 (170)
42 PF14159 CAAD: CAAD domains of 20.8 1.8E+02 0.0039 17.6 3.3 32 10-47 3-34 (90)
43 PLN03155 cytochrome c oxidase 20.4 87 0.0019 18.8 1.8 18 33-50 24-41 (63)
44 PRK14029 pyruvate/ketoisovaler 20.1 2.1E+02 0.0045 18.6 3.7 29 6-35 148-176 (185)
45 PF00902 TatC: Sec-independent 20.0 2.6E+02 0.0056 18.6 4.2 36 9-44 82-117 (215)
No 1
>PF15184 TOMM6: Mitochondrial import receptor subunit TOM6 homolog
Probab=89.02 E-value=0.5 Score=28.63 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035449 9 EKVKAFWHSQVH---DEEKWALNAKLLRAGGLFAASIFLMRSYGD 50 (54)
Q Consensus 9 ~~~k~f~~sqi~---deek~a~N~~llra~glFagsI~~mRnfGd 50 (54)
..+-+|++.-+. |...+.-| |+--+|||++++-+.||--|
T Consensus 14 ~~v~dwlrg~~~fatdrndfrrn--lilnlglfaagvwlarnlsd 56 (66)
T PF15184_consen 14 AGVGDWLRGVYRFATDRNDFRRN--LILNLGLFAAGVWLARNLSD 56 (66)
T ss_pred ccHHHHHHhhhhccccchhHHHH--HHHHhhHHhhhHHhhccccc
Confidence 456666666553 44555555 56689999999999999875
No 2
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=64.94 E-value=7.9 Score=25.32 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 035449 29 AKLLRAGGLFAASIFLMRSY 48 (54)
Q Consensus 29 ~~llra~glFagsI~~mRnf 48 (54)
.+.+-++|||+|=-|-+|||
T Consensus 26 asVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 26 ASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 35678899999999999996
No 3
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=60.76 E-value=19 Score=19.92 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.2
Q ss_pred HHHHHhhhccHHHHHHHHHHHHHHHH
Q 035449 12 KAFWHSQVHDEEKWALNAKLLRAGGL 37 (54)
Q Consensus 12 k~f~~sqi~deek~a~N~~llra~gl 37 (54)
.+||..-+.|-+||--|+...-|+-+
T Consensus 6 ~~fieryfddiqkwirnit~cfal~v 31 (40)
T PF13124_consen 6 TAFIERYFDDIQKWIRNITFCFALLV 31 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788999999998766543
No 4
>PF12713 DUF3806: Domain of unknown function (DUF3806); InterPro: IPR024266 This entry represents a domain found at the C terminus of a family of bacterial proteins, whose function is unknown. In two related Bacteroides species the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1ma7, whose C-terminal domain is a phage integrase.; PDB: 3HLZ_A.
Probab=54.25 E-value=34 Score=20.32 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
-++++++.++++..++++.. -+.+.|+--|-++.=
T Consensus 2 Dl~~lq~~id~~~~~~~d~~----~~~alGialG~~L~~ 36 (87)
T PF12713_consen 2 DLEKLQRVIDSGEISPDDKD----EWQALGIALGDLLAN 36 (87)
T ss_dssp GHHHHHHHHHTT-S-TT-HH----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCCCCCcHH----HHHHHHHHHHHHHHh
Confidence 36899999999999998766 288889888777653
No 5
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=51.25 E-value=30 Score=23.28 Aligned_cols=35 Identities=29% Similarity=0.545 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Q 035449 8 LEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIF 43 (54)
Q Consensus 8 ~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~ 43 (54)
++++-.+++-++ |++.|.--++++-.+.+|.+|+=
T Consensus 66 l~~~~~~~~~~~-d~~~~s~~ISf~L~g~l~~~S~r 100 (196)
T PF12430_consen 66 LAILLSFFNIPI-DVDSWSRQISFLLSGVLFVTSIR 100 (196)
T ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHhHH
Confidence 477777888888 99999999999999999999973
No 6
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=45.02 E-value=54 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 22 EEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 22 eek~a~N~~llra~glFagsI~~m 45 (54)
++....|.|+-|++|+++|..++.
T Consensus 144 ~~~~~k~~Kmy~~LGvl~Gl~lvI 167 (170)
T TIGR02833 144 EDEQKKNEKMYRYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH
Confidence 467788999999999999987653
No 7
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=44.80 E-value=14 Score=23.23 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 035449 32 LRAGGLFAASIFLMR 46 (54)
Q Consensus 32 lra~glFagsI~~mR 46 (54)
|--=|||.|+||=+-
T Consensus 21 llRYGLf~GAIFQli 35 (85)
T PF06783_consen 21 LLRYGLFVGAIFQLI 35 (85)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444699999999553
No 8
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=44.50 E-value=19 Score=18.49 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=7.5
Q ss_pred HHHHH-HHHHHHh
Q 035449 37 LFAAS-IFLMRSY 48 (54)
Q Consensus 37 lFags-I~~mRnf 48 (54)
+|.+| +|++|++
T Consensus 16 l~~~s~~~Li~k~ 28 (29)
T TIGR03063 16 LFLGSGLFLIRKR 28 (29)
T ss_pred HHHHHHHHHhhcc
Confidence 44444 7888864
No 9
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=41.73 E-value=63 Score=21.79 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 9 EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 9 ~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
=.+-+|+..-.+..||+..+.-+.-+..+|.+|+.+-
T Consensus 78 yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f~ 114 (215)
T TIGR00945 78 YQIWAFILPGLYEHERRLLLPLLLGSILLFLAGLAFA 114 (215)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888999999999999999999999988764
No 10
>COG3308 Predicted membrane protein [Function unknown]
Probab=40.92 E-value=74 Score=21.50 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=27.8
Q ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 035449 20 HDE-EKWALNAKLLRAGGLFAASIFLMRSYGDL 51 (54)
Q Consensus 20 ~de-ek~a~N~~llra~glFagsI~~mRnfGdl 51 (54)
-|| |.|=+=.+++-+...|-+.++..|.+++.
T Consensus 91 dd~aer~lawaevllS~~~F~a~lly~R~r~~~ 123 (131)
T COG3308 91 DDPAERILAWAEVLLSIIFFIACLLYVRQRKET 123 (131)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 77888899999999999999999999873
No 11
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=38.13 E-value=81 Score=21.85 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 9 EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFL 44 (54)
Q Consensus 9 ~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~ 44 (54)
=.+-+|+..-++..||+..+.-+.-+..+|.+++.+
T Consensus 86 yqiw~Fi~PgLy~~Er~~~~~~~~~~~~lF~~G~~f 121 (237)
T TIGR01912 86 YEAYRFIKPALKPHERRQVRLLGVIAVGLFAFGALF 121 (237)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999988654
No 12
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=36.29 E-value=41 Score=22.13 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 22 EEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 22 eek~a~N~~llra~glFagsI~~m 45 (54)
++....|.|+-|++|+++|..++.
T Consensus 145 ~~~~~k~~Kmy~~LGvl~Gl~lvI 168 (171)
T PRK08307 145 EEEQKKNEKMYKYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHH
Confidence 467788999999999999987653
No 13
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=36.06 E-value=88 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=23.3
Q ss_pred HHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHHH
Q 035449 13 AFWHSQVHDE-EKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 13 ~f~~sqi~de-ek~a~N~~llra~glFagsI~~m 45 (54)
.-++.|+-.. +..+.|.|+-|++|+.+|..++.
T Consensus 134 ~~L~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvI 167 (170)
T PF09548_consen 134 EQLEQQLEEAREEAKKKGKLYRSLGVLGGLFLVI 167 (170)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3344444333 66788999999999999987653
No 14
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=33.98 E-value=37 Score=17.37 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHhh
Q 035449 4 SVVSLEKVKAFWHSQ 18 (54)
Q Consensus 4 ~~~~~~~~k~f~~sq 18 (54)
..+++|.++.|+.++
T Consensus 15 ~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 15 SGLSKEEIREFLEFN 29 (30)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 467889999998764
No 15
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=32.46 E-value=97 Score=20.74 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 10 KVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 10 ~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
-+-+|||.+..++|--..=.+.++.++||.+=.|++
T Consensus 101 i~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFl 136 (138)
T PF05514_consen 101 ILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFL 136 (138)
T ss_pred HhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999877776556667888889888766653
No 16
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=30.63 E-value=1e+02 Score=19.98 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.5
Q ss_pred hhccHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 035449 18 QVHDEEKWALNAKLLRAG---GLFAASIFLMR 46 (54)
Q Consensus 18 qi~deek~a~N~~llra~---glFagsI~~mR 46 (54)
|..+|+.++.|..+.++. +++.|+++.+=
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999988776 77888877653
No 17
>PF11842 DUF3362: Domain of unknown function (DUF3362); InterPro: IPR024560 This domain tends to occur to the C terminus of a radical SAM domain (PF04055 from PFAM) in members of the uncharacterised protein family UPF0313. Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=27.92 E-value=54 Score=22.21 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=14.1
Q ss_pred hhccHHHHHHHHHHHHHHH
Q 035449 18 QVHDEEKWALNAKLLRAGG 36 (54)
Q Consensus 18 qi~deek~a~N~~llra~g 36 (54)
||+|||+|+.=.+-|+-+|
T Consensus 52 ~Y~~PeN~~lvreAL~~~G 70 (150)
T PF11842_consen 52 RYHDPENWPLVREALKKMG 70 (150)
T ss_pred hhcChhhHHHHHHHHHHhh
Confidence 7999998887666665554
No 18
>COG1470 Predicted membrane protein [Function unknown]
Probab=26.76 E-value=68 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 035449 31 LLRAGGLFAASIFLMRSYGD 50 (54)
Q Consensus 31 llra~glFagsI~~mRnfGd 50 (54)
++--+..|+|=||+||.||-
T Consensus 493 I~Ii~~~v~~L~fviRK~GR 512 (513)
T COG1470 493 IAIIVLVVLGLIFVIRKFGR 512 (513)
T ss_pred HHHHHHHHHHHHhhhHHhcC
Confidence 44456788999999999993
No 19
>PF13055 DUF3917: Protein of unknown function (DUF3917)
Probab=26.21 E-value=35 Score=20.80 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 035449 25 WALNAKLLRAGGLFAASIFLMRS 47 (54)
Q Consensus 25 ~a~N~~llra~glFagsI~~mRn 47 (54)
|..|+- .-+..||+|||.+.--
T Consensus 38 ~s~~~~-fi~itlfags~mvlmv 59 (71)
T PF13055_consen 38 WSTSLV-FIGITLFAGSIMVLMV 59 (71)
T ss_pred eeeeee-eeehHHHhchHHHHHH
Confidence 444443 3478899999987543
No 20
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=25.52 E-value=1.1e+02 Score=19.14 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhhhccH-HHHHHHHHHHHHH
Q 035449 6 VSLEKVKAFWHSQVHDE-EKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~de-ek~a~N~~llra~ 35 (54)
.+.|.+++.++.++-.. +-.+.|++.++..
T Consensus 141 l~~e~~~~~i~~~f~~k~~~~e~N~~a~~~G 171 (173)
T PF01558_consen 141 LPLESLEEAIKERFPKKGKVVEANLKAFRAG 171 (173)
T ss_dssp S-HHHHHHHHHHHSHGCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 56789999999888764 6699999988763
No 21
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=25.51 E-value=1.3e+02 Score=19.32 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~ 35 (54)
.+.|.+.+.+++++ .|+..+.|++.++..
T Consensus 160 i~~e~~~~ai~~~~-~~~~ve~N~~A~~~g 188 (197)
T PRK06274 160 LSKESVLETIEAEL-PEKLREINLAAFELG 188 (197)
T ss_pred CCHHHHHHHHHHHc-CchhHHHHHHHHHHH
Confidence 46789999999988 666778899988754
No 22
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=25.34 E-value=1.8e+02 Score=20.41 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 9 EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 9 ~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
=.+=+|+.--++..||+...--+.-+..+|..|+.+-
T Consensus 89 yqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~ 125 (258)
T PRK10921 89 YQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFA 125 (258)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888899999999999999999999887653
No 23
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=25.03 E-value=1.9e+02 Score=20.32 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 9 EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 9 ~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
=++=+|+.--++..||+..+.-+.-+..+|.+|+.+-
T Consensus 99 yqiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~ 135 (249)
T CHL00182 99 YQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFA 135 (249)
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888899999999988889999999887653
No 24
>COG3789 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.82 E-value=9.6 Score=26.08 Aligned_cols=10 Identities=60% Similarity=0.996 Sum_probs=8.7
Q ss_pred HHHHHHhhhc
Q 035449 42 IFLMRSYGDL 51 (54)
Q Consensus 42 I~~mRnfGdl 51 (54)
|+.||.||||
T Consensus 40 ~v~M~eyGDL 49 (146)
T COG3789 40 IVKMNEYGDL 49 (146)
T ss_pred EEEehhcCCc
Confidence 6789999997
No 25
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=24.41 E-value=88 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 035449 29 AKLLRAGGLFAASIFLMRSY 48 (54)
Q Consensus 29 ~~llra~glFagsI~~mRnf 48 (54)
..++|+.++|.|-.+.+|+-
T Consensus 82 ~~v~R~i~~FvGi~~airkl 101 (193)
T PF07281_consen 82 SSVLRSIGAFVGISFAIRKL 101 (193)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 46799999999999999973
No 26
>PF11380 DUF3184: Protein of unknown function (DUF3184); InterPro: IPR021520 This eukaryotic family of proteins has no known function. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=24.09 E-value=32 Score=28.54 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSYGDLMAI 54 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRnfGdlmai 54 (54)
-+.+.|+.|++.-+--|=-.+ ...+==+.=--+=|+|||||+.
T Consensus 438 eaa~qLR~FL~~~FPtPv~LE------~~~~g~a~~~~l~r~F~~LM~L 480 (691)
T PF11380_consen 438 EAADQLRNFLHGLFPTPVYLE------ESAAGAAEEGALSRLFGDLMAL 480 (691)
T ss_pred HHHHHHHHHHHhhCCCCeEee------ccCcccchhHHHHHHHhhhhhc
Confidence 345778888876654441111 1110001112467999999974
No 27
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.90 E-value=90 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=23.4
Q ss_pred hhhccHHHHHHHHHHHHHH---HHHHHHHHHH
Q 035449 17 SQVHDEEKWALNAKLLRAG---GLFAASIFLM 45 (54)
Q Consensus 17 sqi~deek~a~N~~llra~---glFagsI~~m 45 (54)
+|...+|+.+.|..+.++. ++|.|||++.
T Consensus 128 t~~st~~tie~Nisi~Wai~~~~li~Ggi~l~ 159 (461)
T KOG3098|consen 128 TSNSTRETIERNISIFWAIGQSSLIIGGIILF 159 (461)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence 4567789999999999997 4778888763
No 28
>PF12133 Sars6: Open reading frame 6 from SARS coronavirus; InterPro: IPR022736 This entry represents small proteins, typically between 42 to 63 amino acids in length, which are uncharacterised.
Probab=23.53 E-value=48 Score=19.80 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=8.5
Q ss_pred HHHHHHHhhhc
Q 035449 41 SIFLMRSYGDL 51 (54)
Q Consensus 41 sI~~mRnfGdl 51 (54)
-|..||+||=+
T Consensus 15 li~im~sf~~a 25 (62)
T PF12133_consen 15 LIIIMRSFRIA 25 (62)
T ss_pred HHHHHHHHHHH
Confidence 37889999854
No 29
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=23.49 E-value=1.7e+02 Score=17.14 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=23.4
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 10 KVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRS 47 (54)
Q Consensus 10 ~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRn 47 (54)
=++++-+.++++++ |.+.+|-.|.......+...
T Consensus 46 ll~~i~~~~~Fs~~----n~~~l~~ig~~~l~~~~~~~ 79 (136)
T PF11188_consen 46 LLRNIQKGKPFSPE----NIRRLRRIGWLLLIISILSF 79 (136)
T ss_pred HHHHHHCCCcchHH----HHHHHHHHHHHHHHHHHHHH
Confidence 35666777777774 88888888876665555433
No 30
>PF05233 PHB_acc: PHB accumulation regulatory domain; InterPro: IPR007897 The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, for example the production of poly-beta-hydroxybutyrate (PHB) which is formed via the polymerisation of D(-)-3-hydroxybutyryl-CoA []. The function of this domain is unknown.
Probab=23.23 E-value=37 Score=18.15 Aligned_cols=9 Identities=56% Similarity=0.899 Sum_probs=5.0
Q ss_pred HHHHhhhcc
Q 035449 44 LMRSYGDLM 52 (54)
Q Consensus 44 ~mRnfGdlm 52 (54)
++|-|||.|
T Consensus 9 lIrfyg~~m 17 (41)
T PF05233_consen 9 LIRFYGPSM 17 (41)
T ss_pred HHHHcchhH
Confidence 456666654
No 31
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=23.01 E-value=68 Score=19.82 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhhhcc
Q 035449 7 SLEKVKAFWHSQVHD 21 (54)
Q Consensus 7 ~~~~~k~f~~sqi~d 21 (54)
|+|.+++|+..|+-|
T Consensus 45 Ple~l~~FM~nEYCd 59 (75)
T PF05798_consen 45 PLEDLTRFMANEYCD 59 (75)
T ss_pred cHHHHHHHHHHHhcc
Confidence 789999999999965
No 32
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=22.94 E-value=1.4e+02 Score=18.25 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
..+.+..|+..|+-..+....-+..++..|--..+++++
T Consensus 114 ~~~~l~~~l~~q~e~~~~~~~~l~~l~~~g~~~~~~~~~ 152 (156)
T cd01055 114 TFNFLQWFVKEQVEEEALARDILDKLKLAGDDGGGLYML 152 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHh
Confidence 346677888888888888888888888776544455443
No 33
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=22.82 E-value=72 Score=18.48 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=18.0
Q ss_pred HHHHHHHhh-hccHHHHHHHHHHHHHHHHH
Q 035449 10 KVKAFWHSQ-VHDEEKWALNAKLLRAGGLF 38 (54)
Q Consensus 10 ~~k~f~~sq-i~deek~a~N~~llra~glF 38 (54)
+++.|+... +.++..|+.++.|.-.+-+|
T Consensus 44 ~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~ 73 (121)
T PF02338_consen 44 KFEEFLEGDKMSKPGTWGGEIELQALANVL 73 (121)
T ss_dssp HHHHHHHHHHHTSTTSHEEHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccCcHHHHHHHHHHh
Confidence 445555555 66667899988874444433
No 34
>PF01219 DAGK_prokar: Prokaryotic diacylglycerol kinase; InterPro: IPR000829 Diacylglycerol kinase (2.7.1.107 from EC) (DAGK) is an enzyme that catalyses the formation of phosphatidic acid from diacylglycerol and ATP, an important step in phospholipid biosynthesis. In bacteria DAGK is very small (13 to 15 kD) membrane protein which seems to contain three transmembrane domains []. The best conserved region, is a stretch of 12 residues which are located in a cytoplasmic loop between the second and third transmembrane domains.; GO: 0004143 diacylglycerol kinase activity, 0008654 phospholipid biosynthetic process, 0016020 membrane; PDB: 2KDC_B.
Probab=22.70 E-value=1.2e+02 Score=18.69 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLM 45 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~m 45 (54)
++|++-++...|+|..-| +.|=+-|++++.++++..
T Consensus 61 AIE~~vD~v~~~~~~~ak---~aKD~aAaAVlv~~i~a~ 96 (104)
T PF01219_consen 61 AIERLVDLVSPEYHPLAK---RAKDIAAAAVLVAAIFAV 96 (104)
T ss_dssp HHHHHHTT----S-TTSH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHcchhhcHHHH---HHHHHHHHHHHHHHHHHH
Confidence 579999999988877554 455566777777766543
No 35
>PF07455 Psu: Phage polarity suppression protein (Psu); InterPro: IPR010006 This entry is represented by Bacteriophage P4, Psu, the polarity suppression protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of Bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity [].
Probab=22.35 E-value=38 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHH-----HHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAK-----LLRAGGLF 38 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~-----llra~glF 38 (54)
|.+.|+.|+..++..++ +-|++ +|+++|++
T Consensus 123 a~~~LReaL~~~lt~~~--~inya~~d~DIL~~iG~r 157 (188)
T PF07455_consen 123 ADTYLREALSRWLTAGA--EINYAAQDRDILTAIGFR 157 (188)
T ss_pred HHHHHHHHHHHHHccCC--cCCcccchhhHHHhccCC
Confidence 55899999999999887 34554 89999986
No 36
>PF02438 Adeno_100: Late 100kD protein; InterPro: IPR003381 The late 100 kDa protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus.; GO: 0019060 intracellular transport of viral proteins in host cell
Probab=21.88 E-value=2.6e+02 Score=23.02 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=34.7
Q ss_pred chhhhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035449 3 DSVVSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSY 48 (54)
Q Consensus 3 ~~~~~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRnf 48 (54)
.+|++-|.+.+|...+- ||+..+.==+.+.++.+++.-.-.|+.|
T Consensus 196 ~pvvsDe~L~~wl~~~~-d~~~l~~~Rk~~~~av~~t~~Le~m~rf 240 (583)
T PF02438_consen 196 EPVVSDEELARWLDPTN-DPEALEERRKNVMAAVLVTAQLECMQRF 240 (583)
T ss_pred CcccCHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999998443 7776666677788888888887777765
No 37
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=21.83 E-value=2.8e+02 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=14.9
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 10 KVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFL 44 (54)
Q Consensus 10 ~~k~f~~sqi~deek~a~N~~llra~glFagsI~~ 44 (54)
-++++|+- +.-|-++ .+-+|-.+|+++|-+++
T Consensus 10 ~~~~~~~~-~~k~~~~--~l~~lll~g~~~G~~~~ 41 (200)
T PRK10617 10 LIKRLWKW-WRTPSRL--ALGTLLLIGFVGGIIFW 41 (200)
T ss_pred HHHHHHHH-HHhhHHH--HHHHHHHHHHHHHHHHH
Confidence 35555554 3334444 33344445555555444
No 38
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=21.75 E-value=2.5e+02 Score=18.45 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSY 48 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRnf 48 (54)
+||...+.+-.|+|.-.|++ |=.-|+++|-.+++..-.+
T Consensus 75 AIEa~VD~~s~e~helak~A---KD~as~AVli~~l~a~~v~ 113 (123)
T COG0818 75 AIEAVVDLISPEYHELAKRA---KDMGSAAVLIASLFAVIVW 113 (123)
T ss_pred HHHHHHHHcccchhHHHHHH---HHHHhHHHHHHHHHHHHHH
Confidence 57999999999999877655 4556777777777665443
No 39
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=21.64 E-value=1e+02 Score=19.62 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=22.8
Q ss_pred hhHHHHHH-HHHhhhccHHHHHHHHHHHHHH
Q 035449 6 VSLEKVKA-FWHSQVHDEEKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~-f~~sqi~deek~a~N~~llra~ 35 (54)
...+.++. |+.+|+-.+.+...-++-++.+
T Consensus 116 ~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~~~ 146 (160)
T cd00904 116 HLCDFLESHFLDEQVKEIKQVGDILTNLERL 146 (160)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHhh
Confidence 34577888 9999998888777777777655
No 40
>PF04365 DUF497: Protein of unknown function (DUF497); InterPro: IPR007460 This entry is represented by Burkholderia phage Bups phi1, Orf7.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3U97_A.
Probab=21.38 E-value=66 Score=18.62 Aligned_cols=11 Identities=36% Similarity=0.326 Sum_probs=7.5
Q ss_pred ccHHHHHHHHH
Q 035449 20 HDEEKWALNAK 30 (54)
Q Consensus 20 ~deek~a~N~~ 30 (54)
+||+|.+.|++
T Consensus 1 WD~~K~~~N~~ 11 (80)
T PF04365_consen 1 WDEAKNEKNIR 11 (80)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 58888888875
No 41
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=20.96 E-value=1.5e+02 Score=19.00 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~ 35 (54)
++.|.+++-+++++- +.+.+.|++.++..
T Consensus 136 ~~~e~~~~~i~~~~~-~k~~~~N~~A~~~G 164 (170)
T PRK08338 136 VKKESVEEAIRRRVP-KGTEEINIKAFRKG 164 (170)
T ss_pred CCHHHHHHHHHHHcC-cccHHHHHHHHHHH
Confidence 578999999998883 33556899888753
No 42
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=20.80 E-value=1.8e+02 Score=17.62 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 10 KVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRS 47 (54)
Q Consensus 10 ~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRn 47 (54)
++++.|.+. |..+-..++++|+..+.++..|=
T Consensus 3 ~~~~~~~~~------~~~~~~~~~~~~~ii~~iv~l~v 34 (90)
T PF14159_consen 3 KLPEYWGEF------FDKYKRPLLTIGAIIAVIVALWV 34 (90)
T ss_pred hHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555443 34445667788877777776653
No 43
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=20.40 E-value=87 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 035449 33 RAGGLFAASIFLMRSYGD 50 (54)
Q Consensus 33 ra~glFagsI~~mRnfGd 50 (54)
-++||+||+..=|..|.+
T Consensus 24 ~~LGL~AG~~WKmhHWn~ 41 (63)
T PLN03155 24 LTLGLAAGGLWKMHHWNE 41 (63)
T ss_pred hHHHHhhhhHHHHhhhhh
Confidence 478999999998877754
No 44
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=20.12 E-value=2.1e+02 Score=18.60 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~ 35 (54)
++.|.+.+-+++++- ++..+.|++-++..
T Consensus 148 ~~~e~~~~~i~~~~~-~~~~e~N~~A~~~G 176 (185)
T PRK14029 148 VKIESVEEAIKDTFS-GELGEKNAKAAREA 176 (185)
T ss_pred CCHHHHHHHHHHHhh-HhHHHHHHHHHHHH
Confidence 478999999998875 67888999888754
No 45
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=20.00 E-value=2.6e+02 Score=18.56 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 9 EKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFL 44 (54)
Q Consensus 9 ~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~ 44 (54)
=.+-+|++.-++..|++....-++-+..+|.+|+.+
T Consensus 82 yq~w~Fi~PgL~~~Er~~~~~~~~~~~~lf~~g~~f 117 (215)
T PF00902_consen 82 YQIWAFIAPGLYKHERRFFKKFVLISFILFLLGVAF 117 (215)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888889999888899999999998875
Done!