Query 035449
Match_columns 54
No_of_seqs 26 out of 28
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 04:20:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kpe_A Fusion glycoprotein F0; 51.1 9.6 0.00033 21.0 2.0 17 5-21 31-47 (51)
2 1svf_A Protein (fusion glycopr 47.4 11 0.00038 21.4 1.9 18 4-21 40-57 (64)
3 2fyz_A Fusion protein, fusion 46.6 12 0.0004 21.3 1.9 17 4-20 43-59 (63)
4 2jm6_A NOXA; apoptosis, BCL-2, 36.1 10 0.00035 18.8 0.5 9 44-52 10-18 (27)
5 3mqp_B Phorbol-12-myristate-13 33.0 12 0.00043 18.2 0.5 10 43-52 9-18 (25)
6 1vsy_5 Proteasome activator BL 28.0 37 0.0013 26.9 2.6 38 9-52 466-505 (997)
7 2lke_A Integrin alpha-M; myris 22.1 25 0.00084 16.7 0.4 10 43-52 4-13 (26)
8 2luv_A Integrin alpha-X; myris 25.7 22 0.00074 18.0 0.0 10 43-52 4-13 (35)
9 3g2e_A OORC subunit of 2-oxogl 19.2 1.3E+02 0.0043 18.9 3.5 29 6-35 148-176 (194)
10 3u97_A Ribonuclease toxin BRNT 18.4 56 0.0019 20.1 1.6 12 19-30 37-48 (114)
No 1
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=51.11 E-value=9.6 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHhhhcc
Q 035449 5 VVSLEKVKAFWHSQVHD 21 (54)
Q Consensus 5 ~~~~~~~k~f~~sqi~d 21 (54)
..+++++|+|++.++.-
T Consensus 31 a~Av~~iQ~~IN~~i~p 47 (51)
T 3kpe_A 31 TSKVLDLKNYIDKQLLP 47 (51)
T ss_dssp HHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45779999999999863
No 2
>1svf_A Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=47.40 E-value=11 Score=21.44 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHHhhhcc
Q 035449 4 SVVSLEKVKAFWHSQVHD 21 (54)
Q Consensus 4 ~~~~~~~~k~f~~sqi~d 21 (54)
.++++.++++|++.++..
T Consensus 40 lavAv~~lQd~IN~~i~P 57 (64)
T 1svf_A 40 LGTAVQAVQDHINSVVSP 57 (64)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357789999999999863
No 3
>2fyz_A Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=46.61 E-value=12 Score=21.30 Aligned_cols=17 Identities=0% Similarity=0.223 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHhhhc
Q 035449 4 SVVSLEKVKAFWHSQVH 20 (54)
Q Consensus 4 ~~~~~~~~k~f~~sqi~ 20 (54)
.+++++++++|++.++.
T Consensus 43 lavAv~~iQd~IN~~i~ 59 (63)
T 2fyz_A 43 LAIAVQAIQDHINTIMN 59 (63)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35778999999999986
No 4
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=36.14 E-value=10 Score=18.76 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=6.8
Q ss_pred HHHHhhhcc
Q 035449 44 LMRSYGDLM 52 (54)
Q Consensus 44 ~mRnfGdlm 52 (54)
-+|+|||.+
T Consensus 10 qlr~~gdkl 18 (27)
T 2jm6_A 10 QLRRIGDKV 18 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhHHH
Confidence 468999864
No 5
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=33.01 E-value=12 Score=18.16 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=7.3
Q ss_pred HHHHHhhhcc
Q 035449 43 FLMRSYGDLM 52 (54)
Q Consensus 43 ~~mRnfGdlm 52 (54)
.-.|+|||.+
T Consensus 9 ~qlrr~gdkl 18 (25)
T 3mqp_B 9 TQLRRFGDKL 18 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 3479999864
No 6
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=27.96 E-value=37 Score=26.91 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhccHHH-HHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Q 035449 9 EKVKAFWHSQVHDEEK-WALNAKLLRAGGLFAASIFLM-RSYGDLM 52 (54)
Q Consensus 9 ~~~k~f~~sqi~deek-~a~N~~llra~glFagsI~~m-RnfGdlm 52 (54)
+++-.+|-+|-.+..+ +..|..+ |-+-+-+| |||||..
T Consensus 466 ~~l~~~l~qe~~~~~~F~~~~v~l------~k~lf~l~~rn~~~~~ 505 (997)
T 1vsy_5 466 RDVTMNLVQDNETRGVFSSGNVSF------FSLVILLISSGFCELN 505 (997)
T ss_dssp HHHHHHHHHTTTTTCCCCHHHHHH------HHHHHHHHTTTTCCCC
T ss_pred HHHHHHHHhhccccCccccchHHH------HHHHHHHHhcccchhh
Confidence 4444455444222233 3344444 43334456 9999864
No 7
>2lke_A Integrin alpha-M; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens} PDB: 2lkj_A*
Probab=22.13 E-value=25 Score=16.65 Aligned_cols=10 Identities=50% Similarity=1.032 Sum_probs=7.4
Q ss_pred HHHHHhhhcc
Q 035449 43 FLMRSYGDLM 52 (54)
Q Consensus 43 ~~mRnfGdlm 52 (54)
||=|+|.|+|
T Consensus 4 FFKR~~ke~m 13 (26)
T 2lke_A 4 FFKRQYKDMM 13 (26)
T ss_dssp GHHHHHHHHH
T ss_pred chhhchHHHh
Confidence 4578888876
No 8
>2luv_A Integrin alpha-X; myristoylated, DPC micelles, cell adhesion; NMR {Homo sapiens}
Probab=25.71 E-value=22 Score=18.02 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=8.0
Q ss_pred HHHHHhhhcc
Q 035449 43 FLMRSYGDLM 52 (54)
Q Consensus 43 ~~mRnfGdlm 52 (54)
||=|||.|+|
T Consensus 4 FFKR~~kEmm 13 (35)
T 2luv_A 4 FFKRQYKEMM 13 (35)
Confidence 4579999887
No 9
>3g2e_A OORC subunit of 2-oxoglutarate:acceptor oxidoredu; structural genomics, PSI-2, protein structure initiative; 2.00A {Campylobacter jejuni}
Probab=19.24 E-value=1.3e+02 Score=18.87 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAG 35 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~ 35 (54)
++.|.+++.+++++. ++-.+.|++-++..
T Consensus 148 ~~~e~~~~ai~~~~~-~k~ve~N~~A~~~G 176 (194)
T 3g2e_A 148 IDLDVLKETMLHMVP-AKTRDANAKAFDLG 176 (194)
T ss_dssp SCHHHHHHHHHHHSC-GGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC-HHHHHHHHHHHHHH
Confidence 678999999998875 56688999988864
No 10
>3u97_A Ribonuclease toxin BRNT; RNAse SA/RELE small ribonuclease fold, bRNA, H; HET: MSE; 1.10A {Brucella abortus}
Probab=18.41 E-value=56 Score=20.06 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=10.1
Q ss_pred hccHHHHHHHHH
Q 035449 19 VHDEEKWALNAK 30 (54)
Q Consensus 19 i~deek~a~N~~ 30 (54)
-+||+|.+.|++
T Consensus 37 EWDe~K~~~Nl~ 48 (114)
T 3u97_A 37 IWDEPKRQTNIA 48 (114)
T ss_dssp ECCHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 369999999975
Done!