Query 035449
Match_columns 54
No_of_seqs 26 out of 28
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 04:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035449.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035449hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlga_ a.25.1.1 (A:) Non-hem 43.3 25 0.0018 19.8 4.8 43 6-48 117-159 (164)
2 d1kwga2 c.1.8.1 (A:1-393) A4 b 38.4 10 0.00076 21.3 2.3 21 17-37 8-28 (393)
3 d1hsta_ a.4.5.13 (A:) Histone 29.5 21 0.0015 18.5 2.5 21 5-25 21-41 (74)
4 d1euma_ a.25.1.1 (A:) Non-hem 26.9 42 0.0031 18.7 3.8 38 7-44 115-152 (161)
5 d1vema2 c.1.8.1 (A:1-417) Bact 23.8 19 0.0014 24.9 2.1 21 17-37 23-43 (417)
6 d1n0ea_ b.129.1.2 (A:) Hypothe 17.8 20 0.0014 20.6 0.9 12 18-29 117-128 (141)
7 d1uoua2 c.27.1.1 (A:101-373) T 17.1 35 0.0025 21.1 2.1 20 4-23 236-255 (273)
8 d1nm2a1 c.19.1.1 (A:0-133,A:19 15.7 38 0.0028 20.4 2.0 30 7-36 178-207 (253)
9 d1a8ya1 c.47.1.3 (A:3-126) Cal 15.6 35 0.0026 17.8 1.6 18 5-22 107-124 (124)
10 d1mlaa1 c.19.1.1 (A:3-127,A:19 15.6 33 0.0024 20.3 1.6 31 7-37 167-197 (235)
No 1
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]}
Probab=43.33 E-value=25 Score=19.77 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035449 6 VSLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFLMRSY 48 (54)
Q Consensus 6 ~~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~mRnf 48 (54)
...+.++.|+++|+-.+.+...=+..|+-+|==..+++++-++
T Consensus 117 ~t~~fl~~fl~eQ~e~~~~l~~~l~~l~~~g~~~~~~~~~D~~ 159 (164)
T d1vlga_ 117 ATVSFLKWFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRY 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 3457888999999998888888888888887666677766543
No 2
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]}
Probab=38.40 E-value=10 Score=21.27 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.7
Q ss_pred hhhccHHHHHHHHHHHHHHHH
Q 035449 17 SQVHDEEKWALNAKLLRAGGL 37 (54)
Q Consensus 17 sqi~deek~a~N~~llra~gl 37 (54)
.+.+|++.|+.-++++|.+|+
T Consensus 8 p~~~~~~~~~~D~~~~~~~G~ 28 (393)
T d1kwga2 8 PEHWPKERWKEDARRMREAGL 28 (393)
T ss_dssp GGGSCHHHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHHcCC
Confidence 356788999999999999985
No 3
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=29.49 E-value=21 Score=18.48 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHhhhccHHHH
Q 035449 5 VVSLEKVKAFWHSQVHDEEKW 25 (54)
Q Consensus 5 ~~~~~~~k~f~~sqi~deek~ 25 (54)
..|...|+.||.+.+.+++++
T Consensus 21 GsS~~AI~kyI~~~y~~~~~~ 41 (74)
T d1hsta_ 21 GSSRQSIQKYIKSHYKVGHNA 41 (74)
T ss_dssp CEEHHHHHHHHHHHSCCCTTH
T ss_pred CcCHHHHHHHHHHHCCCchhH
Confidence 357788999999999888764
No 4
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]}
Probab=26.94 E-value=42 Score=18.65 Aligned_cols=38 Identities=11% Similarity=0.189 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGLFAASIFL 44 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~glFagsI~~ 44 (54)
..+.++.|+++|+-.+.....-++-|+-+|=-..+.++
T Consensus 115 t~~fl~~fl~eQ~e~~~~~~~~l~~l~~~g~~~~~~y~ 152 (161)
T d1euma_ 115 TFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYF 152 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 45788899999999888888888888776533334443
No 5
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]}
Probab=23.83 E-value=19 Score=24.88 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=19.1
Q ss_pred hhhccHHHHHHHHHHHHHHHH
Q 035449 17 SQVHDEEKWALNAKLLRAGGL 37 (54)
Q Consensus 17 sqi~deek~a~N~~llra~gl 37 (54)
+|+.|++.|+.-++.||.+|+
T Consensus 23 ~~~~~~~~~~~~L~~LK~aGV 43 (417)
T d1vema2 23 PEVTNWETFENDLRWAKQNGF 43 (417)
T ss_dssp GGTSCHHHHHHHHHHHHHTTE
T ss_pred cccCCHHHHHHHHHHHHHcCC
Confidence 479999999999999999985
No 6
>d1n0ea_ b.129.1.2 (A:) Hypothetical protein MraZ {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=17.82 E-value=20 Score=20.57 Aligned_cols=12 Identities=8% Similarity=0.183 Sum_probs=9.2
Q ss_pred hhccHHHHHHHH
Q 035449 18 QVHDEEKWALNA 29 (54)
Q Consensus 18 qi~deek~a~N~ 29 (54)
||+||++|+...
T Consensus 117 EIW~~~~~~~~~ 128 (141)
T d1n0ea_ 117 EIWDKKLYEDYL 128 (141)
T ss_dssp EEEEHHHHHHHH
T ss_pred EEeCHHHHHHHH
Confidence 788999887643
No 7
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.10 E-value=35 Score=21.05 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHhhhccHH
Q 035449 4 SVVSLEKVKAFWHSQVHDEE 23 (54)
Q Consensus 4 ~~~~~~~~k~f~~sqi~dee 23 (54)
+..+.+||++|+..|=-||+
T Consensus 236 SGkAl~kLe~lI~Aqgg~~~ 255 (273)
T d1uoua2 236 DGSALGRFERMLAAQGVDPG 255 (273)
T ss_dssp SSHHHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHHHHCCCHH
Confidence 55678999999999999997
No 8
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=15.75 E-value=38 Score=20.37 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGG 36 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~g 36 (54)
+-+.++++|..|+..|=.|..-++-|...|
T Consensus 178 ~~~~~~~~l~~ql~~pV~f~~~i~~l~~~g 207 (253)
T d1nm2a1 178 SGTEVLDRLVGQVANPVRWDLCMETFKELG 207 (253)
T ss_dssp CHHHHHHHHHHHTTSCEEHHHHHHHHHHTT
T ss_pred hcchhHhhhhhhhcccccHHHHHHHHHHCC
Confidence 357889999999999999999888877654
No 9
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=15.62 E-value=35 Score=17.81 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHhhhccH
Q 035449 5 VVSLEKVKAFWHSQVHDE 22 (54)
Q Consensus 5 ~~~~~~~k~f~~sqi~de 22 (54)
..+.|.|.+|+..++.||
T Consensus 107 ~r~~~~l~~fi~~~l~~P 124 (124)
T d1a8ya1 107 EFSADTLVEFLLDVLEDP 124 (124)
T ss_dssp CCSHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 356789999999988876
No 10
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]}
Probab=15.59 E-value=33 Score=20.31 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Q 035449 7 SLEKVKAFWHSQVHDEEKWALNAKLLRAGGL 37 (54)
Q Consensus 7 ~~~~~k~f~~sqi~deek~a~N~~llra~gl 37 (54)
+.+.++++|.+|+..|=+|..-++-|...|.
T Consensus 167 ~~~~~~~~l~~ql~~pV~f~~~i~~l~~~g~ 197 (235)
T d1mlaa1 167 NGDAIRDALVRQLYNPVQWTKSVEYMAAQGV 197 (235)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhccCCccHHHHHHHHHHCCC
Confidence 4577899999999999989998888877653
Done!