AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>035451
MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK
SGKK

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT1G15270 AT1G15270 AT1G15270	protein from Arabidopsis thaliana	1.5e-10
BLAST match view associations BLAST with AT3G16040 AT3G16040 AT3G16040	protein from Arabidopsis thaliana	2.3e-07
BLAST match view associations BLAST with CG13364 CG13364 CG13364	protein from Drosophila melanogaster	6.3e-05
BLAST match view associations BLAST with tma7 tma7 tma7 translational machinery associated 7 homolog (S. cerevisiae)	gene_product from Danio rerio	0.00035
BLAST match view associations BLAST with TMA7 TMA7 TMA7 Protein of unknown that associates with ribosomes	gene from Saccharomyces cerevisiae	0.00045

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035451
        (64 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037768 - symbol:AT1G15270 "AT1G15270" species...   148  1.5e-10   1
TAIR|locus:2093412 - symbol:AT3G16040 "AT3G16040" species...   118  2.3e-07   1
FB|FBgn0026879 - symbol:CG13364 species:7227 "Drosophila ...    95  6.3e-05   1
ZFIN|ZDB-GENE-061027-176 - symbol:tma7 "translational mac...    88  0.00035   1
SGD|S000007246 - symbol:TMA7 "Protein of unknown that ass...    87  0.00045   1
ASPGD|ASPL0000076491 - symbol:AN4937 species:162425 "Emer...    84  0.00093   1


>TAIR|locus:2037768 [details] [associations]
            symbol:AT1G15270 "AT1G15270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005886 "plasma membrane"
            evidence=IDA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
            EMBL:AC007591 OMA:KKIKEMA InterPro:IPR015157 Pfam:PF09072
            HOGENOM:HOG000197071 ProtClustDB:CLSN2687811 EMBL:AF336925
            EMBL:AY046003 EMBL:AY062704 EMBL:AY093387 EMBL:AY086188
            IPI:IPI00517894 PIR:H86286 RefSeq:NP_563969.1 UniGene:At.11417
            STRING:Q9XI42 PaxDb:Q9XI42 PRIDE:Q9XI42 EnsemblPlants:AT1G15270.1
            GeneID:838094 KEGG:ath:AT1G15270 TAIR:At1g15270 eggNOG:NOG321488
            InParanoid:Q9XI42 ArrayExpress:Q9XI42 Genevestigator:Q9XI42
            Uniprot:Q9XI42
        Length = 64

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/30 (96%), Positives = 29/30 (96%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLANI 30
             MSSKQGGKAKPLKQPKADKKEYDE DLANI
Sbjct:     1 MSSKQGGKAKPLKQPKADKKEYDETDLANI 30


>TAIR|locus:2093412 [details] [associations]
            symbol:AT3G16040 "AT3G16040" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002686
            GenomeReviews:BA000014_GR UniGene:At.66514 UniGene:At.7601
            InterPro:IPR015157 Pfam:PF09072 HOGENOM:HOG000197071 EMBL:BT026009
            IPI:IPI00528277 RefSeq:NP_566533.1 EnsemblPlants:AT3G16040.1
            GeneID:820849 KEGG:ath:AT3G16040 TAIR:At3g16040 eggNOG:NOG298211
            InParanoid:Q1EBS5 OMA:DEHDMEL ProtClustDB:CLSN2687811
            Genevestigator:Q1EBS5 Uniprot:Q1EBS5
        Length = 64

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/27 (81%), Positives = 24/27 (88%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDL 27
             MSSKQGGK KPLKQPK+ KKEYDE D+
Sbjct:     1 MSSKQGGKLKPLKQPKSGKKEYDEHDM 27


>FB|FBgn0026879 [details] [associations]
            symbol:CG13364 species:7227 "Drosophila melanogaster"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] EMBL:AE014298 EMBL:AL031581
            GeneTree:ENSGT00390000003710 OMA:KKIKEMA InterPro:IPR015157
            Pfam:PF09072 eggNOG:NOG79537 EMBL:BT011542 PIR:T13381
            RefSeq:NP_652500.1 UniGene:Dm.6837 STRING:Q9XZS3 PaxDb:Q9XZS3
            PRIDE:Q9XZS3 EnsemblMetazoa:FBtr0070159 GeneID:50364
            KEGG:dme:Dmel_CG13364 UCSC:CG13364-RA FlyBase:FBgn0026879
            InParanoid:Q9XZS3 OrthoDB:EOG4PG4HX GenomeRNAi:50364 NextBio:840789
            Bgee:Q9XZS3 Uniprot:Q9XZS3
        Length = 64

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/28 (60%), Positives = 21/28 (75%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MS ++GGK KPLK PK D K+ DE D+A
Sbjct:     1 MSGREGGKKKPLKAPKKDSKDLDEDDMA 28


>ZFIN|ZDB-GENE-061027-176 [details] [associations]
            symbol:tma7 "translational machinery associated 7
            homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
            "molecular_function" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            ZFIN:ZDB-GENE-061027-176 GeneTree:ENSGT00390000003710 OMA:KKIKEMA
            InterPro:IPR015157 Pfam:PF09072 EMBL:BC124431 IPI:IPI00810395
            RefSeq:NP_001153306.1 UniGene:Dr.78186 STRING:Q05AK9 PRIDE:Q05AK9
            Ensembl:ENSDART00000106141 Ensembl:ENSDART00000129942 GeneID:768290
            KEGG:dre:768290 CTD:51372 eggNOG:NOG79537 HOGENOM:HOG000197071
            HOVERGEN:HBG107420 InParanoid:Q05AK9 OrthoDB:EOG43210Z
            NextBio:20918554 Bgee:Q05AK9 Uniprot:Q05AK9
        Length = 64

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 16/28 (57%), Positives = 20/28 (71%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MS ++GGK KPLK PK   KE DE ++A
Sbjct:     1 MSGREGGKKKPLKAPKKQSKEMDEDEMA 28


>SGD|S000007246 [details] [associations]
            symbol:TMA7 "Protein of unknown that associates with
            ribosomes" species:4932 "Saccharomyces cerevisiae" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
            [GO:0006412 "translation" evidence=IEA] [GO:0002181 "cytoplasmic
            translation" evidence=IMP] SGD:S000007246 GO:GO:0005634
            GO:GO:0005737 EMBL:BK006945 GO:GO:0002181 EMBL:U17244
            GeneTree:ENSGT00390000003710 OMA:KKIKEMA InterPro:IPR015157
            Pfam:PF09072 HOGENOM:HOG000197071 RefSeq:NP_013364.1
            ProteinModelPortal:Q3E764 MINT:MINT-2493332 STRING:Q3E764
            PaxDb:Q3E764 PeptideAtlas:Q3E764 EnsemblFungi:YLR262C-A
            GeneID:850967 KEGG:sce:YLR262C-A CYGD:YLR262c-a eggNOG:NOG305240
            NextBio:967457 Genevestigator:Q3E764 Uniprot:Q3E764
        Length = 64

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query:     1 MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
             MSS+QGGK KPLKQ K  +++ D +D+A
Sbjct:     1 MSSRQGGKMKPLKQKKKQQQDLDPEDIA 28


>ASPGD|ASPL0000076491 [details] [associations]
            symbol:AN4937 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] EMBL:BN001303 EMBL:AACD01000084 OMA:KKIKEMA
            InterPro:IPR015157 Pfam:PF09072 HOGENOM:HOG000197071
            RefSeq:XP_662541.1 EnsemblFungi:CADANIAT00005460 GeneID:2872736
            KEGG:ani:AN4937.2 eggNOG:NOG280417 Uniprot:Q5B3E3
        Length = 68

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query:     2 SSKQGGKAKPLKQPKADKKEYDEQDLA 28
             +S++GGK KPLK  K +K+E D+ DLA
Sbjct:     4 ASREGGKVKPLKAAKKEKRELDDDDLA 30


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.299   0.122   0.322    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       64        30   0.00091  102 3  11 24  0.39    24
                                                     29  0.44    22


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  257 (28 KB)
  Total size of DFA:  42 KB (2055 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.04u 0.12s 8.16t   Elapsed:  00:00:01
  Total cpu time:  8.04u 0.12s 8.16t   Elapsed:  00:00:01
  Start:  Thu May  9 16:23:23 2013   End:  Thu May  9 16:23:24 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data