BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035451
         (64 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4SUE2|TMA7_TETNG Translation machinery-associated protein 7 OS=Tetraodon
          nigroviridis GN=tma7 PE=3 SV=1
          Length = 64

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLK PK   K+ D+ D+A  QK+KE++KA++ L+A+A  KG  GGSG+KK
Sbjct: 1  MSGREGGKKKPLKAPKKQSKDMDDDDVAFKQKQKEDQKAMEALKARASGKGPLGGSGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


>sp|Q05AK9|TMA7_DANRE Translation machinery-associated protein 7 OS=Danio rerio GN=tma7
          PE=3 SV=1
          Length = 64

 Score = 35.0 bits (79), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSF 53
          MS ++GGK KPLK PK   KE DE ++A  QK+KE++KA+++L+AKA  KG  
Sbjct: 1  MSGREGGKKKPLKAPKKQSKEMDEDEMAFKQKQKEDQKAMEQLKAKAAGKGPL 53


>sp|Q1HRV4|TMA7_AEDAE Translation machinery-associated protein 7 homolog OS=Aedes
          aegypti PE=3 SV=1
          Length = 64

 Score = 33.9 bits (76), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 47/64 (73%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          M+ ++GGK KPLKQPK D KE DE+D+A  QK+KE++KA++  + KA + G     G+KK
Sbjct: 1  MTGREGGKKKPLKQPKKDGKEMDEEDMAFKQKQKEQQKAMEAAKQKAAKGGPLVTGGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


>sp|Q7PNC0|TMA7_ANOGA Translation machinery-associated protein 7 homolog OS=Anopheles
          gambiae GN=AGAP008008 PE=3 SV=2
          Length = 64

 Score = 32.7 bits (73), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLK PK ++ E DE   A   K+KE++KAL+  + KA + G     G+KK
Sbjct: 1  MSGREGGKKKPLKAPKKEQSEMDEDTAAFKAKQKEQQKALEAAKQKATKGGPLLQGGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


>sp|Q3E764|TMA7_YEAST Translation machinery-associated protein 7 OS=Saccharomyces
          cerevisiae (strain ATCC 204508 / S288c) GN=TMA7 PE=1
          SV=1
          Length = 64

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/28 (57%), Positives = 22/28 (78%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLA 28
          MSS+QGGK KPLKQ K  +++ D +D+A
Sbjct: 1  MSSRQGGKMKPLKQKKKQQQDLDPEDIA 28


>sp|Q8K003|TMA7_MOUSE Translation machinery-associated protein 7 OS=Mus musculus
          GN=Tma7 PE=2 SV=1
          Length = 64

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 47/64 (73%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLKQPK   KE DE+D A  QK+KEE+K L+EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


>sp|Q9Y2S6|TMA7_HUMAN Translation machinery-associated protein 7 OS=Homo sapiens
          GN=TMA7 PE=1 SV=1
          Length = 64

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 47/64 (73%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLKQPK   KE DE+D A  QK+KEE+K L+EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


>sp|A1A4Q4|TMA7_BOVIN Translation machinery-associated protein 7 OS=Bos taurus GN=TMA7
          PE=3 SV=1
          Length = 64

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 39/64 (60%), Positives = 47/64 (73%)

Query: 1  MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKK 60
          MS ++GGK KPLKQPK   KE DE+D A  QK+KEE+K L+EL+AKA  KG     G+KK
Sbjct: 1  MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60

Query: 61 SGKK 64
          SGKK
Sbjct: 61 SGKK 64


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.298    0.120    0.307 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,210,693
Number of Sequences: 539616
Number of extensions: 860685
Number of successful extensions: 5803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 5135
Number of HSP's gapped (non-prelim): 645
length of query: 64
length of database: 191,569,459
effective HSP length: 36
effective length of query: 28
effective length of database: 172,143,283
effective search space: 4820011924
effective search space used: 4820011924
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 55 (25.8 bits)