Query 035451
Match_columns 64
No_of_seqs 104 out of 167
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 03:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09072 TMA7: Translation mac 100.0 3.7E-36 8.1E-41 183.9 6.8 63 2-64 1-63 (63)
2 KOG4766 Uncharacterized conser 100.0 2E-34 4.2E-39 176.9 6.5 64 1-64 1-64 (64)
3 PF10187 Nefa_Nip30_N: N-termi 33.7 98 0.0021 19.8 4.0 19 20-38 66-84 (102)
4 PF10513 EPL1: Enhancer of pol 28.8 54 0.0012 21.3 2.2 16 21-36 121-136 (160)
5 PF04568 IATP: Mitochondrial A 28.2 92 0.002 20.2 3.2 22 21-42 58-79 (100)
6 PF12884 TORC_N: Transducer of 24.4 81 0.0017 19.6 2.3 19 28-46 11-29 (67)
7 PF07713 DUF1604: Protein of u 22.2 45 0.00099 21.6 0.9 8 21-28 65-72 (87)
8 PF10217 DUF2039: Uncharacteri 15.0 84 0.0018 20.3 0.9 12 7-18 47-58 (92)
9 TIGR00739 yajC preprotein tran 14.9 1.2E+02 0.0025 18.7 1.5 26 33-58 24-50 (84)
10 cd02987 Phd_like_Phd Phosducin 14.5 2.9E+02 0.0064 18.5 3.5 27 21-49 31-57 (175)
No 1
>PF09072 TMA7: Translation machinery associated TMA7; InterPro: IPR015157 TMA7 plays a role in protein translation. Deletions of the TMA7 gene results in altered protein synthesis rates [].
Probab=100.00 E-value=3.7e-36 Score=183.89 Aligned_cols=63 Identities=63% Similarity=0.873 Sum_probs=62.3
Q ss_pred CCCCCCCcCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCC
Q 035451 2 SSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGKK 64 (64)
Q Consensus 2 sgr~GGKkKPLK~pKK~~ke~DEeD~AfkqKqkee~k~~kel~~ka~~kgpl~~~giKKSgKK 64 (64)
|||+|||+|||||||++++||||||+||+++|+|++++++||+++|.++|||++||||+||||
T Consensus 1 SgreGGK~KPLK~pKK~~ke~DEeD~AfKqKqkee~k~lke~~~ka~~kgpl~~ggiKKSgKK 63 (63)
T PF09072_consen 1 SGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKALKELKAKAKGKGPLATGGIKKSGKK 63 (63)
T ss_pred CCccccccCcCcCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCCccccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999996
No 2
>KOG4766 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=176.88 Aligned_cols=64 Identities=69% Similarity=0.937 Sum_probs=63.3
Q ss_pred CCCCCCCCcCCCCCcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCC
Q 035451 1 MSSKQGGKAKPLKQPKADKKEYDEQDLANIQKKKEEEKALKELRAKAQQKGSFGGSGLKKSGKK 64 (64)
Q Consensus 1 Msgr~GGKkKPLK~pKK~~ke~DEeD~AfkqKqkee~k~~kel~~ka~~kgpl~~~giKKSgKK 64 (64)
||||||||+|||||||++++||||||+||+|+|++|+++++||+++|.++|||++|||++||++
T Consensus 1 MsgrqGGK~KPLKqpKk~~ke~deed~a~kqkqK~e~ka~kel~Aka~~kg~~~g~Gikksgkk 64 (64)
T KOG4766|consen 1 MSGRQGGKKKPLKQPKKQAKELDEEDMAFKQKQKEEAKALKELKAKASQKGPLVGGGIKKSGKK 64 (64)
T ss_pred CCcccccccCccccchhhhhccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 3
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=33.75 E-value=98 Score=19.85 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=13.9
Q ss_pred ccCCHHHHHHHHHHHHHHH
Q 035451 20 KEYDEQDLANIQKKKEEEK 38 (64)
Q Consensus 20 ke~DEeD~AfkqKqkee~k 38 (64)
.-||||++.|-......+.
T Consensus 66 r~LDedE~eFLd~v~~~~~ 84 (102)
T PF10187_consen 66 RGLDEDEIEFLDEVEEKKR 84 (102)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4599999999876654333
No 4
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=28.84 E-value=54 Score=21.32 Aligned_cols=16 Identities=19% Similarity=0.300 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 035451 21 EYDEQDLANIQKKKEE 36 (64)
Q Consensus 21 e~DEeD~AfkqKqkee 36 (64)
+|||+|..|.+...+.
T Consensus 121 DmDeeD~~wL~~~N~~ 136 (160)
T PF10513_consen 121 DMDEEDEEWLELLNKK 136 (160)
T ss_pred CCchHHHHHHHHHHHH
Confidence 6999999999887655
No 5
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=28.22 E-value=92 Score=20.24 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=15.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH
Q 035451 21 EYDEQDLANIQKKKEEEKALKE 42 (64)
Q Consensus 21 e~DEeD~AfkqKqkee~k~~ke 42 (64)
|--+||.-|.++++|+-++|++
T Consensus 58 E~A~E~~Y~r~~EkEqL~~Lk~ 79 (100)
T PF04568_consen 58 EAAQEEQYFRKKEKEQLKKLKE 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 4456899999998876655544
No 6
>PF12884 TORC_N: Transducer of regulated CREB activity, N terminus; InterPro: IPR024783 This entry represents the N-terminal domain of TORC proteins. TORC (transducer of regulated CREB activity) is a protein family of coactivators that enhances the activity of CRE-dependent transcription via a phosphorylation-independent interaction with the bZIP DNA binding/dimerisation domain of CREB (cAMP Response Element-Binding) []. The proteins display a highly conserved predicted N-terminal coiled-coil domain and an invariant sequence matching a protein kinase A (PKA) phosphorylation consensus sequence (RKXS) []. The coiled-coil structure interacts with the bZIP domain of CREB []. This interaction may occur via ionic bonds because it is disrupted under high-salt conditions []. In addition to CREB-binding, the N-terminal domain plays a role in the tetramer formation of TORCs [], but the physiological function of the multimeric complex has not been clarified yet.; GO: 0008140 cAMP response element binding protein binding, 0051289 protein homotetramerization
Probab=24.42 E-value=81 Score=19.60 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035451 28 ANIQKKKEEEKALKELRAK 46 (64)
Q Consensus 28 AfkqKqkee~k~~kel~~k 46 (64)
-+.|||.||..+++++..-
T Consensus 11 Lh~QKQaEetaaFE~iM~e 29 (67)
T PF12884_consen 11 LHNQKQAEETAAFEEIMKE 29 (67)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3678999999998886543
No 7
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=22.22 E-value=45 Score=21.59 Aligned_cols=8 Identities=63% Similarity=0.708 Sum_probs=6.6
Q ss_pred cCCHHHHH
Q 035451 21 EYDEQDLA 28 (64)
Q Consensus 21 e~DEeD~A 28 (64)
=|||||++
T Consensus 65 fMDeeD~~ 72 (87)
T PF07713_consen 65 FMDEEDLA 72 (87)
T ss_pred ccCHHHHH
Confidence 39999985
No 8
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=14.98 E-value=84 Score=20.34 Aligned_cols=12 Identities=67% Similarity=0.899 Sum_probs=9.9
Q ss_pred CCcCCCCCcchh
Q 035451 7 GKAKPLKQPKAD 18 (64)
Q Consensus 7 GKkKPLK~pKK~ 18 (64)
||-|||.+|++=
T Consensus 47 ~KYKpLt~p~kC 58 (92)
T PF10217_consen 47 GKYKPLTQPKKC 58 (92)
T ss_pred cCcccCCCCccc
Confidence 688999999863
No 9
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=14.86 E-value=1.2e+02 Score=18.70 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHh-cCCCCCCCCC
Q 035451 33 KKEEEKALKELRAKAQ-QKGSFGGSGL 58 (64)
Q Consensus 33 qkee~k~~kel~~ka~-~kgpl~~~gi 58 (64)
|+.++++.+++.+... |--=+.+|||
T Consensus 24 qkK~~k~~~~m~~~L~~Gd~VvT~gGi 50 (84)
T TIGR00739 24 QRKRRKAHKKLIESLKKGDKVLTIGGI 50 (84)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCe
Confidence 4455666677776664 4444455665
No 10
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=14.52 E-value=2.9e+02 Score=18.51 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 035451 21 EYDEQDLANIQKKKEEEKALKELRAKAQQ 49 (64)
Q Consensus 21 e~DEeD~AfkqKqkee~k~~kel~~ka~~ 49 (64)
+|||+|-+|-+.-+ ++.++||+..+..
T Consensus 31 ~~~~~~e~~l~~~R--~~R~~el~~~~~~ 57 (175)
T cd02987 31 DDDEDKEEFLQQYR--EQRMQEMHAKLPF 57 (175)
T ss_pred hhhhhHHHHHHHHH--HHHHHHHHHhccc
Confidence 34444444666644 3456777665533
Done!