Query 035451
Match_columns 64
No_of_seqs 104 out of 167
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 04:22:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v7q_J ATPase inhibitor; ION t 40.3 31 0.001 20.5 3.2 20 22-41 27-46 (66)
2 1gmj_A ATPase inhibitor; coile 23.2 85 0.0029 19.2 3.2 20 22-41 27-46 (84)
3 1v66_A Protein inhibitor of ac 13.2 31 0.0011 20.4 -0.5 12 53-64 23-34 (65)
4 1b0n_B Protein (SINI protein); 10.0 2E+02 0.0069 16.0 2.2 23 13-35 2-24 (57)
5 3brv_B NF-kappa-B essential mo 9.5 2.1E+02 0.0072 17.0 2.3 16 24-39 36-51 (70)
6 1jzp_A Skeletal dihydropydrine 9.3 2.2E+02 0.0075 14.0 2.3 14 31-44 4-17 (26)
7 2f8n_G Core histone macro-H2A. 9.0 94 0.0032 19.5 0.6 9 1-10 1-9 (120)
8 3iz5_v 60S acidic ribosomal pr 8.7 73 0.0025 20.1 0.0 16 14-29 94-109 (113)
9 2axc_A Colicin E7; translocati 7.6 3.3E+02 0.011 19.9 3.0 18 28-45 236-253 (264)
10 3bas_A Myosin heavy chain, str 6.8 4.3E+02 0.015 15.2 2.9 23 7-29 1-23 (89)
No 1
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=40.31 E-value=31 Score=20.49 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 035451 22 YDEQDLANIQKKKEEEKALK 41 (64)
Q Consensus 22 ~DEeD~AfkqKqkee~k~~k 41 (64)
--.||.-|.++++|+-.+|+
T Consensus 27 aA~Ee~Yfrk~ekEQL~~LK 46 (66)
T 2v7q_J 27 QAEEERYFRARAKEQLAALK 46 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34689999999887666544
No 2
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.17 E-value=85 Score=19.24 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 035451 22 YDEQDLANIQKKKEEEKALK 41 (64)
Q Consensus 22 ~DEeD~AfkqKqkee~k~~k 41 (64)
--.||..|.++++|+-.+|+
T Consensus 27 aA~Ee~YfrqkekEqL~~LK 46 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALK 46 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34688899999888766655
No 3
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=13.19 E-value=31 Score=20.45 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=8.9
Q ss_pred CCCCCCcccCCC
Q 035451 53 FGGSGLKKSGKK 64 (64)
Q Consensus 53 l~~~giKKSgKK 64 (64)
|+..|+.|||.|
T Consensus 23 Lg~~gr~KsGrK 34 (65)
T 1v66_A 23 LGYAGRNKHGRK 34 (65)
T ss_dssp HHTTCCCCCSCH
T ss_pred HHHcCCCCcCcH
Confidence 346788999975
No 4
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=9.97 E-value=2e+02 Score=16.02 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=13.9
Q ss_pred CCcchhhccCCHHHHHHHHHHHH
Q 035451 13 KQPKADKKEYDEQDLANIQKKKE 35 (64)
Q Consensus 13 K~pKK~~ke~DEeD~AfkqKqke 35 (64)
|..|.+..++|.|=+.|-..-++
T Consensus 2 ~~~k~~~~~~d~ewl~LI~~Ak~ 24 (57)
T 1b0n_B 2 KNAKQEHFELDQEWVELMVEAKE 24 (57)
T ss_dssp -------CCCCHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHH
Confidence 55678889999999999887664
No 5
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=9.55 E-value=2.1e+02 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 035451 24 EQDLANIQKKKEEEKA 39 (64)
Q Consensus 24 EeD~AfkqKqkee~k~ 39 (64)
||=.+|+.+|++|..=
T Consensus 36 eeL~~wqekQkeEref 51 (70)
T 3brv_B 36 EELLHFQASQREEKEF 51 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH
Confidence 5567899999987653
No 6
>1jzp_A Skeletal dihydropydrine receptor; alpha helical peptide, DHPR, D-isomer, signaling protein; NMR {Synthetic} SCOP: j.68.1.1
Probab=9.32 E-value=2.2e+02 Score=13.96 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHH
Q 035451 31 QKKKEEEKALKELR 44 (64)
Q Consensus 31 qKqkee~k~~kel~ 44 (64)
||.++++..++.|.
T Consensus 4 qKekeEe~kr~k~~ 17 (26)
T 1jzp_A 4 QKAKAEERKRRKMS 17 (26)
T ss_pred HHHHHHHHHHHHHH
Confidence 45567777777764
No 7
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=9.05 E-value=94 Score=19.49 Aligned_cols=9 Identities=67% Similarity=0.852 Sum_probs=0.0
Q ss_pred CCCCCCCCcC
Q 035451 1 MSSKQGGKAK 10 (64)
Q Consensus 1 Msgr~GGKkK 10 (64)
||||. |+.+
T Consensus 1 m~~~~-~~~~ 9 (120)
T 2f8n_G 1 MSSRG-GKKK 9 (120)
T ss_dssp ----------
T ss_pred CCCCC-CCCC
Confidence 88874 5543
No 8
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=8.70 E-value=73 Score=20.06 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred CcchhhccCCHHHHHH
Q 035451 14 QPKADKKEYDEQDLAN 29 (64)
Q Consensus 14 ~pKK~~ke~DEeD~Af 29 (64)
..|++.+|-.+||+-|
T Consensus 94 e~k~ee~EEsDdDmGF 109 (113)
T 3iz5_v 94 EEKVVEKEESDDDMGF 109 (113)
T ss_dssp ----------------
T ss_pred hhhccccccccccccc
Confidence 3444556667778876
No 9
>2axc_A Colicin E7; translocation domain, hydrolase; 1.70A {Escherichia coli str}
Probab=7.60 E-value=3.3e+02 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035451 28 ANIQKKKEEEKALKELRA 45 (64)
Q Consensus 28 AfkqKqkee~k~~kel~~ 45 (64)
.|+|+|-||.++..|+..
T Consensus 236 e~kqrqeee~k~~qew~~ 253 (264)
T 2axc_A 236 QVKQRQDEEKRLQQEWND 253 (264)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468888888887777653
No 10
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=6.79 E-value=4.3e+02 Score=15.24 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=7.3
Q ss_pred CCcCCCCCcchhhccCCHHHHHH
Q 035451 7 GKAKPLKQPKADKKEYDEQDLAN 29 (64)
Q Consensus 7 GKkKPLK~pKK~~ke~DEeD~Af 29 (64)
|+-|||=+--....+|..=+-.|
T Consensus 1 ~kVKPLL~~~~~eeEm~~~eeel 23 (89)
T 3bas_A 1 GSHMPLLSIARQEEEMKEQLKQM 23 (89)
T ss_dssp ---------CHHHHHHHHHHHHH
T ss_pred CCCCcccccchhHHHHHHHHHHH
Confidence 56788866555556565444444
Done!