Query 035451
Match_columns 64
No_of_seqs 104 out of 167
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 04:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035451.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035451hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh1a1 b.110.1.1 (A:10-312) C 13.8 67 0.0049 22.2 3.0 19 28-46 284-302 (303)
2 d1v54d_ f.23.1.1 (D:) Mitochon 11.7 70 0.0051 19.5 2.4 15 20-34 28-42 (144)
3 d1v66a_ a.140.2.1 (A:) p53 bin 8.8 26 0.0019 19.4 -0.5 11 54-64 24-34 (65)
4 d2cuqa2 g.39.1.3 (A:8-42) Four 6.2 85 0.0062 15.3 0.8 10 50-59 15-24 (35)
5 d1tiga_ d.68.1.1 (A:) Translat 4.9 2.4E+02 0.017 15.1 2.4 14 22-35 12-25 (88)
6 d1x48a1 d.50.1.1 (A:8-83) dsRN 4.7 2.6E+02 0.019 14.1 3.5 22 35-56 53-74 (76)
7 d1jeqa1 a.140.2.1 (A:559-609) 4.2 96 0.007 15.6 0.2 12 40-51 20-31 (51)
8 d1irxa2 c.26.1.1 (A:3-319) Cla 4.1 89 0.0065 17.7 0.0 7 1-7 278-284 (317)
9 d2b5ua2 b.110.1.1 (A:84-315) C 4.1 3.4E+02 0.025 17.2 3.0 16 28-43 212-227 (232)
10 d1olma1 a.5.3.1 (A:1-75) Super 4.1 1.3E+02 0.0094 15.2 0.7 13 36-48 12-24 (75)
No 1
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.78 E-value=67 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035451 28 ANIQKKKEEEKALKELRAK 46 (64)
Q Consensus 28 AfkqKqkee~k~~kel~~k 46 (64)
.|+|+|.||.++..|...+
T Consensus 284 ~~krRQEeEn~~k~~~~~~ 302 (303)
T d1rh1a1 284 SLSQRQEAENNAKDDFRVK 302 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhhhhhhhccc
Confidence 5899999999998887654
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.67 E-value=70 Score=19.52 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.8
Q ss_pred ccCCHHHHHHHHHHH
Q 035451 20 KEYDEQDLANIQKKK 34 (64)
Q Consensus 20 ke~DEeD~AfkqKqk 34 (64)
+|++.|..|.++|++
T Consensus 28 ~e~t~ei~aLreKeK 42 (144)
T d1v54d_ 28 KNLSASQKALKEKEK 42 (144)
T ss_dssp CCCCHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHhh
Confidence 578889999999987
No 3
>d1v66a_ a.140.2.1 (A:) p53 binding domain of protein inhibitor of activated STAT protein 1, PIAS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.78 E-value=26 Score=19.39 Aligned_cols=11 Identities=45% Similarity=0.739 Sum_probs=8.1
Q ss_pred CCCCCcccCCC
Q 035451 54 GGSGLKKSGKK 64 (64)
Q Consensus 54 ~~~giKKSgKK 64 (64)
+..|..|||.|
T Consensus 24 g~~gr~KsGrK 34 (65)
T d1v66a_ 24 GYAGRNKHGRK 34 (65)
T ss_dssp HTTCCCCCSCH
T ss_pred HHcCCCCcccH
Confidence 45688888875
No 4
>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.22 E-value=85 Score=15.25 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=7.5
Q ss_pred CCCCCCCCCc
Q 035451 50 KGSFGGSGLK 59 (64)
Q Consensus 50 kgpl~~~giK 59 (64)
+-|+.+|||-
T Consensus 15 kk~It~GGvt 24 (35)
T d2cuqa2 15 SKTLTQGGVT 24 (35)
T ss_dssp CCCCCSCCEE
T ss_pred CCccccCcee
Confidence 5688888874
No 5
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.90 E-value=2.4e+02 Score=15.07 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHHH
Q 035451 22 YDEQDLANIQKKKE 35 (64)
Q Consensus 22 ~DEeD~AfkqKqke 35 (64)
.|+-|+.++.+|..
T Consensus 12 I~~hDl~~K~k~a~ 25 (88)
T d1tiga_ 12 IEEHDFNTKLRNAR 25 (88)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHH
Confidence 68999999988754
No 6
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.69 E-value=2.6e+02 Score=14.13 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC
Q 035451 35 EEEKALKELRAKAQQKGSFGGS 56 (64)
Q Consensus 35 ee~k~~kel~~ka~~kgpl~~~ 56 (64)
++|.|-+.+-..+....|-++|
T Consensus 53 Aeq~AA~~Al~~L~~~~~~~~~ 74 (76)
T d1x48a1 53 AKQLAAKEAYQKLLKSPPKTAG 74 (76)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHccCCCCcC
Confidence 4444444444445556665443
No 7
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=96 Score=15.60 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.0
Q ss_pred HHHHHHHHhcCC
Q 035451 40 LKELRAKAQQKG 51 (64)
Q Consensus 40 ~kel~~ka~~kg 51 (64)
..+|++-....|
T Consensus 20 V~~LK~~lk~~g 31 (51)
T d1jeqa1 20 VPMLKEACRAYG 31 (51)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 455666666555
No 8
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.14 E-value=89 Score=17.71 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=0.5
Q ss_pred CCCCCCC
Q 035451 1 MSSKQGG 7 (64)
Q Consensus 1 Msgr~GG 7 (64)
||+|.|.
T Consensus 278 MSkrkGn 284 (317)
T d1irxa2 278 MSGSKGN 284 (317)
T ss_dssp ------C
T ss_pred ccCCCCc
Confidence 7777774
No 9
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.08 E-value=3.4e+02 Score=17.23 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 035451 28 ANIQKKKEEEKALKEL 43 (64)
Q Consensus 28 AfkqKqkee~k~~kel 43 (64)
.|+|+|-|+.++..|+
T Consensus 212 ~~~r~q~e~k~~~~e~ 227 (232)
T d2b5ua2 212 QVKQRQDEENRRQQEW 227 (232)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3567766665555554
No 10
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.05 E-value=1.3e+02 Score=15.18 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q 035451 36 EEKALKELRAKAQ 48 (64)
Q Consensus 36 e~k~~kel~~ka~ 48 (64)
++.++.++++...
T Consensus 12 q~~~l~elr~~l~ 24 (75)
T d1olma1 12 QKEALAKFRENVQ 24 (75)
T ss_dssp HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666654
Done!