BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035454
MAKLCGEARRLKDKFLSFQISHVLRNLNSEADAQATLAVGLADGEVAEECVI

High Scoring Gene Products

Symbol, full name Information P value
AT5G51080 protein from Arabidopsis thaliana 7.1e-09
AT3G01410 protein from Arabidopsis thaliana 9.3e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035454
        (52 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2176152 - symbol:AT5G51080 species:3702 "Arabi...   138  7.1e-09   1
TAIR|locus:2096692 - symbol:AT3G01410 species:3702 "Arabi...   118  9.3e-07   1


>TAIR|locus:2176152 [details] [associations]
            symbol:AT5G51080 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=ISS] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0005739 "mitochondrion" evidence=ISM] InterPro:IPR002156
            InterPro:IPR012337 PROSITE:PS50879 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003676 SUPFAM:SSF53098
            Gene3D:3.40.970.10 InterPro:IPR011320 GO:GO:0004523
            InterPro:IPR009027 SUPFAM:SSF55658 eggNOG:COG0328 EMBL:BT005880
            EMBL:AK227408 EMBL:AK317499 IPI:IPI00531391 RefSeq:NP_001032053.1
            RefSeq:NP_199921.2 UniGene:At.29696 ProteinModelPortal:Q84TE0
            PRIDE:Q84TE0 EnsemblPlants:AT5G51080.1 EnsemblPlants:AT5G51080.2
            GeneID:835181 KEGG:ath:AT5G51080 TAIR:At5g51080
            HOGENOM:HOG000040467 InParanoid:Q84TE0 OMA:DEQANMA PhylomeDB:Q84TE0
            ProtClustDB:CLSN2680504 Genevestigator:Q84TE0 Uniprot:Q84TE0
        Length = 322

 Score = 138 (53.6 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 28/46 (60%), Positives = 38/46 (82%)

Query:     1 MAKLCGEARRLKDKFLSFQISHVLRNLNSEADAQATLAVGLADGEV 46
             ++KL  EA++L DK LSF+ISHVLR+LNS+AD QA +A  L++GEV
Sbjct:   274 LSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEV 319


>TAIR|locus:2096692 [details] [associations]
            symbol:AT3G01410 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004518
            "nuclease activity" evidence=ISS] [GO:0004523 "ribonuclease H
            activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0006310 "DNA recombination" evidence=RCA] [GO:0007059
            "chromosome segregation" evidence=RCA] [GO:0007062 "sister
            chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
            evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
            "reciprocal meiotic recombination" evidence=RCA] [GO:0010332
            "response to gamma radiation" evidence=RCA] [GO:0031048 "chromatin
            silencing by small RNA" evidence=RCA] [GO:0032204 "regulation of
            telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
            organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
            double-strand break formation" evidence=RCA] [GO:0043247 "telomere
            maintenance in response to DNA damage" evidence=RCA] [GO:0045132
            "meiotic chromosome segregation" evidence=RCA] [GO:0048451 "petal
            formation" evidence=RCA] [GO:0048453 "sepal formation"
            evidence=RCA] InterPro:IPR002156 InterPro:IPR012337 PROSITE:PS50879
            EMBL:CP002686 GO:GO:0003676 SUPFAM:SSF53098 Gene3D:3.40.970.10
            InterPro:IPR011320 GO:GO:0004523 IPI:IPI00539005
            RefSeq:NP_001078087.1 RefSeq:NP_186790.2 UniGene:At.43322
            ProteinModelPortal:F4JEB4 SMR:F4JEB4 PRIDE:F4JEB4
            EnsemblPlants:AT3G01410.1 EnsemblPlants:AT3G01410.2 GeneID:821319
            KEGG:ath:AT3G01410 OMA:WRARSDN Uniprot:F4JEB4
        Length = 294

 Score = 118 (46.6 bits), Expect = 9.3e-07, P = 9.3e-07
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query:     1 MAKLCGEARRLKDKFLSFQISHVLRNLNSEADAQATLAVGLADGE 45
             MA+LC +A+ L + F +F I H+ R  NSEAD QA  A+ LADG+
Sbjct:   243 MAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQ 287


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       52        52   0.00091  102 3  11 22  0.37    27
                                                     29  0.47    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  389 (42 KB)
  Total size of DFA:  63 KB (2059 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.91u 0.15s 6.06t   Elapsed:  00:00:00
  Total cpu time:  5.91u 0.15s 6.06t   Elapsed:  00:00:00
  Start:  Thu May  9 16:25:55 2013   End:  Thu May  9 16:25:55 2013

Back to top