Query 035454
Match_columns 52
No_of_seqs 100 out of 106
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u3g_D Ribonuclease H, RNAse H 99.2 4.5E-12 1.5E-16 74.1 3.1 44 1-44 96-140 (140)
2 3hst_B Protein RV2228C/MT2287; 99.2 2E-11 6.8E-16 72.0 3.4 41 2-42 94-134 (141)
3 2ehg_A Ribonuclease HI; RNAse 99.0 8E-11 2.7E-15 71.0 2.0 44 2-46 96-139 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 98.6 7.9E-08 2.7E-12 58.6 4.5 40 2-42 109-152 (154)
5 3h08_A RNH (ribonuclease H); R 98.5 8E-08 2.7E-12 57.9 2.9 39 2-41 102-144 (146)
6 3qio_A GAG-POL polyprotein; RN 98.4 1.8E-07 6.2E-12 58.0 4.1 40 2-41 104-147 (150)
7 1jl1_A Ribonuclease HI; RNAse 98.4 2.6E-07 8.8E-12 56.8 3.2 41 2-43 101-145 (155)
8 2e4l_A Ribonuclease HI, RNAse 98.3 3.2E-07 1.1E-11 56.6 3.2 38 3-41 104-145 (158)
9 1ril_A Ribonuclease H; hydrola 98.3 4.2E-07 1.4E-11 56.7 3.1 40 3-43 107-150 (166)
10 2lsn_A Reverse transcriptase; 98.2 6.3E-07 2.2E-11 56.9 2.5 39 2-40 114-162 (165)
11 3p1g_A Xenotropic murine leuke 97.8 1.7E-05 5.8E-10 50.1 3.9 40 3-42 109-157 (165)
12 1mu2_A HIV-2 RT; HIV-2 reverse 97.6 3.4E-05 1.2E-09 55.1 3.4 38 2-39 514-555 (555)
13 2kq2_A Ribonuclease H-related 97.6 5.5E-06 1.9E-10 50.6 -0.7 26 17-42 109-138 (147)
14 2zd1_A Reverse transcriptase/r 97.3 6.1E-05 2.1E-09 53.8 1.5 37 2-38 517-557 (557)
15 1otr_A Protein CUE2; protein-p 33.5 3.5 0.00012 21.7 -1.6 36 6-41 6-44 (49)
16 3kys_B YAP65, 65 kDa YES-assoc 26.8 42 0.0014 21.0 2.3 30 15-44 3-32 (125)
17 2lqo_A Putative glutaredoxin R 25.6 53 0.0018 18.1 2.4 30 3-33 15-44 (92)
18 1wgl_A TOLL-interacting protei 24.6 23 0.00078 18.9 0.7 38 6-43 11-51 (59)
No 1
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.23 E-value=4.5e-12 Score=74.13 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=39.7
Q ss_pred ChHHHHHHHHH-hhcccceeEeeecCCCChHHHHHHhHhhcccCc
Q 035454 1 MAKLCGEARRL-KDKFLSFQISHVLRNLNSEADAQATLAVGLADG 44 (52)
Q Consensus 1 m~~L~~~a~~L-~~~F~~f~i~HVpRE~N~~AD~LAN~A~dl~~g 44 (52)
|.+++.++++| +.+|..++|.||||+.|..||+||++|++.+.|
T Consensus 96 l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~~~ 140 (140)
T 3u3g_D 96 LKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDKALS 140 (140)
T ss_dssp GHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHhccC
Confidence 35688899999 999999999999999999999999999987653
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.15 E-value=2e-11 Score=72.01 Aligned_cols=41 Identities=32% Similarity=0.268 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhhcccceeEeeecCCCChHHHHHHhHhhccc
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLRNLNSEADAQATLAVGLA 42 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpRE~N~~AD~LAN~A~dl~ 42 (52)
.+++.++++|+.+|..+++.||||+.|..||+||++|++.+
T Consensus 94 ~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 94 LKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAA 134 (141)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999865
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.02 E-value=8e-11 Score=71.04 Aligned_cols=44 Identities=30% Similarity=0.262 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhcccceeEeeecCCCChHHHHHHhHhhcccCcch
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLRNLNSEADAQATLAVGLADGEV 46 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpRE~N~~AD~LAN~A~dl~~g~~ 46 (52)
.+|++++++|+++| ++++.||||+.|..||+||+.|++...+..
T Consensus 96 ~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~~~~ 139 (149)
T 2ehg_A 96 IPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVRRGK 139 (149)
T ss_dssp HHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhccCc
Confidence 57899999999999 599999999999999999999998775543
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=98.55 E-value=7.9e-08 Score=58.62 Aligned_cols=40 Identities=25% Similarity=0.106 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhcccceeEeeecCC----CChHHHHHHhHhhccc
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLRN----LNSEADAQATLAVGLA 42 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpRE----~N~~AD~LAN~A~dl~ 42 (52)
.+|++++.+|+.+|. ++|.||||. .|..||+||++|++.+
T Consensus 109 ~~l~~~i~~l~~~~~-v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 109 KEDFVALERLTQGMD-IQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCc-eEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 468999999999986 999999985 5999999999999876
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=98.47 E-value=8e-08 Score=57.89 Aligned_cols=39 Identities=28% Similarity=0.229 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhcccceeEeeec----CCCChHHHHHHhHhhcc
Q 035454 2 AKLCGEARRLKDKFLSFQISHVL----RNLNSEADAQATLAVGL 41 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVp----RE~N~~AD~LAN~A~dl 41 (52)
.+|+++..+++.+|. +++.||| |+.|.+||+||++|++.
T Consensus 102 ~~l~~~~~~~~~~~~-v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 102 IDLWQEILKLTTLHR-VTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHHHHHHHHSE-EEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-eEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 468999999999885 9999999 99999999999999875
No 6
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=98.44 E-value=1.8e-07 Score=57.96 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhhcccceeEeeecCCC----ChHHHHHHhHhhcc
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLRNL----NSEADAQATLAVGL 41 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpRE~----N~~AD~LAN~A~dl 41 (52)
.+|+++..+++.++..+++.|||++. |.+||+||++|++.
T Consensus 104 ~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 104 VDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 35788887777789999999999998 99999999999875
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=98.36 E-value=2.6e-07 Score=56.79 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhcccceeEeeec----CCCChHHHHHHhHhhcccC
Q 035454 2 AKLCGEARRLKDKFLSFQISHVL----RNLNSEADAQATLAVGLAD 43 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVp----RE~N~~AD~LAN~A~dl~~ 43 (52)
.+|+++..+|+..+ .++|.||| |+.|..||+||+.|++.+.
T Consensus 101 ~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 101 VDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp HHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 36888899998876 79999999 9999999999999998653
No 8
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=98.33 E-value=3.2e-07 Score=56.61 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcccceeEeeec----CCCChHHHHHHhHhhcc
Q 035454 3 KLCGEARRLKDKFLSFQISHVL----RNLNSEADAQATLAVGL 41 (52)
Q Consensus 3 ~L~~~a~~L~~~F~~f~i~HVp----RE~N~~AD~LAN~A~dl 41 (52)
+|+++..+|+.++ .++|.||| |+.|..||+||++|++.
T Consensus 104 ~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 104 DLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 6888899999886 69999999 99999999999999987
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=98.29 E-value=4.2e-07 Score=56.73 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhcccceeEeeec----CCCChHHHHHHhHhhcccC
Q 035454 3 KLCGEARRLKDKFLSFQISHVL----RNLNSEADAQATLAVGLAD 43 (52)
Q Consensus 3 ~L~~~a~~L~~~F~~f~i~HVp----RE~N~~AD~LAN~A~dl~~ 43 (52)
.|+++..+|+.++ .++|.||| |+.|..||+||++|++...
T Consensus 107 ~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 107 DLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 5888999999887 79999999 9999999999999998764
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.20 E-value=6.3e-07 Score=56.88 Aligned_cols=39 Identities=18% Similarity=-0.047 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhcccceeEeeec----------CCCChHHHHHHhHhhc
Q 035454 2 AKLCGEARRLKDKFLSFQISHVL----------RNLNSEADAQATLAVG 40 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVp----------RE~N~~AD~LAN~A~d 40 (52)
.+|+++..+++..+..+++.||+ |+.|.+||+|||+|..
T Consensus 114 ~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 114 ISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 36889999999889999999998 6779999999999864
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=97.82 E-value=1.7e-05 Score=50.06 Aligned_cols=40 Identities=20% Similarity=-0.085 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcccceeEeeecCCC---------ChHHHHHHhHhhccc
Q 035454 3 KLCGEARRLKDKFLSFQISHVLRNL---------NSEADAQATLAVGLA 42 (52)
Q Consensus 3 ~L~~~a~~L~~~F~~f~i~HVpRE~---------N~~AD~LAN~A~dl~ 42 (52)
.|+++....+.++..+++.|||+.. |.+||+||++|+..+
T Consensus 109 dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 109 NEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 4566664445567899999999987 899999999998765
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=97.64 E-value=3.4e-05 Score=55.13 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhcccceeEeeecC----CCChHHHHHHhHhh
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLR----NLNSEADAQATLAV 39 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpR----E~N~~AD~LAN~A~ 39 (52)
.+++++..+++.++..+.+.|||+ +.|.+||+||++|+
T Consensus 514 ~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 514 SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 367788888877788999999999 56999999999985
No 13
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.62 E-value=5.5e-06 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.2
Q ss_pred ceeEeeec----CCCChHHHHHHhHhhccc
Q 035454 17 SFQISHVL----RNLNSEADAQATLAVGLA 42 (52)
Q Consensus 17 ~f~i~HVp----RE~N~~AD~LAN~A~dl~ 42 (52)
.+++.||| |+.|.+||+||++|++..
T Consensus 109 ~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 109 IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 68999999 678999999999999865
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=97.33 E-value=6.1e-05 Score=53.82 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhcccceeEeeecCC----CChHHHHHHhHh
Q 035454 2 AKLCGEARRLKDKFLSFQISHVLRN----LNSEADAQATLA 38 (52)
Q Consensus 2 ~~L~~~a~~L~~~F~~f~i~HVpRE----~N~~AD~LAN~A 38 (52)
.+|+++..+++.++..+.+.||||. .|.+||+||++|
T Consensus 517 ~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 517 SELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp SHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 3677777766666778999999995 599999999986
No 15
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=33.50 E-value=3.5 Score=21.72 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=27.3
Q ss_pred HHHHHHhhccc---ceeEeeecCCCChHHHHHHhHhhcc
Q 035454 6 GEARRLKDKFL---SFQISHVLRNLNSEADAQATLAVGL 41 (52)
Q Consensus 6 ~~a~~L~~~F~---~f~i~HVpRE~N~~AD~LAN~A~dl 41 (52)
.+++.|.+-|+ .+.|.|+++..|-.-|+-.+.-+..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 56778888888 5678999999887777766665554
No 16
>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_B
Probab=26.77 E-value=42 Score=20.96 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccceeEeeecCCCChHHHHHHhHhhcccCc
Q 035454 15 FLSFQISHVLRNLNSEADAQATLAVGLADG 44 (52)
Q Consensus 15 F~~f~i~HVpRE~N~~AD~LAN~A~dl~~g 44 (52)
+.+=+|.||.++.+++-|+|=|-+++-...
T Consensus 3 ~~g~qivhvr~Ds~t~LeaLFn~vmnP~~a 32 (125)
T 3kys_B 3 MAGHQIVHVRGDSETDLEALFNAVMNPKTA 32 (125)
T ss_dssp -CCEEEEEECTTHHHHHHHHHHHHHSGGGC
T ss_pred CCCCceEEecccchHHHHHHHHHhhCCccc
Confidence 345689999999999999999999876543
No 17
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=25.63 E-value=53 Score=18.07 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcccceeEeeecCCCChHHHH
Q 035454 3 KLCGEARRLKDKFLSFQISHVLRNLNSEADA 33 (52)
Q Consensus 3 ~L~~~a~~L~~~F~~f~i~HVpRE~N~~AD~ 33 (52)
|.|.+||+++++. .+.+..+.=+.|..|-+
T Consensus 15 p~C~~aK~~L~~~-gi~y~~idi~~d~~~~~ 44 (92)
T 2lqo_A 15 GYCLRLKTALTAN-RIAYDEVDIEHNRAAAE 44 (92)
T ss_dssp SSHHHHHHHHHHT-TCCCEEEETTTCHHHHH
T ss_pred HhHHHHHHHHHhc-CCceEEEEcCCCHHHHH
Confidence 5799999999875 46666666666665543
No 18
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.60 E-value=23 Score=18.88 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHHhhcccce---eEeeecCCCChHHHHHHhHhhcccC
Q 035454 6 GEARRLKDKFLSF---QISHVLRNLNSEADAQATLAVGLAD 43 (52)
Q Consensus 6 ~~a~~L~~~F~~f---~i~HVpRE~N~~AD~LAN~A~dl~~ 43 (52)
+.+..|.+-|+++ .|++|.+..|-.-|.-.|.=+.+..
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~ 51 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGE 51 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcC
Confidence 3456677778754 5899999999888877776555544
Done!