Query 035456
Match_columns 58
No_of_seqs 106 out of 645
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:25:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b75_A Protein (50S ribosomal 16.1 18 0.00061 20.6 -1.1 9 43-51 24-32 (94)
2 2q0o_C Probable transcriptiona 11.8 94 0.0032 18.9 1.3 19 30-48 83-101 (107)
3 1wfw_A Kalirin-9A; SH3 domain, 11.3 40 0.0014 19.4 -0.5 7 43-49 58-64 (74)
4 2hjd_A Quorum-sensing antiacti 10.1 1.3E+02 0.0044 18.1 1.5 18 31-48 82-99 (102)
5 1rfy_A TRAM protein;, transcri 10.0 1.3E+02 0.0044 18.1 1.5 18 31-48 82-99 (102)
6 1oed_C Acetylcholine receptor 7.0 5.1E+02 0.018 17.0 3.6 27 11-42 18-44 (260)
7 1oed_B Acetylcholine receptor 6.6 5.9E+02 0.02 16.6 3.8 28 10-42 17-44 (250)
8 2ki9_A Cannabinoid receptor 2; 6.4 1.6E+02 0.0056 12.8 0.6 21 32-52 7-27 (33)
9 4dgl_A Casein kinase II subuni 6.3 75 0.0026 21.2 -0.8 14 44-57 78-91 (215)
10 1qf8_A Casein kinase II; casei 5.7 85 0.0029 20.3 -0.8 13 45-57 79-91 (182)
No 1
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=16.08 E-value=18 Score=20.62 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=6.7
Q ss_pred Hhhhhhhhh
Q 035456 43 GYIPGIIYA 51 (58)
Q Consensus 43 g~iPg~IhA 51 (58)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 678888874
No 2
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=11.81 E-value=94 Score=18.89 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHhhhhh
Q 035456 30 KVEFWICLLLTIFGYIPGI 48 (58)
Q Consensus 30 ~~~~~inllLtllg~iPg~ 48 (58)
..+.-+|-++-.|||+|-+
T Consensus 83 AQq~~lstLid~LGyvPkV 101 (107)
T 2q0o_C 83 AQQEELSDILDALGFVPDV 101 (107)
T ss_dssp HHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhcCCCCC
Confidence 3567899999999999964
No 3
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=11.28 E-value=40 Score=19.37 Aligned_cols=7 Identities=57% Similarity=1.436 Sum_probs=5.6
Q ss_pred Hhhhhhh
Q 035456 43 GYIPGII 49 (58)
Q Consensus 43 g~iPg~I 49 (58)
||+||.+
T Consensus 58 gWvPG~v 64 (74)
T 1wfw_A 58 GWVPGSI 64 (74)
T ss_dssp EEEEGGG
T ss_pred CcccccE
Confidence 6888876
No 4
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=10.13 E-value=1.3e+02 Score=18.13 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHhhhhh
Q 035456 31 VEFWICLLLTIFGYIPGI 48 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ 48 (58)
...-+|-++-++||+|-+
T Consensus 82 Qq~~lstli~~LGyvP~v 99 (102)
T 2hjd_A 82 QMSAVNTLVGLLGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 456789999999999964
No 5
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=10.04 E-value=1.3e+02 Score=18.11 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHhhhhh
Q 035456 31 VEFWICLLLTIFGYIPGI 48 (58)
Q Consensus 31 ~~~~inllLtllg~iPg~ 48 (58)
...-+|-++-++||+|-+
T Consensus 82 Qq~~lstli~~LGyvP~v 99 (102)
T 1rfy_A 82 QMSALNTLISILGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHHTSCCC-
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 456789999999999964
No 6
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=7.03 E-value=5.1e+02 Score=17.04 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=14.6
Q ss_pred HHHHHHhhchhHHHhHhccchhHHHHHHHHHH
Q 035456 11 DIILAIILPPLGVFLKFGCKVEFWICLLLTIF 42 (58)
Q Consensus 11 ~~ilai~lPPlaV~l~~G~~~~~~inllLtll 42 (58)
+.++.+.+||= .|-...+-++.+|++.
T Consensus 18 ls~~~F~Lp~~-----~gekv~l~it~lLs~t 44 (260)
T 1oed_C 18 LASLAFYLPAE-----SGEKMSTAISVLLAQA 44 (260)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHH
T ss_pred HHHHHeeeCCC-----CCCeEeehHHHHHHHH
Confidence 44556667762 3444555566666443
No 7
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=6.56 E-value=5.9e+02 Score=16.63 Aligned_cols=28 Identities=39% Similarity=0.479 Sum_probs=14.2
Q ss_pred HHHHHHHhhchhHHHhHhccchhHHHHHHHHHH
Q 035456 10 IDIILAIILPPLGVFLKFGCKVEFWICLLLTIF 42 (58)
Q Consensus 10 ~~~ilai~lPPlaV~l~~G~~~~~~inllLtll 42 (58)
.+-++.+.+||= .|-...+-++.+|++.
T Consensus 17 ~ls~~~F~Lp~d-----sgerv~l~it~lLs~t 44 (250)
T 1oed_B 17 ILAILVFYLPPD-----AGEKMSLSISALLAVT 44 (250)
T ss_dssp HHHHHHHHHHHH-----CGGGHHHHHHHHHHHH
T ss_pred HHHHHHheeCCC-----CCCeEEehhhHHHHHH
Confidence 344556677772 2434445555555433
No 8
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=6.35 E-value=1.6e+02 Score=12.85 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHhhhhhhhhe
Q 035456 32 EFWICLLLTIFGYIPGIIYAV 52 (58)
Q Consensus 32 ~~~inllLtllg~iPg~IhA~ 52 (58)
-..+-+...++.|.|-.+..+
T Consensus 7 ~l~~vv~~F~icW~P~~i~~~ 27 (33)
T 2ki9_A 7 TLGLVLAVLLICWFPVLALMA 27 (33)
T ss_dssp HHHHHHHHHTTTSSHHHHHHT
T ss_pred hHHHHHHHHHHHHhHHHHHHH
Confidence 344455556777888655443
No 9
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=6.33 E-value=75 Score=21.23 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=10.4
Q ss_pred hhhhhhhheeeeec
Q 035456 44 YIPGIIYAVYAITK 57 (58)
Q Consensus 44 ~iPg~IhA~yii~~ 57 (58)
-+=|+|||=|++.+
T Consensus 78 ~LYGLIHARYIlT~ 91 (215)
T 4dgl_A 78 MLYGLIHARYILTN 91 (215)
T ss_dssp HHHHHHHHHHTTSH
T ss_pred HHhhhhhHhheecH
Confidence 35589999888753
No 10
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=5.74 E-value=85 Score=20.32 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=9.7
Q ss_pred hhhhhhheeeeec
Q 035456 45 IPGIIYAVYAITK 57 (58)
Q Consensus 45 iPg~IhA~yii~~ 57 (58)
+=|+|||=|++.+
T Consensus 79 LYGLIHaRyIlT~ 91 (182)
T 1qf8_A 79 LYGLIHARYILTN 91 (182)
T ss_dssp HHHHHHHHHTTSH
T ss_pred HhchhhhhhcccH
Confidence 5588999887653
Done!