Query 035456
Match_columns 58
No_of_seqs 106 out of 645
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 04:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dfup_ b.53.1.1 (P:) Ribosoma 22.6 4.4 0.00032 22.0 -1.3 9 43-51 24-32 (94)
2 d1oedc_ f.36.1.1 (C:) Acetylch 13.8 1.1E+02 0.0077 17.5 3.6 28 11-43 18-45 (260)
3 d1rfya_ a.2.13.1 (A:) Transcri 13.1 32 0.0023 18.9 0.9 13 34-46 76-88 (89)
4 d1lnsa1 a.40.2.1 (A:1-145) X-P 9.8 80 0.0058 18.3 2.1 21 28-48 68-88 (145)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 9.5 97 0.0071 13.8 2.2 18 11-28 16-33 (33)
6 d2iuba2 f.17.3.1 (A:286-349) M 9.4 86 0.0062 15.0 1.8 23 6-28 5-27 (64)
7 d1oeda_ f.36.1.1 (A:) Acetylch 7.0 2.2E+02 0.016 15.9 3.8 27 11-42 18-44 (227)
8 d1feua_ b.53.1.1 (A:) Ribosoma 7.0 25 0.0018 20.8 -1.3 10 42-51 21-30 (185)
9 d2zjrs1 b.53.1.1 (S:1-175) Rib 6.9 25 0.0018 20.6 -1.3 8 43-50 17-24 (175)
10 d1oedb_ f.36.1.1 (B:) Acetylch 6.9 2.3E+02 0.017 15.9 3.6 31 10-45 17-47 (250)
No 1
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=22.59 E-value=4.4 Score=21.95 Aligned_cols=9 Identities=44% Similarity=0.877 Sum_probs=7.0
Q ss_pred Hhhhhhhhh
Q 035456 43 GYIPGIIYA 51 (58)
Q Consensus 43 g~iPg~IhA 51 (58)
|++||++|.
T Consensus 24 G~vPaViYG 32 (94)
T d1dfup_ 24 NKFPAIIYG 32 (94)
T ss_dssp TEEEEEEEC
T ss_pred CCccEEEEC
Confidence 678888874
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=13.77 E-value=1.1e+02 Score=17.50 Aligned_cols=28 Identities=32% Similarity=0.195 Sum_probs=15.4
Q ss_pred HHHHHHhhchhHHHhHhccchhHHHHHHHHHHH
Q 035456 11 DIILAIILPPLGVFLKFGCKVEFWICLLLTIFG 43 (58)
Q Consensus 11 ~~ilai~lPPlaV~l~~G~~~~~~inllLtllg 43 (58)
+.++++.+||= +|-...+-++++|++..
T Consensus 18 l~~~~f~lp~~-----~~~r~~l~it~lLs~~v 45 (260)
T d1oedc_ 18 LASLAFYLPAE-----SGEKMSTAISVLLAQAV 45 (260)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred HHHHHeeeCCC-----CCCcEEeeHHHHHHHHH
Confidence 44566777773 34444555666665443
No 3
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.12 E-value=32 Score=18.90 Aligned_cols=13 Identities=38% Similarity=0.864 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhh
Q 035456 34 WICLLLTIFGYIP 46 (58)
Q Consensus 34 ~inllLtllg~iP 46 (58)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 5678888888887
No 4
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=9.84 E-value=80 Score=18.26 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=18.7
Q ss_pred ccchhHHHHHHHHHHHhhhhh
Q 035456 28 GCKVEFWICLLLTIFGYIPGI 48 (58)
Q Consensus 28 G~~~~~~inllLtllg~iPg~ 48 (58)
..+.+.+-|+.|=++|+.|++
T Consensus 68 ~lt~~vFY~VALQLLgF~~~~ 88 (145)
T d1lnsa1 68 ELDWEIFWNIALQLLDFVPNF 88 (145)
T ss_dssp CCCHHHHHHHHHHHTTCCBTT
T ss_pred cCCHHHHHHHHHHHcCCcccc
Confidence 368899999999999999885
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=9.54 E-value=97 Score=13.81 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=9.0
Q ss_pred HHHHHHhhchhHHHhHhc
Q 035456 11 DIILAIILPPLGVFLKFG 28 (58)
Q Consensus 11 ~~ilai~lPPlaV~l~~G 28 (58)
+.|+.+-+--+|||+.+|
T Consensus 16 l~ilvfw~gv~avf~arg 33 (33)
T d1xmec1 16 LTILVFWLGVYAVFFARG 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 334444455555555544
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.35 E-value=86 Score=14.96 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhchhHHHhHhc
Q 035456 6 TATCIDIILAIILPPLGVFLKFG 28 (58)
Q Consensus 6 ~~~~~~~ilai~lPPlaV~l~~G 28 (58)
.-+.+.++-++++||-.+.--.|
T Consensus 5 ~mk~lT~it~iflP~t~i~gifG 27 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYG 27 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34567778888999877644334
No 7
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.04 E-value=2.2e+02 Score=15.92 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHHhhchhHHHhHhccchhHHHHHHHHHH
Q 035456 11 DIILAIILPPLGVFLKFGCKVEFWICLLLTIF 42 (58)
Q Consensus 11 ~~ilai~lPPlaV~l~~G~~~~~~inllLtll 42 (58)
+-++.+.+||=+ |-...+-++.+|++.
T Consensus 18 ls~~~F~lp~~s-----~eRi~l~it~lL~~~ 44 (227)
T d1oeda_ 18 LTGLVFYLPTDS-----GEKMTLSISVLLSLT 44 (227)
T ss_dssp HHHHHHHHHHHC-----GGGHHHHHHHHHHHH
T ss_pred HHHHHheecCCC-----CccEEeeHHHHHHHH
Confidence 445566777632 434455566666544
No 8
>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}
Probab=6.99 E-value=25 Score=20.79 Aligned_cols=10 Identities=40% Similarity=1.065 Sum_probs=7.9
Q ss_pred HHhhhhhhhh
Q 035456 42 FGYIPGIIYA 51 (58)
Q Consensus 42 lg~iPg~IhA 51 (58)
-|.+||++|.
T Consensus 21 ~G~VPaViYG 30 (185)
T d1feua_ 21 AGKLPGLMYN 30 (185)
T ss_dssp TTEEEEEEEC
T ss_pred CCCceEEEEC
Confidence 4789998874
No 9
>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.93 E-value=25 Score=20.61 Aligned_cols=8 Identities=25% Similarity=0.629 Sum_probs=0.0
Q ss_pred Hhhhhhhh
Q 035456 43 GYIPGIIY 50 (58)
Q Consensus 43 g~iPg~Ih 50 (58)
|.+||++|
T Consensus 17 G~VPaViY 24 (175)
T d2zjrs1 17 SMIAAVAY 24 (175)
T ss_dssp SCCCEEEE
T ss_pred CCCCEEEE
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.89 E-value=2.3e+02 Score=15.93 Aligned_cols=31 Identities=35% Similarity=0.531 Sum_probs=0.0
Q ss_pred HHHHHHHhhchhHHHhHhccchhHHHHHHHHHHHhh
Q 035456 10 IDIILAIILPPLGVFLKFGCKVEFWICLLLTIFGYI 45 (58)
Q Consensus 10 ~~~ilai~lPPlaV~l~~G~~~~~~inllLtllg~i 45 (58)
.+.++.+++|| .+|-...+-++.+|++..+.
T Consensus 17 ~l~~~~f~~p~-----~~~er~~l~it~lL~~~~~~ 47 (250)
T d1oedb_ 17 ILAILVFYLPP-----DAGEKMSLSISALLAVTVFL 47 (250)
T ss_dssp HHHHHHHHHHH-----HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHheecC-----CCCCcEEeeHHHHHHHHHHH
Done!