Query 035457
Match_columns 59
No_of_seqs 107 out of 327
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbd_B Rabphilin-3A; G protein 56.6 3.1 0.00011 25.8 0.6 16 18-33 100-117 (134)
2 2zet_C Melanophilin; complex, 49.6 4.7 0.00016 25.6 0.6 16 18-33 110-127 (153)
3 1loi_A Cyclic 3',5'-AMP specif 24.3 15 0.00051 17.2 -0.1 10 11-20 3-12 (26)
4 1tp9_A Peroxiredoxin, PRX D (t 24.1 60 0.0021 18.8 2.6 20 15-34 47-72 (162)
5 1abz_A Alpha-T-alpha, ATA; de 20.7 67 0.0023 16.2 2.0 20 21-40 8-27 (40)
6 3dd7_B PHD, prevent HOST death 15.2 60 0.002 14.8 0.9 9 23-31 15-23 (23)
7 1hyk_A Agouti related protein; 14.7 5.5 0.00019 21.3 -3.2 9 15-23 15-23 (46)
8 2w6a_A ARF GTPase-activating p 14.7 73 0.0025 17.8 1.3 10 22-31 12-21 (63)
9 1y7j_A Agouti signaling protei 14.6 5.5 0.00019 21.8 -3.3 9 15-23 28-36 (53)
10 3gkn_A Bacterioferritin comigr 14.2 1.3E+02 0.0043 16.9 2.4 18 14-31 46-68 (163)
No 1
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.62 E-value=3.1 Score=25.83 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHh--CC
Q 035457 18 SFALCQEYRELKSR--GW 33 (59)
Q Consensus 18 ~CalcQe~RElk~r--g~ 33 (59)
.|.+||+.|||+.. .|
T Consensus 100 ~C~vC~k~rel~~kSG~W 117 (134)
T 1zbd_B 100 LCKICLEQREVWKRSGAW 117 (134)
T ss_dssp EEHHHHHHHHHHHHTSHH
T ss_pred echhhHHHHHHHHhhhHH
Confidence 48899999999888 46
No 2
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=49.62 E-value=4.7 Score=25.57 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHh--CC
Q 035457 18 SFALCQEYRELKSR--GW 33 (59)
Q Consensus 18 ~CalcQe~RElk~r--g~ 33 (59)
.|.+||+.|||+.. .|
T Consensus 110 ~C~vC~k~rel~~kSGeW 127 (153)
T 2zet_C 110 LCDPCHLARVVKIGSLEW 127 (153)
T ss_dssp EEHHHHHHHHHHHHHCHH
T ss_pred eeHHHHHHHHHHHhccHH
Confidence 47799999999888 46
No 3
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=24.30 E-value=15 Score=17.22 Aligned_cols=10 Identities=60% Similarity=1.288 Sum_probs=7.1
Q ss_pred HHHHchhHHH
Q 035457 11 LVHFFCESFA 20 (59)
Q Consensus 11 ~~~~~C~~Ca 20 (59)
++.+||..|+
T Consensus 3 lvdffcetcs 12 (26)
T 1loi_A 3 LVDFFCETCS 12 (26)
T ss_dssp HHHHHHHTSS
T ss_pred hHHHHHHhcC
Confidence 5667887775
No 4
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=24.13 E-value=60 Score=18.81 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=10.8
Q ss_pred chhHHH------HHHHHHHHHHhCCC
Q 035457 15 FCESFA------LCQEYRELKSRGWH 34 (59)
Q Consensus 15 ~C~~Ca------lcQe~RElk~rg~~ 34 (59)
||+.|. +-+.|+|++.+|..
T Consensus 47 ~c~~C~~~e~~~l~~~~~~~~~~~v~ 72 (162)
T 1tp9_A 47 FTPTCSLKHVPGFIEKAGELKSKGVT 72 (162)
T ss_dssp TCHHHHHTHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 566666 33445555555554
No 5
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=20.65 E-value=67 Score=16.22 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCcchhhh
Q 035457 21 LCQEYRELKSRGWHGNLEKQ 40 (59)
Q Consensus 21 lcQe~RElk~rg~~~n~~~~ 40 (59)
.=||..-|..||-+.|.+-.
T Consensus 8 veqelqaleargtdsnaelr 27 (40)
T 1abz_A 8 VEQELQALEARGTDSNAELR 27 (40)
T ss_dssp HHHHHHHHHHTCSSCSSHHH
T ss_pred HHHHHHHHHHcCCCchHHHH
Confidence 35888889999999997643
No 6
>3dd7_B PHD, prevent HOST death protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1}
Probab=15.24 E-value=60 Score=14.75 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=5.7
Q ss_pred HHHHHHHHh...
Q 035457 23 QEYRELKSR... 31 (59)
Q Consensus 23 Qe~RElk~r... 31 (59)
++++||..|
T Consensus 15 ~t~~~L~dR... 23 (23)
T 3dd7_B 15 STNKEMVNRxxx 26 (26)
T ss_pred HHHHHHhcC...
Confidence 466777654
No 7
>1hyk_A Agouti related protein; cysteine rich, disulfide bond, ICK, inhibitor cystine knot, melanocortin antagonists, AGRP, endogenous antagonist; NMR {Synthetic} SCOP: g.3.5.1 PDB: 1mr0_A
Probab=14.70 E-value=5.5 Score=21.27 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=4.8
Q ss_pred chhHHHHHH
Q 035457 15 FCESFALCQ 23 (59)
Q Consensus 15 ~C~~CalcQ 23 (59)
||.+||+||
T Consensus 15 CCdpCA~C~ 23 (46)
T 1hyk_A 15 CCDPCATCY 23 (46)
T ss_dssp BSSTTCEEE
T ss_pred CcCccchhh
Confidence 455555543
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=14.67 E-value=73 Score=17.77 Aligned_cols=10 Identities=60% Similarity=0.690 Sum_probs=8.4
Q ss_pred HHHHHHHHHh
Q 035457 22 CQEYRELKSR 31 (59)
Q Consensus 22 cQe~RElk~r 31 (59)
.|||-|+|+-
T Consensus 12 ~qeylevK~A 21 (63)
T 2w6a_A 12 LQEYLELKKA 21 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5999999876
No 9
>1y7j_A Agouti signaling protein; melanocortin, inhibitor, cystine knot, GPCR, endogenous antagonist, inverse agonist; NMR {Synthetic} PDB: 1y7k_A 2kza_A 2l1j_A
Probab=14.63 E-value=5.5 Score=21.83 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.4
Q ss_pred chhHHHHHH
Q 035457 15 FCESFALCQ 23 (59)
Q Consensus 15 ~C~~CalcQ 23 (59)
||.+||+||
T Consensus 28 CCdpCA~C~ 36 (53)
T 1y7j_A 28 CCDPCASCY 36 (53)
T ss_dssp CSSTTCEEE
T ss_pred ccCccchhh
Confidence 566666654
No 10
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=14.23 E-value=1.3e+02 Score=16.91 Aligned_cols=18 Identities=6% Similarity=-0.156 Sum_probs=9.4
Q ss_pred HchhHH-----HHHHHHHHHHHh
Q 035457 14 FFCESF-----ALCQEYRELKSR 31 (59)
Q Consensus 14 ~~C~~C-----alcQe~RElk~r 31 (59)
.||+.| .|-+.+.+++.+
T Consensus 46 ~~c~~C~~~~~~l~~~~~~~~~~ 68 (163)
T 3gkn_A 46 DSTPGATTEGLDFNALLPEFDKA 68 (163)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHC
Confidence 355555 344455566555
Done!