Query 035457
Match_columns 59
No_of_seqs 107 out of 327
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 04:26:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035457.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035457hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjla2 g.39.1.13 (A:111-151) 38.8 7.4 0.00054 18.4 1.5 16 16-31 22-37 (41)
2 d1k1va_ a.37.1.1 (A:) Mafg {Mo 32.6 7 0.00051 19.1 0.8 13 21-33 29-41 (41)
3 d1i5ga_ c.47.1.10 (A:) Trypare 20.9 21 0.0015 19.6 1.5 16 15-30 39-59 (144)
4 d2c9wa2 d.93.1.1 (A:32-134) Su 19.1 33 0.0024 17.8 2.0 21 20-40 4-25 (103)
5 d1wjka_ c.47.1.1 (A:) Thioredo 15.9 22 0.0016 18.6 0.7 18 14-31 22-39 (100)
6 d1zbdb_ g.50.1.1 (B:) Effector 14.8 34 0.0025 18.8 1.4 16 18-33 93-110 (124)
7 d1a79a1 c.52.2.1 (A:83-179) Te 13.5 36 0.0026 18.0 1.3 14 22-35 7-20 (97)
8 d1cnt1_ a.26.1.1 (1:) Ciliary 13.5 58 0.0042 19.4 2.4 16 16-31 146-161 (177)
9 d1r0va2 c.52.2.1 (A:215-305) D 13.3 37 0.0027 18.0 1.3 12 23-34 7-18 (91)
10 d2vb1a1 d.2.1.2 (A:1-129) Lyso 13.2 51 0.0037 18.9 2.0 14 22-35 6-19 (129)
No 1
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=38.80 E-value=7.4 Score=18.41 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHh
Q 035457 16 CESFALCQEYRELKSR 31 (59)
Q Consensus 16 C~~CalcQe~RElk~r 31 (59)
-..|.-||+.+|.+.|
T Consensus 22 a~~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 22 ADLCIDCKTLAEIREK 37 (41)
T ss_dssp CCSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 3468889999998765
No 2
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.55 E-value=7 Score=19.11 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhCC
Q 035457 21 LCQEYRELKSRGW 33 (59)
Q Consensus 21 lcQe~RElk~rg~ 33 (59)
|=|..|.||+||+
T Consensus 29 lKqrRRTLKNRGY 41 (41)
T d1k1va_ 29 LKQRRRTLKNRGY 41 (41)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHhhhcCCC
Confidence 4577888888874
No 3
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}
Probab=20.93 E-value=21 Score=19.59 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=8.2
Q ss_pred chhHH-----HHHHHHHHHHH
Q 035457 15 FCESF-----ALCQEYRELKS 30 (59)
Q Consensus 15 ~C~~C-----alcQe~RElk~ 30 (59)
||++| .|-+-|+|++.
T Consensus 39 WC~pC~~~~p~L~~l~~~~~~ 59 (144)
T d1i5ga_ 39 WCPPSRAFTPQLIDFYKAHAE 59 (144)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCchHhhhhHhHHHHHHHHHh
Confidence 56666 34444555544
No 4
>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.10 E-value=33 Score=17.75 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhCC-Ccchhhh
Q 035457 20 ALCQEYRELKSRGW-HGNLEKQ 40 (59)
Q Consensus 20 alcQe~RElk~rg~-~~n~~~~ 40 (59)
-+.+..+||..-.| +|++.+.
T Consensus 4 ~~~~~~~~l~~~~Wy~g~i~R~ 25 (103)
T d2c9wa2 4 RLAKALRELGQTGWYWGSMTVN 25 (103)
T ss_dssp HHHHHHHHHHHTSCBCTTCCHH
T ss_pred hHHHHHHHHhhCCCcCCCCCHH
Confidence 46788899999999 8898654
No 5
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.94 E-value=22 Score=18.62 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=12.5
Q ss_pred HchhHHHHHHHHHHHHHh
Q 035457 14 FFCESFALCQEYRELKSR 31 (59)
Q Consensus 14 ~~C~~CalcQe~RElk~r 31 (59)
|.=+.|.+|++.+++-.+
T Consensus 22 ft~~~C~~C~~a~~~L~~ 39 (100)
T d1wjka_ 22 FTKAPCPLCDEAKEVLQP 39 (100)
T ss_dssp EECSSCHHHHHHHHHTST
T ss_pred EECCCCCChHHHHHHHHH
Confidence 344678889988887443
No 6
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.79 E-value=34 Score=18.76 Aligned_cols=16 Identities=38% Similarity=0.779 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHh--CC
Q 035457 18 SFALCQEYRELKSR--GW 33 (59)
Q Consensus 18 ~CalcQe~RElk~r--g~ 33 (59)
.|.+|+.-||++.+ -|
T Consensus 93 ~C~~C~k~re~~~~sg~W 110 (124)
T d1zbdb_ 93 LCKICLEQREVWKRSGAW 110 (124)
T ss_dssp EEHHHHHHHHHHHHTSHH
T ss_pred ECccCcchHHHHHHccCh
Confidence 58899999999888 46
No 7
>d1a79a1 c.52.2.1 (A:83-179) Tetrameric tRNA splicing endonuclease, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.54 E-value=36 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=10.7
Q ss_pred HHHHHHHHHhCCCc
Q 035457 22 CQEYRELKSRGWHG 35 (59)
Q Consensus 22 cQe~RElk~rg~~~ 35 (59)
..-|++|+.|||-.
T Consensus 7 y~Vy~dLr~rG~~v 20 (97)
T d1a79a1 7 YLVYKDLRTRGYIV 20 (97)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred hHHHHHHHHCCCEE
Confidence 35689999998843
No 8
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.51 E-value=58 Score=19.44 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHh
Q 035457 16 CESFALCQEYRELKSR 31 (59)
Q Consensus 16 C~~CalcQe~RElk~r 31 (59)
+.-|.+||||.|+-.|
T Consensus 146 ~~G~~Vlrey~~w~~r 161 (177)
T d1cnt1_ 146 LWGLKVLQELSQWTVR 161 (177)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hcCcchHhHHHHHHHH
Confidence 4568999999998777
No 9
>d1r0va2 c.52.2.1 (A:215-305) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.30 E-value=37 Score=18.00 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=9.9
Q ss_pred HHHHHHHHhCCC
Q 035457 23 QEYRELKSRGWH 34 (59)
Q Consensus 23 Qe~RElk~rg~~ 34 (59)
.-|+.|+.|||-
T Consensus 7 ~vy~~lr~~G~v 18 (91)
T d1r0va2 7 EVYRNLKERGFV 18 (91)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHCCCE
Confidence 468999999983
No 10
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.22 E-value=51 Score=18.90 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCCc
Q 035457 22 CQEYRELKSRGWHG 35 (59)
Q Consensus 22 cQe~RElk~rg~~~ 35 (59)
|...|||+..|.++
T Consensus 6 CeLAr~L~~~g~~~ 19 (129)
T d2vb1a1 6 CELAAAMKRHGLDN 19 (129)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred hHHHHHHHHcCCCc
Confidence 67789999987765
Done!