BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035461
(51 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224117642|ref|XP_002317630.1| predicted protein [Populus trichocarpa]
gi|356531072|ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Glycine max]
gi|356560019|ref|XP_003548293.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Glycine max]
gi|222860695|gb|EEE98242.1| predicted protein [Populus trichocarpa]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
Length = 51
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/51 (100%), Positives = 51/51 (100%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>gi|225466239|ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Vitis vinifera]
gi|297738145|emb|CBI27346.3| unnamed protein product [Vitis vinifera]
Length = 51
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 50/51 (98%), Positives = 50/51 (98%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>gi|449439515|ref|XP_004137531.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
gi|449516854|ref|XP_004165461.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cucumis sativus]
Length = 51
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 50/51 (98%), Positives = 50/51 (98%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>gi|414884443|tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays]
gi|414884444|tpg|DAA60458.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
2, partial [Zea mays]
Length = 100
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 49 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100
>gi|226498516|ref|NP_001151371.1| LOC100285004 [Zea mays]
gi|297720059|ref|NP_001172391.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza sativa Japonica Group]
gi|242048352|ref|XP_002461922.1| hypothetical protein SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|242078439|ref|XP_002443988.1| hypothetical protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|195609858|gb|ACG26759.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195620974|gb|ACG32317.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195645780|gb|ACG42358.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195646246|gb|ACG42591.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|218188380|gb|EEC70807.1| hypothetical protein OsI_02267 [Oryza sativa Indica Group]
gi|222618595|gb|EEE54727.1| hypothetical protein OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa Japonica Group]
gi|255676033|dbj|BAH92949.1| Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/52 (94%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gi|15237533|ref|NP_198917.1| DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana]
gi|9759147|dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana]
gi|15028303|gb|AAK76628.1| unknown protein [Arabidopsis thaliana]
gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis thaliana]
gi|21618239|gb|AAM67289.1| DNA directed RNA polymerase II polypeptide K [Arabidopsis
thaliana]
gi|332007242|gb|AED94625.1| DNA-directed RNA Polymerase II subunit K [Arabidopsis thaliana]
Length = 51
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 48/51 (94%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>gi|388506340|gb|AFK41236.1| unknown [Medicago truncatula]
Length = 51
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDP PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 51
>gi|357451245|ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula]
gi|355484947|gb|AES66150.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula]
Length = 121
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 49/51 (96%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDP PEPVSY+CGDCG+ENTLK GDVIQCR+CGYRILYKKRTRRIVQYEAR
Sbjct: 14 MDPLPEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDP P+P+ Y+CGDCG E L V+QC C Y+ILYKKRT R++QYEAR
Sbjct: 71 MDPPPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEAR 121
>gi|298204818|emb|CBI25651.3| unnamed protein product [Vitis vinifera]
Length = 82
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQ 47
MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKKRTRRIVQ
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQ 47
>gi|357122946|ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/52 (92%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gi|326530542|dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 52
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/52 (92%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>gi|195617852|gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
Length = 52
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/52 (92%), Positives = 49/52 (94%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52
>gi|297805550|ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/52 (88%), Positives = 50/52 (96%), Gaps = 1/52 (1%)
Query: 1 MDP-QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M+P QPEPV+Y+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1 MEPAQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52
>gi|225470123|ref|XP_002264322.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Vitis vinifera]
gi|298204812|emb|CBI25645.3| unnamed protein product [Vitis vinifera]
Length = 51
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/51 (92%), Positives = 47/51 (92%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MD QPEPVSYICGDCG ENTLK GDVIQCRECGY ILYKKRTRRIVQYEAR
Sbjct: 1 MDSQPEPVSYICGDCGQENTLKLGDVIQCRECGYCILYKKRTRRIVQYEAR 51
>gi|116782140|gb|ABK22384.1| unknown [Picea sitchensis]
gi|116790944|gb|ABK25799.1| unknown [Picea sitchensis]
gi|148909877|gb|ABR18025.1| unknown [Picea sitchensis]
gi|224284970|gb|ACN40214.1| unknown [Picea sitchensis]
gi|224286085|gb|ACN40753.1| unknown [Picea sitchensis]
Length = 53
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PEPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>gi|116779038|gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PEPVSYICGDCG EN+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>gi|357164031|ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 48/52 (92%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ PEPVSY+CGDCG ENTLK GDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQSRECGYRILYKKRTRRIVQYEAR 52
>gi|168064913|ref|XP_001784402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664073|gb|EDQ50807.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 56
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/49 (87%), Positives = 47/49 (95%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P PEPV+Y+CGDCG +NTLKPGDVIQCRECGYRILYKKRTRRIVQ+EAR
Sbjct: 8 PPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56
>gi|255573173|ref|XP_002527516.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Ricinus communis]
gi|223533156|gb|EEF34914.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Ricinus communis]
Length = 51
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR
Sbjct: 1 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR 44
>gi|302783643|ref|XP_002973594.1| hypothetical protein SELMODRAFT_173570 [Selaginella
moellendorffii]
gi|300158632|gb|EFJ25254.1| hypothetical protein SELMODRAFT_173570 [Selaginella
moellendorffii]
Length = 67
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/49 (85%), Positives = 46/49 (93%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P EPV+Y+CGDCG +N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 19 PPIEPVTYMCGDCGTDNSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 67
>gi|226497674|ref|NP_001150838.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|195642292|gb|ACG40614.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
gi|414589139|tpg|DAA39710.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide [Zea
mays]
Length = 53
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 48/53 (90%), Gaps = 2/53 (3%)
Query: 1 MDP--QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDP QPEPV+Y+CGDCG ENT+K DV+QCRECG+RILYKKRTRRIVQ+EAR
Sbjct: 1 MDPPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQFEAR 53
>gi|356519311|ref|XP_003528316.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Glycine max]
Length = 47
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/44 (93%), Positives = 41/44 (93%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
MDPQPE SYICGDCGMENTLKP DVIQCRECGYRILYKKRTRR
Sbjct: 1 MDPQPELASYICGDCGMENTLKPSDVIQCRECGYRILYKKRTRR 44
>gi|218196109|gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indica Group]
Length = 87
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/45 (93%), Positives = 43/45 (95%), Gaps = 1/45 (2%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRR 45
>gi|307110996|gb|EFN59231.1| hypothetical protein CHLNCDRAFT_19308 [Chlorella variabilis]
Length = 62
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P V+YICGDCG ENTLKPGDVI+CRECGYRILYKKRT+R+VQYEAR
Sbjct: 15 PVQVAYICGDCGAENTLKPGDVIRCRECGYRILYKKRTKRVVQYEAR 61
>gi|222630231|gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japonica Group]
Length = 50
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/45 (93%), Positives = 43/45 (95%), Gaps = 1/45 (2%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
MDPQ PEPVSY+CGDCG ENTLKPGDVIQCRECGYRILYKKRTRR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRR 45
>gi|384254170|gb|EIE27644.1| hypothetical protein COCSUDRAFT_26843 [Coccomyxa subellipsoidea
C-169]
Length = 60
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 42/44 (95%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y CGDCG ENTLKPGDVI+CRECGYRILYKKRTRR+VQYEAR
Sbjct: 17 VAYTCGDCGHENTLKPGDVIRCRECGYRILYKKRTRRVVQYEAR 60
>gi|298204819|emb|CBI25652.3| unnamed protein product [Vitis vinifera]
Length = 40
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/40 (97%), Positives = 39/40 (97%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40
MDPQPEPVSYICGDCG ENTLKPGDVIQCRECGYRILYKK
Sbjct: 1 MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKK 40
>gi|414589141|tpg|DAA39712.1| TPA: hypothetical protein ZEAMMB73_184842 [Zea mays]
Length = 274
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 2/48 (4%)
Query: 1 MDP--QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
MDP QPEPV+Y+CGDCG ENT+K DV+QCRECG+RILYKKRTRR V
Sbjct: 1 MDPPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRNV 48
>gi|414589140|tpg|DAA39711.1| TPA: hypothetical protein ZEAMMB73_184842 [Zea mays]
Length = 618
Score = 81.3 bits (199), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 2/48 (4%)
Query: 1 MDP--QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
MDP QPEPV+Y+CGDCG ENT+K DV+QCRECG+RILYKKRTRR V
Sbjct: 1 MDPPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRNV 48
>gi|413921117|gb|AFW61049.1| hypothetical protein ZEAMMB73_885271, partial [Zea mays]
Length = 45
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 40/45 (88%), Gaps = 1/45 (2%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
MDPQ PEPVSY+CGDCG ENTLKP DVIQCRE GYRILYKKRT R
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPTDVIQCREWGYRILYKKRTHR 45
>gi|302787695|ref|XP_002975617.1| hypothetical protein SELMODRAFT_103560 [Selaginella
moellendorffii]
gi|300156618|gb|EFJ23246.1| hypothetical protein SELMODRAFT_103560 [Selaginella
moellendorffii]
Length = 67
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P EPV+Y+CGDCG +N+LKPGDVIQCRECGYRILYKKRTRR
Sbjct: 19 PPIEPVTYMCGDCGTDNSLKPGDVIQCRECGYRILYKKRTRR 60
>gi|302840351|ref|XP_002951731.1| hypothetical protein VOLCADRAFT_61695 [Volvox carteri f.
nagariensis]
gi|300262979|gb|EFJ47182.1| hypothetical protein VOLCADRAFT_61695 [Volvox carteri f.
nagariensis]
Length = 58
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICG CG E +LKPGD+IQCRECGYRILYKKRT ++VQ+EAR
Sbjct: 15 VPYICGQCGSEISLKPGDIIQCRECGYRILYKKRTNKVVQFEAR 58
>gi|159468722|ref|XP_001692523.1| subunit f DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
gi|158278236|gb|EDP04001.1| subunit f DNA-directed RNA polymerase [Chlamydomonas reinhardtii]
Length = 58
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICG CG E +LKPGD+IQCRECGYRILYKKRT ++VQ+EAR
Sbjct: 15 VPYICGQCGSEISLKPGDIIQCRECGYRILYKKRTNKVVQFEAR 58
>gi|308800426|ref|XP_003074994.1| Rpc10 RPC10 subunit of RNA polymerases I, II, and III, probable
(IC) [Ostreococcus tauri]
gi|119358854|emb|CAL52265.2| Rpc10 RPC10 subunit of RNA polymerases I, II, and III, probable
(IC) [Ostreococcus tauri]
Length = 56
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y CGDCG E L+PGDVI CRECGYRILYKKRT+++VQ+EAR
Sbjct: 13 VAYNCGDCGSEVLLRPGDVIICRECGYRILYKKRTKQVVQFEAR 56
>gi|145342466|ref|XP_001416203.1| RPC10 subunit of RNA polymerases I, II, and III, probable
[Ostreococcus lucimarinus CCE9901]
gi|144576428|gb|ABO94496.1| RPC10 subunit of RNA polymerases I, II, and III, probable
[Ostreococcus lucimarinus CCE9901]
Length = 56
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 39/44 (88%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y CGDCG E L+PGDVI CRECGYRILYKKRT+++VQ+EAR
Sbjct: 13 VAYNCGDCGSEVLLRPGDVIICRECGYRILYKKRTKQVVQFEAR 56
>gi|299471331|emb|CBN79287.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 68
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 39/44 (88%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CGDCG +N +K D IQCR+CGYRI+YKKRT+R++Q+EAR
Sbjct: 25 VTYLCGDCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRLIQFEAR 68
>gi|384494497|gb|EIE84988.1| hypothetical protein RO3G_09698 [Rhizopus delemar RA 99-880]
gi|384497625|gb|EIE88116.1| hypothetical protein RO3G_12827 [Rhizopus delemar RA 99-880]
Length = 58
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 41/48 (85%)
Query: 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
QP ++Y+C DCG EN LKP + I+C++CG+RI+YKKRT+R+VQ+EAR
Sbjct: 11 QPPAMTYLCADCGAENQLKPREPIRCQDCGHRIMYKKRTKRMVQFEAR 58
>gi|410910832|ref|XP_003968894.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Takifugu rubripes]
Length = 58
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P++YICG+C EN +K D I+CRECGYRILYKKRT+R+V ++AR
Sbjct: 10 PKQQPMAYICGECHTENEIKARDPIRCRECGYRILYKKRTKRLVVFDAR 58
>gi|47229350|emb|CAF99338.1| unnamed protein product [Tetraodon nigroviridis]
Length = 58
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 41/49 (83%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P++YICG+C EN +K D I+CRECGYRILYKKRT+R+V ++AR
Sbjct: 10 PKQQPMAYICGECHTENEIKARDPIRCRECGYRILYKKRTKRLVVFDAR 58
>gi|302696967|ref|XP_003038162.1| hypothetical protein SCHCODRAFT_9862 [Schizophyllum commune H4-8]
gi|300111859|gb|EFJ03260.1| hypothetical protein SCHCODRAFT_9862 [Schizophyllum commune H4-8]
Length = 73
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P E ++Y+C DCG E T+K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 25 PPKEDMAYLCADCGTETTIKAREPIRCRECGHRIMYKKRTKRMVQFEAR 73
>gi|213403580|ref|XP_002172562.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212000609|gb|EEB06269.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 67
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+P + Y+C DCG N+++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 19 PRPATMIYLCADCGAHNSIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 67
>gi|19112480|ref|NP_595688.1| DNA-directed RNA polymerase I, II and III subunit Rpc10
[Schizosaccharomyces pombe 972h-]
gi|3334490|sp|P48011.2|RPAB4_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha
gi|256599726|pdb|3H0G|L Chain L, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599738|pdb|3H0G|X Chain X, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529253|dbj|BAA22807.1| RNA polymarase II subunit Rpb12 [Schizosaccharomyces pombe]
gi|2625015|gb|AAC16896.1| RNA polymerases I, II and III subunit Rpc10 [Schizosaccharomyces
pombe]
gi|5689985|emb|CAB52030.1| DNA-directed RNA polymerase I, II and III subunit Rpc10
[Schizosaccharomyces pombe]
Length = 63
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+P + Y+C DCG NT++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>gi|321466908|gb|EFX77901.1| hypothetical protein DAPPUDRAFT_231106 [Daphnia pulex]
Length = 56
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 42/56 (75%), Gaps = 5/56 (8%)
Query: 1 MDPQPEPVS-----YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MD + EPV YICGDC EN LKP D I+CRECGYRI+YKKRT+R++ ++AR
Sbjct: 1 MDKEGEPVKKQPMVYICGDCHGENELKPRDPIRCRECGYRIMYKKRTKRLIVFDAR 56
>gi|86355514|ref|NP_001034457.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
isoform a [Mus musculus]
gi|26359412|dbj|BAB25485.2| unnamed protein product [Mus musculus]
gi|26359970|dbj|BAB25578.2| unnamed protein product [Mus musculus]
Length = 99
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 51 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 99
>gi|237840341|ref|XP_002369468.1| transcription activator, putative [Toxoplasma gondii ME49]
gi|211967132|gb|EEB02328.1| transcription activator, putative [Toxoplasma gondii ME49]
Length = 104
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Q EPV+YICG+CG + L+P ++CR CG RILYKKR+R+++QYEAR
Sbjct: 55 NSQVEPVTYICGECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQYEAR 104
>gi|148676881|gb|EDL08828.1| mCG145114 [Mus musculus]
Length = 115
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 67 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 115
>gi|398411540|ref|XP_003857108.1| hypothetical protein MYCGRDRAFT_78914 [Zymoseptoria tritici
IPO323]
gi|339476993|gb|EGP92084.1| hypothetical protein MYCGRDRAFT_78914 [Zymoseptoria tritici
IPO323]
Length = 88
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+PV Y+CGDC + +LK GD I+C+ECGYR+LYK+RT R++Q+EAR
Sbjct: 43 KPVHYLCGDCDTKVSLKKGDPIRCKECGYRVLYKERTNRMIQFEAR 88
>gi|8248885|gb|AAB27565.2| metallothionein-I gene transcription activator [Mus sp.]
Length = 105
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 57 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 105
>gi|1050852|gb|AAA80487.1| RNA polymerase small Zn-binding subunit [Schizosaccharomyces
pombe]
gi|2529427|gb|AAC49841.1| Rpc10 [Schizosaccharomyces pombe]
Length = 63
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+P + Y+C DCG NT++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGRRNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>gi|221483155|gb|EEE21479.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Toxoplasma gondii GT1]
gi|221504088|gb|EEE29765.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Toxoplasma gondii VEG]
Length = 104
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Q EPV+YICG+CG + L+P ++CR CG RILYKKR+R+++QYEAR
Sbjct: 55 NSQVEPVTYICGECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQYEAR 104
>gi|417407525|gb|JAA50368.1| Putative dna-directed rna polymerases i ii and iii subunit rpabc4
isoform a, partial [Desmodus rotundus]
Length = 82
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 34 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 82
>gi|297725305|ref|NP_001175016.1| Os07g0105100 [Oryza sativa Japonica Group]
gi|22324456|dbj|BAC10371.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50508985|dbj|BAD31934.1| hypothetical protein [Oryza sativa Japonica Group]
gi|50510148|dbj|BAD31116.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255677442|dbj|BAH93744.1| Os07g0105100 [Oryza sativa Japonica Group]
Length = 65
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
MDPQ P+PVSY+C DCG E LKP DV+QC ECG RIL KKRTR+ + + R
Sbjct: 11 MDPQQPKPVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQGIVVDHR 62
>gi|426241714|ref|XP_004014734.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ovis aries]
Length = 91
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 43 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 91
>gi|453089699|gb|EMF17739.1| metallothionein-I transcription activator [Mycosphaerella
populorum SO2202]
Length = 87
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+PV+Y+CGDC + LK GD I+C+ECGYR+LYK+RT R++Q+EAR
Sbjct: 42 KPVNYLCGDCDTKVILKKGDPIRCKECGYRVLYKERTNRMIQFEAR 87
>gi|392592901|gb|EIW82227.1| hypothetical protein CONPUDRAFT_81756 [Coniophora puteana
RWD-64-598 SS2]
Length = 64
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ E + YIC DCG +N +K + I+CRECG+RI+YKKRT R+VQ+EAR
Sbjct: 16 PRQEAMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTTRMVQFEAR 64
>gi|335301191|ref|XP_003359148.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Sus scrofa]
Length = 58
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D IQCRECGYRI+YKKRT+R V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIQCRECGYRIMYKKRTKRWVGFDAR 58
>gi|328861960|gb|EGG11062.1| hypothetical protein MELLADRAFT_70939 [Melampsora larici-populina
98AG31]
Length = 67
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P P P++Y+C DCG +N +KP + I+C+ECG R++YKKR +R+VQ+EAR
Sbjct: 19 PTPAPITYLCSDCGRDNIIKPREPIRCQECGCRVMYKKRIKRMVQFEAR 67
>gi|393215548|gb|EJD01039.1| hypothetical protein FOMMEDRAFT_141778, partial [Fomitiporia
mediterranea MF3/22]
Length = 65
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 38/46 (82%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
EP+ Y+C DCG N +K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 20 EPIEYLCADCGSPNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 65
>gi|218198951|gb|EEC81378.1| hypothetical protein OsI_24588 [Oryza sativa Indica Group]
Length = 85
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 1 MDPQ-PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
MDPQ P+PVSY+C DCG E LKP DV+QC ECG RIL KKRTR+ ++
Sbjct: 1 MDPQQPKPVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQASRH 49
>gi|348513231|ref|XP_003444146.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Oreochromis niloticus]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|432881568|ref|XP_004073844.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Oryzias latipes]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|221220062|gb|ACM08692.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|350535859|ref|NP_001232686.1| putative DNA directed RNA polymerase II polypeptide K variant 1
[Taeniopygia guttata]
gi|326936521|ref|XP_003214302.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Meleagris gallopavo]
gi|363730993|ref|XP_001234883.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Gallus gallus]
gi|449494508|ref|XP_004175311.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Taeniopygia guttata]
gi|197127661|gb|ACH44159.1| putative DNA directed RNA polymerase II polypeptide K variant 1
[Taeniopygia guttata]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|12858879|dbj|BAB31480.1| unnamed protein product [Mus musculus]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|86355510|ref|NP_075616.2| DNA-directed RNA polymerases I, II, and III subunit RPABC4
isoform b [Mus musculus]
gi|126322146|ref|XP_001369159.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Monodelphis domestica]
gi|291388351|ref|XP_002710759.1| PREDICTED: DNA directed RNA polymerase II polypeptide K
[Oryctolagus cuniculus]
gi|354489645|ref|XP_003506972.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cricetulus griseus]
gi|2842662|sp|Q63871.2|RPAB4_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K; AltName: Full=Metallothionein-I gene
transcription activator; AltName: Full=RPB10alpha
gi|12833421|dbj|BAB22516.1| unnamed protein product [Mus musculus]
gi|20306771|gb|AAH28543.1| Polymerase (RNA) II (DNA directed) polypeptide K [Mus musculus]
gi|148697081|gb|EDL29028.1| mCG1040972 [Mus musculus]
gi|344249731|gb|EGW05835.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Cricetulus griseus]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|4826924|ref|NP_005025.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Homo
sapiens]
gi|83035107|ref|NP_001032712.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Bos
taurus]
gi|109087128|ref|XP_001096949.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Macaca mulatta]
gi|114621109|ref|XP_001151505.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Pan troglodytes]
gi|296227488|ref|XP_002759400.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 1 [Callithrix jacchus]
gi|297284907|ref|XP_002802676.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Macaca mulatta]
gi|297683405|ref|XP_002819375.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pongo abelii]
gi|301756368|ref|XP_002914029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ailuropoda melanoleuca]
gi|311253557|ref|XP_003125601.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 1 [Sus scrofa]
gi|332213982|ref|XP_003256107.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Nomascus leucogenys]
gi|332830920|ref|XP_003311922.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pan troglodytes]
gi|335286261|ref|XP_003355060.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 3 [Sus scrofa]
gi|338728548|ref|XP_003365693.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Equus caballus]
gi|345779142|ref|XP_003431830.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Canis lupus familiaris]
gi|390476085|ref|XP_003735071.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like isoform 2 [Callithrix jacchus]
gi|392341483|ref|XP_003754348.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|392349463|ref|XP_003750385.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|395512212|ref|XP_003760337.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Sarcophilus harrisii]
gi|395818138|ref|XP_003782494.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Otolemur garnettii]
gi|397502201|ref|XP_003821755.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Pan paniscus]
gi|397502203|ref|XP_003821756.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Pan paniscus]
gi|403257212|ref|XP_003921223.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Saimiri boliviensis boliviensis]
gi|403305022|ref|XP_003943075.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Saimiri boliviensis boliviensis]
gi|410987562|ref|XP_004000067.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Felis catus]
gi|426235786|ref|XP_004011861.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Ovis aries]
gi|426360376|ref|XP_004047421.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 1 [Gorilla gorilla gorilla]
gi|426360378|ref|XP_004047422.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4 isoform 2 [Gorilla gorilla gorilla]
gi|1710664|sp|P53803.1|RPAB4_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha; AltName:
Full=DNA-directed RNA polymerase II subunit K; AltName:
Full=RNA polymerase II 7.0 kDa subunit; Short=RPB7.0;
AltName: Full=RPB10alpha
gi|122140756|sp|Q3ZBC0.1|RPAB4_BOVIN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K
gi|717187|emb|CAA87656.1| RNA polymerase II [Homo sapiens]
gi|7981272|emb|CAB91873.1| RPB10alpha [Homo sapiens]
gi|12654013|gb|AAH00806.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Homo
sapiens]
gi|17390349|gb|AAH18157.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Homo
sapiens]
gi|48145857|emb|CAG33151.1| POLR2K [Homo sapiens]
gi|73587155|gb|AAI03451.1| Polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Bos
taurus]
gi|119612204|gb|EAW91798.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, isoform
CRA_a [Homo sapiens]
gi|119612205|gb|EAW91799.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, isoform
CRA_a [Homo sapiens]
gi|123980512|gb|ABM82085.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|123995329|gb|ABM85266.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|149066525|gb|EDM16398.1| rCG59437, isoform CRA_a [Rattus norvegicus]
gi|149066526|gb|EDM16399.1| rCG59437, isoform CRA_a [Rattus norvegicus]
gi|208967090|dbj|BAG73559.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa
[synthetic construct]
gi|296480474|tpg|DAA22589.1| TPA: DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Bos taurus]
gi|296480651|tpg|DAA22766.1| TPA: DNA directed RNA polymerase II polypeptide K-like [Bos
taurus]
gi|355746386|gb|EHH51000.1| hypothetical protein EGM_10312 [Macaca fascicularis]
gi|383413723|gb|AFH30075.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Macaca mulatta]
gi|384943874|gb|AFI35542.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Macaca mulatta]
gi|410206652|gb|JAA00545.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
gi|410258456|gb|JAA17195.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
gi|410331291|gb|JAA34592.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Pan
troglodytes]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|348588321|ref|XP_003479915.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Cavia porcellus]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|312283689|ref|NP_001186035.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Danio
rerio]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|344273302|ref|XP_003408462.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Loxodonta africana]
Length = 58
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|229367088|gb|ACQ58524.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Anoplopoma fimbria]
Length = 58
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|346470287|gb|AEO34988.1| hypothetical protein [Amblyomma maculatum]
Length = 59
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 41/51 (80%), Gaps = 2/51 (3%)
Query: 3 PQP--EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PQP P+ YICG+C EN ++P D I+CRECGYRI+YKKRT+R++ ++AR
Sbjct: 9 PQPVKAPMIYICGECHQENEIRPRDPIRCRECGYRIMYKKRTKRLIVFDAR 59
>gi|395330585|gb|EJF62968.1| hypothetical protein DICSQDRAFT_103385 [Dichomitus squalens
LYAD-421 SS1]
Length = 73
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M Q + +SY+C DCG N ++P + I+CR+CG+RI+YKKRT R+VQ+EAR
Sbjct: 23 MPQQRQEMSYLCADCGASNEIRPREPIRCRQCGHRIMYKKRTTRMVQFEAR 73
>gi|407926564|gb|EKG19531.1| RNA polymerase Rbp10 [Macrophomina phaseolina MS6]
Length = 74
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 38/46 (82%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+PV+Y+CGDC + L+ GD I CRECG+R+LYK+RT R+VQ+EAR
Sbjct: 29 KPVAYLCGDCDAKVVLRRGDQIMCRECGHRVLYKERTNRMVQFEAR 74
>gi|62858105|ref|NP_001016509.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus
(Silurana) tropicalis]
gi|147906621|ref|NP_001085445.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus laevis]
gi|163838621|ref|NP_001106214.1| polymerase (RNA) II (DNA directed) polypeptide K [Xenopus laevis]
gi|49117015|gb|AAH72756.1| Polr2ka protein [Xenopus laevis]
gi|51593702|gb|AAH78622.1| Polr2kb protein [Xenopus laevis]
gi|89266749|emb|CAJ83912.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|89267208|emb|CAJ81412.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|213625560|gb|AAI70863.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
gi|213627179|gb|AAI70861.1| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus
(Silurana) tropicalis]
Length = 58
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|327283842|ref|XP_003226649.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Anolis carolinensis]
Length = 58
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHKENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|401398804|ref|XP_003880407.1| unnamed protein product [Neospora caninum Liverpool]
gi|325114817|emb|CBZ50373.1| unnamed protein product [Neospora caninum Liverpool]
Length = 69
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Q +PV+YICG+CG + L+P ++CR CG RILYKKR+R+++QYEAR
Sbjct: 21 SQVDPVTYICGECGCDVMLQPNAAVRCRSCGSRILYKKRSRKMMQYEAR 69
>gi|225707544|gb|ACO09618.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide
[Osmerus mordax]
Length = 58
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|428671116|gb|EKX72035.1| DNA-directed RNA polymerases I, II, and III 7.7 kD polypeptide,
putative [Babesia equi]
Length = 56
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
EP++YICG+CG + L+P ++CR CG RILYKKR+ R+VQYEAR
Sbjct: 11 EPITYICGECGNDIALQPTAAVRCRNCGSRILYKKRSYRVVQYEAR 56
>gi|389747040|gb|EIM88219.1| DNA-directed RNA polymerase I [Stereum hirsutum FP-91666 SS1]
Length = 67
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 40/51 (78%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M P + + Y+C DCG +N +K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 17 MAPPRQDMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 67
>gi|161077092|ref|NP_001097319.1| Rpb12 [Drosophila melanogaster]
gi|194882899|ref|XP_001975547.1| GG22374 [Drosophila erecta]
gi|195334543|ref|XP_002033937.1| GM20158 [Drosophila sechellia]
gi|195486190|ref|XP_002091399.1| GE12262 [Drosophila yakuba]
gi|195583568|ref|XP_002081589.1| GD25636 [Drosophila simulans]
gi|41617164|tpg|DAA02521.1| TPA_inf: HDC06513 [Drosophila melanogaster]
gi|125660184|gb|ABN49320.1| IP17848p [Drosophila melanogaster]
gi|157400336|gb|ABV53802.1| Rpb12 [Drosophila melanogaster]
gi|190658734|gb|EDV55947.1| GG22374 [Drosophila erecta]
gi|194125907|gb|EDW47950.1| GM20158 [Drosophila sechellia]
gi|194177500|gb|EDW91111.1| GE12262 [Drosophila yakuba]
gi|194193598|gb|EDX07174.1| GD25636 [Drosophila simulans]
Length = 57
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D ++YICG+C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 DNVKTAMTYICGECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|242012601|ref|XP_002427018.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212511263|gb|EEB14280.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 57
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ YICG+C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 13 PMVYICGECRHENEIRPRDPIRCRECGYRIMYKKRTKRVVVFDAR 57
>gi|195024974|ref|XP_001985975.1| GH20797 [Drosophila grimshawi]
gi|195123317|ref|XP_002006154.1| GI20882 [Drosophila mojavensis]
gi|195154096|ref|XP_002017958.1| GL17021 [Drosophila persimilis]
gi|195381935|ref|XP_002049688.1| GJ20617 [Drosophila virilis]
gi|198458378|ref|XP_002138535.1| GA24334 [Drosophila pseudoobscura pseudoobscura]
gi|193901975|gb|EDW00842.1| GH20797 [Drosophila grimshawi]
gi|193911222|gb|EDW10089.1| GI20882 [Drosophila mojavensis]
gi|194113754|gb|EDW35797.1| GL17021 [Drosophila persimilis]
gi|194144485|gb|EDW60881.1| GJ20617 [Drosophila virilis]
gi|198136322|gb|EDY69093.1| GA24334 [Drosophila pseudoobscura pseudoobscura]
Length = 57
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++YICG+C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 13 AMTYICGECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|259481836|tpe|CBF75729.1| TPA: metallothionein-I gene transcription activator
(AFU_orthologue; AFUA_4G11970) [Aspergillus nidulans
FGSC A4]
Length = 75
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CGDC +LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 32 VAYLCGDCNARVSLKRGDQIRCKECGHRVLYKERTKRMVQFEAR 75
>gi|355559300|gb|EHH16028.1| hypothetical protein EGK_11253 [Macaca mulatta]
Length = 58
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++A+
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAQ 58
>gi|241853658|ref|XP_002415907.1| RNA polymerases I, II and III shared polypeptide, putative
[Ixodes scapularis]
gi|215510121|gb|EEC19574.1| RNA polymerases I, II and III shared polypeptide, putative
[Ixodes scapularis]
Length = 59
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ YICG+C EN ++P D I+CRECGYRI+YKKRT+R++ ++AR
Sbjct: 15 PMIYICGECHQENEIRPRDPIRCRECGYRIMYKKRTKRLIVFDAR 59
>gi|152012700|gb|AAI50399.1| Zgc:171795 protein [Danio rerio]
Length = 57
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++A
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDA 57
>gi|225712816|gb|ACO12254.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
gi|290462361|gb|ADD24228.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
Length = 63
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 39/46 (84%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+P+ YICG+C +EN ++ D I+CRECGYRI+YKKRT+R++ ++AR
Sbjct: 18 QPMIYICGECHVENEIRARDAIRCRECGYRIMYKKRTKRLIVFDAR 63
>gi|403183200|gb|EJY57925.1| AAEL017317-PA [Aedes aegypti]
Length = 279
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 36/42 (85%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y+CG+C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 238 YVCGECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 279
>gi|331215401|ref|XP_003320381.1| DNA-directed RNA Polymerase II subunit K [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309299371|gb|EFP75962.1| DNA-directed RNA Polymerase II subunit K [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 67
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 39/45 (86%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P++Y+C DCG +N++KP + I+C+ECG RI+YKKR +R+VQ+EAR
Sbjct: 23 PITYLCADCGKDNSIKPREPIRCQECGCRIMYKKRIKRMVQFEAR 67
>gi|422295088|gb|EKU22387.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Nannochloropsis gaditana CCMP526]
Length = 83
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M + V+Y+CGDCG +N +K D I+CR+C +RI+YK RT+R+VQ+EAR
Sbjct: 33 MARELSGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR 83
>gi|336386264|gb|EGO27410.1| hypothetical protein SERLADRAFT_460779 [Serpula lacrymans var.
lacrymans S7.9]
Length = 68
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P + + YIC DCG +N +K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 20 PPRQDMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 68
>gi|391337615|ref|XP_003743162.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Metaseiulus occidentalis]
Length = 64
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+P P+ YICGDC EN +K D I+CRECGYRI+YK+RT+R + ++AR
Sbjct: 17 KPPPMIYICGDCHHENEMKLSDPIRCRECGYRIMYKRRTKRHMVFDAR 64
>gi|225711990|gb|ACO11841.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Lepeophtheirus salmonis]
Length = 63
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 39/46 (84%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+P+ YICG+C +EN ++ D I+CRECGYRI+YKKRT+R++ ++AR
Sbjct: 18 QPMIYICGECHVENEIRVRDAIRCRECGYRIMYKKRTKRLIVFDAR 63
>gi|15220906|ref|NP_175773.1| DNA directed RNA polymerase-7 subunit [Arabidopsis thaliana]
gi|12324038|gb|AAG51987.1|AC024260_25 RNA polymerase II, putative; 28841-29486 [Arabidopsis thaliana]
gi|332194861|gb|AEE32982.1| DNA directed RNA polymerase-7 subunit [Arabidopsis thaliana]
Length = 61
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 33/41 (80%), Gaps = 1/41 (2%)
Query: 2 DPQPEP-VSYICGDCGMENTLKPGDVIQCRECGYRILYKKR 41
D QPE V Y+CGDCG EN LK GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50
>gi|389584911|dbj|GAB67642.1| transcription activator [Plasmodium cynomolgi strain B]
Length = 58
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D EPV YICG+CG++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 9 DISAEPVVYICGECGIDTVIAPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>gi|221058565|ref|XP_002259928.1| transcription activator [Plasmodium knowlesi strain H]
gi|193810001|emb|CAQ41195.1| transcription activator, putative [Plasmodium knowlesi strain H]
Length = 58
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D EPV YICG+CG++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 9 DISAEPVVYICGECGIDTVIAPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>gi|377837260|ref|XP_003689267.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Mus musculus]
Length = 58
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CREC YRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECRYRIMYKKRTKRLVVFDAR 58
>gi|17539996|ref|NP_501593.1| Protein RPB-12 [Caenorhabditis elegans]
gi|5596645|emb|CAB51465.1| Protein RPB-12 [Caenorhabditis elegans]
Length = 62
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+C EN +KP D I+CRECGYRILYKKR R+++ Y+AR
Sbjct: 21 YICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
>gi|348684720|gb|EGZ24535.1| hypothetical protein PHYSODRAFT_284939 [Phytophthora sojae]
Length = 69
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M PE + YICGDCG+ N L D I+CR CGYRI+YK RT+R++Q+EAR
Sbjct: 20 MIKDPE-IKYICGDCGIVNYLSARDPIRCRACGYRIMYKARTKRLIQFEAR 69
>gi|449549600|gb|EMD40565.1| hypothetical protein CERSUDRAFT_80234 [Ceriporiopsis
subvermispora B]
Length = 71
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 3 PQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P P + + Y+C DCG +N +K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 22 PAPRQEMEYLCADCGAKNEIKSREPIRCRECGHRIMYKKRTKRMVQFEAR 71
>gi|170091966|ref|XP_001877205.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648698|gb|EDR12941.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 65
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 3 PQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P P + + YIC DCG +N +K + I+CRECG+RI+YKKRT+R+VQ+EAR
Sbjct: 16 PAPRQDMEYICADCGAKNEIKAREPIRCRECGHRIMYKKRTKRMVQFEAR 65
>gi|281205821|gb|EFA80010.1| RNA polymerase [Polysphondylium pallidum PN500]
Length = 46
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P YICG+CG EN +KP + I+C++C YRI+YKKRT R++Q+EAR
Sbjct: 2 PCIYICGECGAENEIKPKEPIKCKDCTYRIMYKKRTDRMIQFEAR 46
>gi|238486154|ref|XP_002374315.1| metallothionein-I gene transcription activator [Aspergillus
flavus NRRL3357]
gi|317144439|ref|XP_003189600.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Aspergillus oryzae RIB40]
gi|220699194|gb|EED55533.1| metallothionein-I gene transcription activator [Aspergillus
flavus NRRL3357]
Length = 73
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CG+C +LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 30 VAYLCGECNARVSLKRGDQIRCKECGHRVLYKERTKRMVQFEAR 73
>gi|340369099|ref|XP_003383086.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Amphimedon queenslandica]
Length = 64
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 37/46 (80%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PV YICG+C EN ++P D I+C +CGYRILYKKRT+RI+ ++AR
Sbjct: 19 NPVIYICGECHGENEIRPRDPIRCTQCGYRILYKKRTKRIIVFDAR 64
>gi|344282287|ref|XP_003412905.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Loxodonta africana]
Length = 58
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R V ++A
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRWVGFDA 57
>gi|313216450|emb|CBY37758.1| unnamed protein product [Oikopleura dioica]
gi|313244182|emb|CBY15019.1| unnamed protein product [Oikopleura dioica]
Length = 65
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+D P + YICG+C +KP D ++CRECGYRILYKKRTRR++ ++ R
Sbjct: 15 LDEGPRMMEYICGECHFNQEVKPKDPVRCRECGYRILYKKRTRRLIVFDGR 65
>gi|195429737|ref|XP_002062914.1| GK19446 [Drosophila willistoni]
gi|194158999|gb|EDW73900.1| GK19446 [Drosophila willistoni]
Length = 57
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D ++YICG+C EN ++ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 DSVKTAMTYICGECHHENEMRARDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|225559787|gb|EEH08069.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus G186AR]
gi|240276339|gb|EER39851.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus H143]
gi|325089802|gb|EGC43112.1| metallothionein-I gene transcription activator [Ajellomyces
capsulatus H88]
Length = 75
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CGDC ++K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 31 SVTYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 75
>gi|154287308|ref|XP_001544449.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408090|gb|EDN03631.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 75
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CGDC ++K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 31 SVTYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 75
>gi|302423866|ref|XP_003009763.1| metallothionein-I gene transcription activator [Verticillium
albo-atrum VaMs.102]
gi|261352909|gb|EEY15337.1| metallothionein-I gene transcription activator [Verticillium
albo-atrum VaMs.102]
Length = 81
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDCG++ ++ GD I+C+ECG RILYK+RT+R+VQ+EAR
Sbjct: 38 MQYLCGDCGLKFQMRRGDAIRCKECGCRILYKERTKRMVQFEAR 81
>gi|346973185|gb|EGY16637.1| metallothionein-I transcription activator [Verticillium dahliae
VdLs.17]
Length = 81
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDCG++ ++ GD I+C+ECG RILYK+RT+R+VQ+EAR
Sbjct: 38 MQYLCGDCGLKFQMRRGDAIRCKECGCRILYKERTKRMVQFEAR 81
>gi|327353757|gb|EGE82614.1| hypothetical protein BDDG_05558 [Ajellomyces dermatitidis ATCC
18188]
Length = 75
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CGDC ++K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 31 SVTYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 75
>gi|157135972|ref|XP_001663644.1| RNA polymerase small Zn-binding subunit, putative [Aedes aegypti]
gi|170033365|ref|XP_001844548.1| RNA polymerase small Zn-binding subunit [Culex quinquefasciatus]
gi|108870059|gb|EAT34284.1| AAEL013457-PA [Aedes aegypti]
gi|167874286|gb|EDS37669.1| RNA polymerase small Zn-binding subunit [Culex quinquefasciatus]
Length = 58
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 36/42 (85%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y+CG+C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 17 YVCGECHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|126653937|ref|XP_001388394.1| transcription activator [Cryptosporidium parvum Iowa II]
gi|126117487|gb|EAZ51587.1| transcription activator, putative [Cryptosporidium parvum Iowa
II]
Length = 49
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 6 EPVSYICGDCGME-NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
EPV+YICG+CG + + L G ++CR CG RILYKKRTR+++QYEAR
Sbjct: 3 EPVTYICGECGADVSLLSHGAAVRCRTCGCRILYKKRTRKMIQYEAR 49
>gi|221219316|gb|ACM08319.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 58
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ ICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMICICGECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>gi|268535754|ref|XP_002633012.1| C. briggsae CBR-RPB-12 protein [Caenorhabditis briggsae]
Length = 62
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+C EN +KP D I+CRECGYRILYKKR R+++ Y+AR
Sbjct: 21 YICGECHGENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
>gi|70952587|ref|XP_745452.1| transcription activator [Plasmodium chabaudi chabaudi]
gi|56525778|emb|CAH78586.1| transcription activator, putative [Plasmodium chabaudi chabaudi]
Length = 58
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D EPV YICG+CG++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 9 DISTEPVVYICGECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>gi|195429753|ref|XP_002062922.1| GK19442 [Drosophila willistoni]
gi|194159007|gb|EDW73908.1| GK19442 [Drosophila willistoni]
Length = 57
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D ++YICG+C EN ++ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 DNVKTAMTYICGECHHENEMRARDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|451999361|gb|EMD91824.1| hypothetical protein COCHEDRAFT_1214224 [Cochliobolus
heterostrophus C5]
Length = 68
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+D V Y CGDC M+ LK G+ I+CR CG+R+LYK+RT R+VQ+EAR
Sbjct: 18 VDATARTVHYKCGDCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQFEAR 68
>gi|291392021|ref|XP_002712576.1| PREDICTED: mCG145114-like [Oryctolagus cuniculus]
Length = 263
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 38/47 (80%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYE 49
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFD 56
>gi|393905779|gb|EFO17975.2| hypothetical protein LOAG_10524 [Loa loa]
Length = 63
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+C EN ++P D I+CRECGYRILYKKR R+++ Y+AR
Sbjct: 22 YICGECHSENEIRPKDAIRCRECGYRILYKKRCRKLMVYDAR 63
>gi|124513584|ref|XP_001350148.1| transcription activator, putative [Plasmodium falciparum 3D7]
gi|23615565|emb|CAD52557.1| transcription activator, putative [Plasmodium falciparum 3D7]
Length = 58
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D EPV YICG+CG++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 9 DISTEPVVYICGECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>gi|392862906|gb|EAS36412.2| metallothionein-I transcription activator [Coccidioides immitis RS]
Length = 230
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+CGDC +K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 187 VIYVCGDCSARVQMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 230
>gi|212542393|ref|XP_002151351.1| metallothionein-I gene transcription activator [Talaromyces
marneffei ATCC 18224]
gi|210066258|gb|EEA20351.1| metallothionein-I gene transcription activator [Talaromyces
marneffei ATCC 18224]
Length = 82
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PQ + YICG+C + +L P ++C ECG+RILYK+RT+RIVQ+EAR
Sbjct: 34 PQVQSSRYICGECDAKFSLPPNATLRCTECGHRILYKERTKRIVQFEAR 82
>gi|145229681|ref|XP_001389149.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Aspergillus niger CBS 513.88]
gi|134055258|emb|CAK43844.1| unnamed protein product [Aspergillus niger]
Length = 74
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CG+C +LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 31 VAYLCGECNSRVSLKRGDQIRCKECGHRVLYKERTKRMVQFEAR 74
>gi|383850953|ref|XP_003701028.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Megachile rotundata]
gi|383850955|ref|XP_003701029.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Megachile rotundata]
Length = 57
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YICG+C +N ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 12 QAMVYICGECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|345570821|gb|EGX53641.1| hypothetical protein AOL_s00006g99 [Arthrobotrys oligospora ATCC
24927]
Length = 78
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ + Y+C DCG TL D I+C+ECG+RILYK+RT+R+VQ+EAR
Sbjct: 30 PRQTSMKYLCADCGKSVTLNKADPIRCKECGFRILYKERTKRMVQFEAR 78
>gi|358367010|dbj|GAA83630.1| metallothionein-I gene transcription activator [Aspergillus
kawachii IFO 4308]
Length = 77
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CG+C +LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 34 VAYLCGECNSRVSLKRGDQIRCKECGHRVLYKERTKRMVQFEAR 77
>gi|189189346|ref|XP_001931012.1| hypothetical protein PTRG_00679 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972618|gb|EDU40117.1| hypothetical protein PTRG_00679 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 72
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+D V Y CGDC M+ LK G+ I+CR CG+R+LYK+RT R+VQ+EAR
Sbjct: 22 IDSNARAVLYKCGDCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQFEAR 72
>gi|308478078|ref|XP_003101251.1| CRE-RPB-12 protein [Caenorhabditis remanei]
gi|308263956|gb|EFP07909.1| CRE-RPB-12 protein [Caenorhabditis remanei]
Length = 62
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+C EN +KP D I+CRECGYRILYKKR R+++ Y+AR
Sbjct: 21 YICGECHGENEIKPKDAIRCRECGYRILYKKRCRKLMVYDAR 62
>gi|225682721|gb|EEH21005.1| hypothetical protein PABG_03236 [Paracoccidioides brasiliensis
Pb03]
Length = 75
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 37/45 (82%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+CGDC ++K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 31 SVVYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 75
>gi|403357144|gb|EJY78190.1| Transcription activator, putative [Oxytricha trifallax]
Length = 77
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 1 MDPQPEP-VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M+ + +P V+YICG CG +N L VI+C CG+RI YKKR R+++QYEAR
Sbjct: 26 MESREKPKVTYICGGCGKDNKLDKDSVIRCNHCGHRIFYKKRERKLLQYEAR 77
>gi|328793478|ref|XP_001122738.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Apis mellifera]
gi|340723949|ref|XP_003400349.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Bombus terrestris]
gi|350422577|ref|XP_003493213.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Bombus impatiens]
gi|380022486|ref|XP_003695075.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Apis florea]
Length = 57
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YICG+C +N ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 12 QAMVYICGECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|328770059|gb|EGF80101.1| hypothetical protein BATDEDRAFT_24859 [Batrachochytrium
dendrobatidis JAM81]
Length = 101
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y CG+C N +KP + I+C++CGYRI+YKKRT+R+VQ+EAR
Sbjct: 58 VEYTCGECTALNQIKPREPIRCKDCGYRIMYKKRTKRMVQFEAR 101
>gi|119500158|ref|XP_001266836.1| metallothionein-I gene transcription activator [Neosartorya
fischeri NRRL 181]
gi|119415001|gb|EAW24939.1| metallothionein-I gene transcription activator [Neosartorya
fischeri NRRL 181]
Length = 75
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CG+C +LK GD I+C++CG+R+LYK+RT+R+VQ+EAR
Sbjct: 32 VAYLCGECNARVSLKRGDQIRCKDCGHRVLYKERTKRMVQFEAR 75
>gi|156540278|ref|XP_001599352.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Nasonia vitripennis]
Length = 57
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 38/46 (82%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YICG+C +N ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 12 QTMVYICGECHHDNEIRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 57
>gi|295669478|ref|XP_002795287.1| metallothionein-I gene transcription activator [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226285221|gb|EEH40787.1| metallothionein-I gene transcription activator [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 75
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 37/45 (82%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+CGDC ++K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 31 SVVYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 75
>gi|347837596|emb|CCD52168.1| similar to metallothionein-I gene transcription activator
[Botryotinia fuckeliana]
Length = 78
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDC LK GD I+C+ECG+R+LYK+RT R+VQ+EAR
Sbjct: 35 IKYLCGDCNASVMLKRGDPIRCKECGHRVLYKERTSRMVQFEAR 78
>gi|242768787|ref|XP_002341640.1| metallothionein-I gene transcription activator [Talaromyces
stipitatus ATCC 10500]
gi|218724836|gb|EED24253.1| metallothionein-I gene transcription activator [Talaromyces
stipitatus ATCC 10500]
Length = 80
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 37/49 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
PQ + V YICG+C + +L ++C ECG+RILYK+RT+RIVQ+EAR
Sbjct: 32 PQVQSVRYICGECDAKFSLPHNATLRCTECGHRILYKERTKRIVQFEAR 80
>gi|121708186|ref|XP_001272054.1| metallothionein-I gene transcription activator [Aspergillus
clavatus NRRL 1]
gi|119400202|gb|EAW10628.1| metallothionein-I gene transcription activator [Aspergillus
clavatus NRRL 1]
Length = 76
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 38/44 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V+Y+CG+C +LK GD I+C++CG+R+LYK+RT+R+VQ+EAR
Sbjct: 33 VAYLCGECNARVSLKRGDQIRCKDCGHRVLYKERTKRMVQFEAR 76
>gi|320039447|gb|EFW21381.1| metallothionein-I transcription activator [Coccidioides posadasii
str. Silveira]
Length = 79
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+CGDC +K GD I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 35 SVIYVCGDCSARVQMKRGDQIRCKECGHRVLYKERTKRMVQFQAR 79
>gi|440638547|gb|ELR08466.1| hypothetical protein GMDG_00530 [Geomyces destructans 20631-21]
Length = 77
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++Y+CGDC LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 34 INYLCGDCNSRVPLKRGDPIRCKECGHRVLYKERTKRMVQFEAR 77
>gi|380793279|gb|AFE68515.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca mulatta]
Length = 54
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 36/44 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLV 53
>gi|392568534|gb|EIW61708.1| hypothetical protein TRAVEDRAFT_27224 [Trametes versicolor
FP-101664 SS1]
Length = 68
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 3 PQP-EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P P + + Y+C DCG +N ++ + I+CRECG+RI+YKKRT R+VQ+EAR
Sbjct: 19 PAPRQDMEYLCADCGAKNEIRSREPIRCRECGHRIMYKKRTNRMVQFEAR 68
>gi|68076071|ref|XP_679955.1| transcription activator [Plasmodium berghei strain ANKA]
gi|56500811|emb|CAH95077.1| transcription activator, putative [Plasmodium berghei]
Length = 58
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D +PV YICG+CG++ + P ++C+ CG +I +KKR+RR++QYEAR
Sbjct: 9 DISTDPVVYICGECGIDTVIPPNASLRCKNCGSKIFFKKRSRRVMQYEAR 58
>gi|209876450|ref|XP_002139667.1| DNA directed RNA polymerase, subunit ABC4 [Cryptosporidium muris
RN66]
gi|209555273|gb|EEA05318.1| DNA directed RNA polymerase, subunit ABC4, putative
[Cryptosporidium muris RN66]
Length = 69
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 6 EPVSYICGDCGME-NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
EPV+YIC +CG + + L G ++CR CG RILYKKRTR+++QYEAR
Sbjct: 23 EPVTYICSECGADVSLLTHGAAVRCRTCGCRILYKKRTRKMIQYEAR 69
>gi|257205604|emb|CAX82453.1| DNA-directed RNA Polymerase II subunit K [Schistosoma japonicum]
gi|257206708|emb|CAX82982.1| DNA-directed RNA Polymerase II subunit K [Schistosoma japonicum]
Length = 66
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
VSYICG+C EN ++P ++++C ECG+R+LYKKR++R+ +EAR
Sbjct: 23 VSYICGECRAENEIRPRELVRCLECGHRVLYKKRSKRMSVFEAR 66
>gi|328696808|ref|XP_003240136.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Acyrthosiphon pisum]
Length = 60
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ + CG C EN +KP D I+CRECGYRI+YKKRT+R+V + AR
Sbjct: 12 PKKALIYIFCGACQAENEMKPKDPIRCRECGYRIMYKKRTKRLVVFNAR 60
>gi|452847333|gb|EME49265.1| hypothetical protein DOTSEDRAFT_76625 [Dothistroma septosporum
NZE10]
Length = 827
Score = 61.2 bits (147), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+PV Y+CGDC + LK GD I+C+ECGYR+LYK+RT R
Sbjct: 789 KPVQYLCGDCDTKVALKKGDPIRCKECGYRVLYKERTNR 827
>gi|315042740|ref|XP_003170746.1| metallothionein-I transcription activator [Arthroderma gypseum
CBS 118893]
gi|311344535|gb|EFR03738.1| metallothionein-I transcription activator [Arthroderma gypseum
CBS 118893]
Length = 76
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICGDC ++K D I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 32 SVVYICGDCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQFQAR 76
>gi|380494583|emb|CCF33043.1| DNA directed RNA polymerase [Colletotrichum higginsianum]
Length = 75
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDCG++ L+ D I+C+ECG RILYK+RT+R+VQ+EAR
Sbjct: 32 MQYLCGDCGLKFQLRRADPIRCKECGCRILYKERTKRMVQFEAR 75
>gi|293344637|ref|XP_002725788.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
gi|293356445|ref|XP_002728880.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Rattus norvegicus]
Length = 107
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 2 DPQP---EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D QP +P+ ICG+C EN +K D I+C+ECGYRI+YKKRT+R++ ++AR
Sbjct: 34 DVQPSKQQPMINICGECHTENEIKSRDPIRCKECGYRIMYKKRTKRLMVFDAR 86
>gi|406862727|gb|EKD15776.1| putative transcription activator [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 76
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y CGDC + LK GD I+C+ECG+R+LYK+RT+R+VQ+EAR
Sbjct: 33 ILYTCGDCSAKVPLKRGDPIRCKECGHRVLYKERTKRMVQFEAR 76
>gi|388856971|emb|CCF49391.1| related to RPC10-DNA-directed RNA polymerases I, II, III 7.7 KD
subunit [Ustilago hordei]
Length = 71
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC DC N ++P + I+CRECG+R++YKKRT+R++ +EAR
Sbjct: 28 MEYICADCAASNEIRPREPIRCRECGHRVMYKKRTKRMLHFEAR 71
>gi|310800816|gb|EFQ35709.1| DNA directed RNA polymerase [Glomerella graminicola M1.001]
Length = 75
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDCG++ L+ D I+C+ECG RILYK+RT+R+VQ+EAR
Sbjct: 32 IQYLCGDCGLKFQLRRADPIRCKECGCRILYKERTKRMVQFEAR 75
>gi|326475683|gb|EGD99692.1| metallothionein-I transcription activator [Trichophyton tonsurans
CBS 112818]
gi|326484604|gb|EGE08614.1| metallothionein-I transcription activator [Trichophyton equinum
CBS 127.97]
Length = 76
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICGDC ++K D I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 32 SVVYICGDCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQFQAR 76
>gi|327295542|ref|XP_003232466.1| metallothionein-I transcription activator [Trichophyton rubrum
CBS 118892]
gi|326465638|gb|EGD91091.1| metallothionein-I transcription activator [Trichophyton rubrum
CBS 118892]
Length = 76
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICGDC ++K D I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 32 SVVYICGDCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQFQAR 76
>gi|296807981|ref|XP_002844329.1| metallothionein-I gene transcription activator [Arthroderma otae
CBS 113480]
gi|238843812|gb|EEQ33474.1| metallothionein-I gene transcription activator [Arthroderma otae
CBS 113480]
Length = 76
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V YICGDC ++K D I+C+ECG+R+LYK+RT+R+VQ++AR
Sbjct: 32 SVVYICGDCSSRVSMKRNDQIRCKECGHRVLYKERTKRMVQFQAR 76
>gi|429852295|gb|ELA27438.1| metallothionein-i gene transcription activator [Colletotrichum
gloeosporioides Nara gc5]
Length = 75
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y+CGDCG++ L+ D I+C+ECG RILYK+RT+R+VQ+EAR
Sbjct: 32 MQYLCGDCGLKFQLRRADPIRCKECGCRILYKERTKRMVQFEAR 75
>gi|355779861|gb|EHH64337.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca fascicularis]
Length = 54
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 9 SPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRCI 53
>gi|343426011|emb|CBQ69543.1| related to RPC10-DNA-directed RNA polymerases I, II, III 7.7 KD
subunit [Sporisorium reilianum SRZ2]
Length = 71
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC DC N ++P + I+CRECG+R++YKKRT+R++ +EAR
Sbjct: 28 MEYICADCAATNEIRPREPIRCRECGHRVMYKKRTKRMLHFEAR 71
>gi|115653155|ref|XP_782969.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Strongylocentrotus purpuratus]
gi|390367289|ref|XP_003731218.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Strongylocentrotus purpuratus]
Length = 64
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+C EN ++ D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 23 YICGECHQENEIRARDPIRCRECGYRIMYKKRTKRMVVFDAR 64
>gi|396463242|ref|XP_003836232.1| hypothetical protein LEMA_P055730.1 [Leptosphaeria maculans JN3]
gi|312212784|emb|CBX92867.1| hypothetical protein LEMA_P055730.1 [Leptosphaeria maculans JN3]
Length = 70
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+D V Y CGDC + LK G+ I+CR CG+R+LYK+RT R+VQ+EAR
Sbjct: 20 IDTTARTVHYKCGDCDQDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQFEAR 70
>gi|405120024|gb|AFR94795.1| hypothetical protein CNAG_07424 [Cryptococcus neoformans var.
grubii H99]
Length = 103
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 32/40 (80%)
Query: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
PE +SYICGDCG + ++P + I+C+ECG+R++YK RT R
Sbjct: 24 PETISYICGDCGAQTAMQPSEFIRCKECGHRVMYKPRTTR 63
>gi|448097041|ref|XP_004198574.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|448111073|ref|XP_004201752.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|359379996|emb|CCE82237.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
gi|359464741|emb|CCE88446.1| Piso0_001951 [Millerozyma farinosa CBS 7064]
Length = 73
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C TL D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCAASFTLSKSDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|85000041|ref|XP_954739.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302885|emb|CAI75263.1| hypothetical protein, conserved [Theileria annulata]
Length = 468
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
EP++YICG+CG + L+P ++CR CG RILYKKR+ R
Sbjct: 13 EPITYICGECGHDVALQPTSAVRCRNCGSRILYKKRSYR 51
>gi|449284086|gb|EMC90667.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Columba livia]
Length = 55
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 53
>gi|431901763|gb|ELK08640.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Pteropus alecto]
Length = 66
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRCI 53
>gi|443718281|gb|ELU08986.1| hypothetical protein CAPTEDRAFT_214436 [Capitella teleta]
Length = 62
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ + Y CG+C EN +K D I+CRECGYRI+YKKRT+R+V ++ R
Sbjct: 14 PKTSAMVYTCGECHSENEIKARDPIRCRECGYRIMYKKRTKRLVVFDGR 62
>gi|351695835|gb|EHA98753.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Heterocephalus glaber]
gi|440913290|gb|ELR62757.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Bos grunniens mutus]
Length = 55
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRCI 53
>gi|148677144|gb|EDL09091.1| mCG49314 [Mus musculus]
Length = 80
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ ICG+C EN +K D I+CRECGYRI+YKKRT+R+V
Sbjct: 10 PKQQPMIDICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLV 53
>gi|378729408|gb|EHY55867.1| DNA-directed RNA Polymerase II subunit K [Exophiala dermatitidis
NIH/UT8656]
Length = 78
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+CG+C + +L GD I+C CG+R+LYK+RT+R+VQ+EAR
Sbjct: 35 VQYVCGECAAKVSLGRGDAIRCSMCGHRVLYKERTKRMVQFEAR 78
>gi|443899865|dbj|GAC77193.1| uncharacterized conserved protein [Pseudozyma antarctica T-34]
Length = 138
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
YIC DC N ++P + I+CRECG+R++YKKRT+R++ +EA
Sbjct: 30 YICADCAATNEIRPREPIRCRECGHRVMYKKRTKRMLHFEA 70
>gi|66810820|ref|XP_639117.1| RNA polymerase, 7 kDa subunit [Dictyostelium discoideum AX4]
gi|74854657|sp|Q54R66.1|RPAB4_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=DNA-directed RNA polymerase II
subunit K
gi|60467741|gb|EAL65759.1| RNA polymerase, 7 kDa subunit [Dictyostelium discoideum AX4]
Length = 46
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P YICG+CG E+ +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
>gi|330936159|ref|XP_003305267.1| hypothetical protein PTT_18070 [Pyrenophora teres f. teres 0-1]
gi|311317773|gb|EFQ86642.1| hypothetical protein PTT_18070 [Pyrenophora teres f. teres 0-1]
Length = 72
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y CGDC M+ LK G+ I+CR CG+R+LYK+RT R+VQ+EAR
Sbjct: 29 VLYKCGDCDMDVPLKRGEPIRCRNCGHRVLYKQRTNRMVQFEAR 72
>gi|260943149|ref|XP_002615873.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851163|gb|EEQ40627.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 73
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C CG +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCGASFSLGKSDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|345329915|ref|XP_001505747.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ornithorhynchus anatinus]
Length = 98
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKR 51
>gi|255728983|ref|XP_002549417.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240133733|gb|EER33289.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 73
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C CG L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCGASFALSKSDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|221220306|gb|ACM08814.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 57
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R
Sbjct: 10 PKQQPMIYICGECHTENEIKARDPIRCRECGYRIMYKKRTKR 51
>gi|412990316|emb|CCO19634.1| predicted protein [Bathycoccus prasinos]
Length = 58
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
++Y CGDCG E L+PGD++ CRECGYRIL+KKRT++
Sbjct: 13 IAYNCGDCGSEVVLRPGDIVICRECGYRILFKKRTKQ 49
>gi|344302315|gb|EGW32620.1| DNA-directed RNA polymerases I [Spathaspora passalidarum NRRL
Y-27907]
Length = 73
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCAASFSLSKNDAIRCKECGHRVIYKSRTRRMVQFEAR 73
>gi|71026783|ref|XP_763035.1| transcription activator [Theileria parva strain Muguga]
gi|68349988|gb|EAN30752.1| transcription activator, putative [Theileria parva]
Length = 58
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
D EP++YICG+CG + +L+P V++CR CG RILYKKR+ R
Sbjct: 9 DDLTEPITYICGECGHDVSLQPSSVVRCRNCGSRILYKKRSYR 51
>gi|68482071|ref|XP_715053.1| hypothetical protein CaO19.7255 [Candida albicans SC5314]
gi|46436658|gb|EAK96017.1| hypothetical protein CaO19.7255 [Candida albicans SC5314]
Length = 102
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RT+R+VQ+EAR
Sbjct: 59 VKYNCAQCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQFEAR 102
>gi|146414127|ref|XP_001483034.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146392733|gb|EDK40891.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 73
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCATSFSLGKSDAIRCKECGHRVIYKSRTRRMVQFEAR 73
>gi|301776589|ref|XP_002923710.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Ailuropoda melanoleuca]
gi|281347699|gb|EFB23283.1| hypothetical protein PANDA_012903 [Ailuropoda melanoleuca]
Length = 58
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+++ICG C EN +K D ++CR+C YRI+YKKR +R V ++ +
Sbjct: 10 PEHQPMTHICGKCHTENFIKSRDPVRCRDCAYRIMYKKRIKRWVAFDTQ 58
>gi|126274679|ref|XP_001387619.1| DNA-directed RNA polymerases small subunit [Scheffersomyces
stipitis CBS 6054]
gi|126213489|gb|EAZ63596.1| DNA-directed RNA polymerases small subunit [Scheffersomyces
stipitis CBS 6054]
Length = 72
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 29 VRYNCAQCAASFSLSKNDAIRCKECGHRVIYKARTRRMVQFEAR 72
>gi|344230714|gb|EGV62599.1| hypothetical protein CANTEDRAFT_115112 [Candida tenuis ATCC
10573]
gi|344230715|gb|EGV62600.1| hypothetical protein CANTEDRAFT_115112 [Candida tenuis ATCC
10573]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C CG +L D I+C++CG+R++YK RTR++VQ+EAR
Sbjct: 30 VKYYCAQCGSSFSLNKSDAIRCKDCGHRVIYKARTRKMVQFEAR 73
>gi|50420273|ref|XP_458669.1| DEHA2D04664p [Debaryomyces hansenii CBS767]
gi|49654336|emb|CAG86808.1| DEHA2D04664p [Debaryomyces hansenii CBS767]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCATSFSLGKSDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|448534956|ref|XP_003870870.1| Rpc10 RNA polymerase subunit ABC10-alpha of RNA polymerase
complexes I, II, and III [Candida orthopsilosis Co
90-125]
gi|354548300|emb|CCE45036.1| hypothetical protein CPAR2_700400 [Candida parapsilosis]
gi|380355226|emb|CCG24742.1| Rpc10 RNA polymerase subunit ABC10-alpha of RNA polymerase
complexes I, II, and III [Candida orthopsilosis]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCAASFSLGKNDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|291402177|ref|XP_002717412.1| PREDICTED: DNA directed RNA polymerase II polypeptide K
[Oryctolagus cuniculus]
Length = 57
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
P+ +P+ YICG+C EN +K D I+CRECGY I+Y KRT+R V ++A
Sbjct: 10 PKQQPMIYICGECHTENEVKLRDPIRCRECGYGIMYWKRTKRSVVFDA 57
>gi|149239678|ref|XP_001525715.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451208|gb|EDK45464.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RTRR+VQ+EAR
Sbjct: 30 VKYNCAQCAASFSLGKNDAIRCKECGHRVIYKARTRRMVQFEAR 73
>gi|294898939|ref|XP_002776430.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239883409|gb|EER08246.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 68
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 5 PEPVSYICGDCGMENTLKP-GDVIQCRECGYRILYKKRTRRIVQYEAR 51
P V Y+CG+CG E LK D I+C CG+RILYKKR RR++ ++AR
Sbjct: 21 PNQVLYVCGNCGNEQELKLMADAIKCNRCGHRILYKKRQRRVMIFDAR 68
>gi|296424739|ref|XP_002841904.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638155|emb|CAZ86095.1| unnamed protein product [Tuber melanosporum]
Length = 76
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 35/42 (83%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y+C +CG++ + G+ I+C+ECG+RILYK+RT R+VQ+EAR
Sbjct: 35 YLCAECGVKVGINKGEPIRCKECGHRILYKQRTTRMVQFEAR 76
>gi|238878190|gb|EEQ41828.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RT+R+VQ+EAR
Sbjct: 30 VKYNCAQCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQFEAR 73
>gi|338728561|ref|XP_003365696.1| PREDICTED: hypothetical protein LOC100630853 [Equus caballus]
Length = 119
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 36/48 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
P+ + V YICG+C EN +K + I+CRE GYRI++KKR +R+V ++A
Sbjct: 50 PKQQSVLYICGECHTENEIKSRNPIRCRERGYRIMHKKRIKRLVVFDA 97
>gi|241950503|ref|XP_002417974.1| DNA-directed RNA polymerases I, II, and III minisubunit, putative
[Candida dubliniensis CD36]
gi|223641312|emb|CAX45693.1| DNA-directed RNA polymerases I, II, and III minisubunit, putative
[Candida dubliniensis CD36]
Length = 73
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C C +L D I+C+ECG+R++YK RT+R+VQ+EAR
Sbjct: 30 VKYNCAQCAASFSLSKSDTIRCKECGHRVIYKARTKRMVQFEAR 73
>gi|294947882|ref|XP_002785507.1| Voltage-dependent anion-selective channel, putative [Perkinsus
marinus ATCC 50983]
gi|239899486|gb|EER17303.1| Voltage-dependent anion-selective channel, putative [Perkinsus
marinus ATCC 50983]
Length = 403
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 5 PEPVSYICGDCGMENTLK-PGDVIQCRECGYRILYKKRTRRIVQY 48
P V Y+CG+CG E LK D I+C CG+RILYKKR RR+ Y
Sbjct: 28 PNQVLYVCGNCGNEQELKLMADAIKCNRCGHRILYKKRQRRLESY 72
>gi|393245315|gb|EJD52826.1| hypothetical protein AURDEDRAFT_35539, partial [Auricularia
delicata TFB-10046 SS5]
Length = 53
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
PQ + Y+C DCG +N +KP + I+CRECG+RI+YKKRT+R
Sbjct: 12 PQRADMEYLCADCGAKNEIKPREPIRCRECGHRIMYKKRTKR 53
>gi|156359324|ref|XP_001624720.1| predicted protein [Nematostella vectensis]
gi|156211517|gb|EDO32620.1| predicted protein [Nematostella vectensis]
Length = 60
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
+ + YICG+C EN +K D I+CRECGYRI+YKKRTRR +
Sbjct: 12 TRQHAMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTRRSI 55
>gi|303273088|ref|XP_003055905.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461989|gb|EEH59281.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 96
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 17/56 (30%)
Query: 13 GDCGMENTLKPGDVIQCRECGYRILYKKRTRR-----------------IVQYEAR 51
DCG E L+PGD++ CRECGYRILYKKRT++ +VQ+EAR
Sbjct: 41 ADCGSEVMLRPGDIVICRECGYRILYKKRTKQSAFTLLCSRSHDDIFSAVVQFEAR 96
>gi|403223468|dbj|BAM41599.1| putative RPC10 subunit of RNA polymerases I, II, and III
[Theileria orientalis strain Shintoku]
Length = 364
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
D EP++YICG+CG + L+ ++CR CG RILYKKR+ R
Sbjct: 8 DDMAEPITYICGECGNDVALQSTAAVRCRNCGSRILYKKRSYR 50
>gi|389642813|ref|XP_003719039.1| hypothetical protein MGG_11667 [Magnaporthe oryzae 70-15]
gi|351641592|gb|EHA49455.1| hypothetical protein MGG_11667 [Magnaporthe oryzae 70-15]
gi|440462539|gb|ELQ32557.1| hypothetical protein OOU_Y34scaffold01092g7 [Magnaporthe oryzae
Y34]
gi|440490889|gb|ELQ70385.1| hypothetical protein OOW_P131scaffold00034g7 [Magnaporthe oryzae
P131]
Length = 76
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P +P+ Y CGDCG + + D I+C ECG R+LYK RT R++++EAR
Sbjct: 28 PPSQPILYSCGDCGFKFEMNRRDPIRCTECGCRVLYKNRTNRMIEFEAR 76
>gi|312089042|ref|XP_003146096.1| hypothetical protein LOAG_10524 [Loa loa]
Length = 65
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
YICG+C EN ++P D I+CRECGYRILYKKR R+
Sbjct: 22 YICGECHSENEIRPKDAIRCRECGYRILYKKRCRK 56
>gi|332017568|gb|EGI58268.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Acromyrmex echinatior]
Length = 74
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+ + YICG+C +N ++ D I+CRECGYRI+YKKRT+R
Sbjct: 11 KQAMVYICGECHHDNEIRAKDAIRCRECGYRIMYKKRTKR 50
>gi|291000242|ref|XP_002682688.1| predicted protein [Naegleria gruberi]
gi|284096316|gb|EFC49944.1| predicted protein [Naegleria gruberi]
Length = 121
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
V YICG C + NT+K GD I+C+ CGYRI+YK+RT R
Sbjct: 77 VVYICGHCAVLNTIKQGDAIRCKNCGYRIMYKQRTTR 113
>gi|452987682|gb|EME87437.1| hypothetical protein MYCFIDRAFT_26394 [Pseudocercospora fijiensis
CIRAD86]
Length = 77
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+PV Y+CGDC + LK GD I+C+ECGYR+LYK+RT R
Sbjct: 39 KPVHYLCGDCDNKVVLKKGDPIRCKECGYRVLYKERTNR 77
>gi|50288377|ref|XP_446617.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525925|emb|CAG59544.1| unnamed protein product [Candida glabrata]
Length = 70
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ V YIC +C + +L D ++C++CG+RIL K RTRR+VQ+EAR
Sbjct: 22 SKTATVKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTRRMVQFEAR 70
>gi|6321937|ref|NP_012013.1| Rpc10p [Saccharomyces cerevisiae S288c]
gi|730606|sp|P40422.1|RPAB4_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC4; Short=RNA polymerases I, II, and III subunit
ABC4; AltName: Full=ABC10-alpha
gi|14278333|pdb|1I3Q|L Chain L, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278344|pdb|1I50|L Chain L, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278374|pdb|1I6H|L Chain L, Rna Polymerase Ii Elongation Complex
gi|20150722|pdb|1K83|L Chain L, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749627|pdb|1NIK|L Chain L, Wild Type Rna Polymerase Ii
gi|30749748|pdb|1NT9|L Chain L, Complete 12-Subunit Rna Polymerase Ii
gi|34810564|pdb|1PQV|L Chain L, Rna Polymerase Ii-Tfiis Complex
gi|46015424|pdb|1R5U|L Chain L, Rna Polymerase Ii Tfiib Complex
gi|46015789|pdb|1SFO|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965920|pdb|1R9S|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965932|pdb|1R9T|L Chain L, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966116|pdb|1TWA|L Chain L, Rna Polymerase Ii Complexed With Atp
gi|56966130|pdb|1TWC|L Chain L, Rna Polymerase Ii Complexed With Gtp
gi|56966140|pdb|1TWF|L Chain L, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966150|pdb|1TWG|L Chain L, Rna Polymerase Ii Complexed With Ctp
gi|56966160|pdb|1TWH|L Chain L, Rna Polymerase Ii Complexed With 2'datp
gi|58177175|pdb|1WCM|L Chain L, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679455|pdb|1Y1W|L Chain L, Complete Rna Polymerase Ii Elongation Complex
gi|61679472|pdb|1Y77|L Chain L, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679513|pdb|1Y1V|L Chain L, Refined Rna Polymerase Ii-tfiis Complex
gi|61679526|pdb|1Y1Y|L Chain L, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754254|pdb|2B63|L Chain L, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590865|pdb|2B8K|L Chain L, 12-Subunit Rna Polymerase Ii
gi|122920070|pdb|2E2H|L Chain L, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With
Gtp
gi|122920085|pdb|2E2I|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dgtp
gi|122920100|pdb|2E2J|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921039|pdb|2NVQ|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921075|pdb|2NVT|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921091|pdb|2NVX|L Chain L, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
2'- Dutp
gi|122921106|pdb|2NVY|L Chain L, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921118|pdb|2NVZ|L Chain L, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104685|pdb|2JA5|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex A
gi|134104700|pdb|2JA6|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex B
gi|134104721|pdb|2JA7|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104733|pdb|2JA7|X Chain X, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex C
gi|134104745|pdb|2JA8|L Chain L, Cpd Lesion Containing Rna Polymerase Ii Elongation
Complex D
gi|146387193|pdb|2YU9|L Chain L, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877784|pdb|2R7Z|L Chain L, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172238|pdb|2R92|L Chain L, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172251|pdb|2R93|L Chain L, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|194368743|pdb|3CQZ|L Chain L, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|218766963|pdb|2VUM|L Chain L, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|224983601|pdb|3FKI|L Chain L, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781925|pdb|3GTG|L Chain L, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781938|pdb|3GTJ|L Chain L, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781951|pdb|3GTK|L Chain L, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781964|pdb|3GTL|L Chain L, Backtracked Rna Polymerase Ii Complex With 13mer With
G<>u Mismatch
gi|239781977|pdb|3GTM|L Chain L, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781991|pdb|3GTO|L Chain L, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782004|pdb|3GTP|L Chain L, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782017|pdb|3GTQ|L Chain L, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104522|pdb|3H3V|M Chain M, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839452|pdb|3HOU|L Chain L, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839467|pdb|3HOU|X Chain X, Complete Rna Polymerase Ii Elongation Complex I With A
T-U Mismatch
gi|254839482|pdb|3HOV|L Chain L, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839497|pdb|3HOW|L Chain L, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839512|pdb|3HOX|L Chain L, Complete Rna Polymerase Ii Elongation Complex V
gi|254839527|pdb|3HOY|L Chain L, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839542|pdb|3HOZ|L Chain L, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471957|pdb|3I4M|L Chain L, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471972|pdb|3I4N|L Chain L, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618776|pdb|3K1F|L Chain L, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914561|pdb|3K7A|L Chain L, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982484|pdb|3M3Y|L Chain L, Rna Polymerase Ii Elongation Complex C
gi|295982497|pdb|3M4O|L Chain L, Rna Polymerase Ii Elongation Complex B
gi|325053974|pdb|3PO2|L Chain L, Arrested Rna Polymerase Ii Elongation Complex
gi|325053989|pdb|3PO3|L Chain L, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634549|pdb|3QT1|L Chain L, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197465|pdb|3RZD|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197477|pdb|3RZO|L Chain L, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197489|pdb|3S14|L Chain L, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197501|pdb|3S15|L Chain L, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197513|pdb|3S16|L Chain L, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197525|pdb|3S17|L Chain L, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197537|pdb|3S1M|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197549|pdb|3S1N|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197561|pdb|3S1Q|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Atp
gi|343197573|pdb|3S1R|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt
3'-Deoxy Rna Soaked With Gtp
gi|343197585|pdb|3S2D|L Chain L, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781206|pdb|3S2H|L Chain L, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380847|pdb|4A3C|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid
gi|359546301|pdb|4A3B|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid
gi|359546319|pdb|4A3D|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid
gi|359546336|pdb|4A3E|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
5nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546353|pdb|4A3F|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
6nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546370|pdb|4A3J|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546387|pdb|4A3K|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid
gi|359546403|pdb|4A3L|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
7nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546420|pdb|4A3M|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
4nt Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977890|pdb|4A3G|L Chain L, Rna Polymerase Ii Initial Transcribing Complex With A
2nt Dna-Rna Hybrid
gi|374977905|pdb|4A3I|L Chain L, Rna Polymerase Ii Binary Complex With Dna
gi|380764990|pdb|4A93|L Chain L, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145457|pdb|4BBR|L Chain L, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145470|pdb|4BBS|L Chain L, Structure Of An Initially Transcribing Rna Polymerase
Ii- Tfiib Complex
gi|733518|gb|AAA64417.1| RNA polymerase I, II and III subunit ABC10 alpha [Saccharomyces
cerevisiae]
gi|2358017|gb|AAB68994.1| Rpb12p: RNA polymerase II subunit [Saccharomyces cerevisiae]
gi|45270988|gb|AAS56875.1| YHR143W-A [Saccharomyces cerevisiae]
gi|190405922|gb|EDV09189.1| RNA polymerase II subunit [Saccharomyces cerevisiae RM11-1a]
gi|256269016|gb|EEU04357.1| Rpc10p [Saccharomyces cerevisiae JAY291]
gi|259146901|emb|CAY80157.1| Rpc10p [Saccharomyces cerevisiae EC1118]
gi|285810050|tpg|DAA06837.1| TPA: Rpc10p [Saccharomyces cerevisiae S288c]
gi|349578695|dbj|GAA23860.1| K7_Rpc10p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298952|gb|EIW10047.1| Rpc10p [Saccharomyces cerevisiae CEN.PK113-7D]
gi|401625368|gb|EJS43378.1| rpc10p [Saccharomyces arboricola H-6]
gi|401841805|gb|EJT44134.1| RPC10-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 70
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>gi|151944090|gb|EDN62383.1| ABC10-alpha [Saccharomyces cerevisiae YJM789]
Length = 70
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>gi|403217299|emb|CCK71794.1| hypothetical protein KNAG_0H03800 [Kazachstania naganishii CBS
8797]
Length = 70
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C+ECG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARSATLKYICAECSAKLSLSKTDPVRCKECGHRILLKTRTKRMVQFEAR 70
>gi|256073839|ref|XP_002573235.1| hypothetical protein [Schistosoma mansoni]
gi|360044726|emb|CCD82274.1| hypothetical protein Smp_132030 [Schistosoma mansoni]
Length = 97
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
+ VSYICG+C EN ++P ++++C ECG+R+LYKKR++R + +
Sbjct: 21 KTVSYICGECRAENEIRPRELVRCLECGHRVLYKKRSKRKMSF 63
>gi|323456568|gb|EGB12435.1| hypothetical protein AURANDRAFT_70664 [Aureococcus anophagefferens]
Length = 1556
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/32 (65%), Positives = 25/32 (78%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYK 39
V Y+CGDCG EN +K D ++CR CGYRILYK
Sbjct: 1149 VKYVCGDCGAENIIKARDAVRCRFCGYRILYK 1180
>gi|443922335|gb|ELU41795.1| DNA directed RNA polymerase, 7 kDa subunit domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 270
Score = 55.5 bits (132), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+ Y+C DCG +N ++P + I+C+ECG+RI+YKKRT R
Sbjct: 107 MDYLCADCGAKNEIRPREPIRCKECGHRIMYKKRTTR 143
>gi|320163080|gb|EFW39979.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 55
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 4 QPEP-VSYICG--DCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
QP+ + YICG +C N LK D I+C CGYRI+YK+RTRR+VQ++AR
Sbjct: 5 QPQTGMYYICGSANCRARNELKQRDAIKCTACGYRIMYKERTRRMVQFQAR 55
>gi|353251644|pdb|3J0K|L Chain L, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 46
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 2 TLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 46
>gi|116195388|ref|XP_001223506.1| hypothetical protein CHGG_04292 [Chaetomium globosum CBS 148.51]
gi|88180205|gb|EAQ87673.1| hypothetical protein CHGG_04292 [Chaetomium globosum CBS 148.51]
Length = 81
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YICGDC L+ G I+C++CG R+LYK+RT+R+VQ+EAR
Sbjct: 38 MHYICGDCSSRVPLEKGTGIRCQKCGARVLYKERTKRMVQFEAR 81
>gi|328350228|emb|CCA36628.1| DNA-directed RNA Polymerase II subunit K [Komagataella pastoris
CBS 7435]
Length = 72
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y CG C +L D ++C+ECG+R++YK RT+R++Q++AR
Sbjct: 29 VKYTCGACAHNFSLNKSDPVRCKECGHRVIYKARTKRMIQFDAR 72
>gi|194753255|ref|XP_001958932.1| GF12628 [Drosophila ananassae]
gi|190620230|gb|EDV35754.1| GF12628 [Drosophila ananassae]
Length = 591
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 15 CGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
C EN ++P D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 555 CHHENEMRPRDPIRCRECGYRIMYKKRTKRLVVFDAR 591
>gi|340522710|gb|EGR52943.1| predicted protein [Trichoderma reesei QM6a]
Length = 78
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++YICGDCG TL ++ C C R+LYK+RT+R+VQ+EAR
Sbjct: 35 MTYICGDCGGNVTLSKDALVACPHCAGRVLYKERTKRMVQFEAR 78
>gi|261191827|ref|XP_002622321.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis SLH14081]
gi|239589637|gb|EEQ72280.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis SLH14081]
gi|239608621|gb|EEQ85608.1| metallothionein-I gene transcription activator [Ajellomyces
dermatitidis ER-3]
Length = 78
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQ 47
V+Y+CGDC ++K GD I+C+ECG+R+LYK+RT+ +Q
Sbjct: 31 SVTYVCGDCNSRVSMKRGDQIRCKECGHRVLYKERTKSFLQ 71
>gi|358399918|gb|EHK49255.1| hypothetical protein TRIATDRAFT_143968 [Trichoderma atroviride
IMI 206040]
Length = 79
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++YICGDCG TL ++ C C R+LYK+RT+R+VQ+EAR
Sbjct: 36 MTYICGDCGGNVTLSKDALVACPHCAGRVLYKERTKRMVQFEAR 79
>gi|221221374|gb|ACM09348.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 56
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
D + + +C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 7 DVVAAEMFSLLTECHTENEIKARDPIRCRECGYRIMYKKRTKRLVVFDAR 56
>gi|119629192|gb|EAX08787.1| hCG2040241 [Homo sapiens]
Length = 61
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 36/49 (73%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P++Y C +C EN +K D ++C ECGYRI+YKKRT +V ++A+
Sbjct: 13 PKQQPMAYNCRECHTENDMKSRDPVKCGECGYRIIYKKRTEILVGFDAQ 61
>gi|358386642|gb|EHK24237.1| hypothetical protein TRIVIDRAFT_54347 [Trichoderma virens Gv29-8]
Length = 80
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++YICGDCG TL ++ C C R+LYK+RT+R+VQ+EAR
Sbjct: 37 MTYICGDCGGNVTLSKDALVACPHCAGRVLYKERTKRMVQFEAR 80
>gi|355698131|gb|EHH28679.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4,
partial [Macaca mulatta]
Length = 54
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
P+ +P+ YICG EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 10 PKQQPMIYICGVYHTENEIKSRDPIRCRECGYRIMYKKRTKRCI 53
>gi|408395310|gb|EKJ74492.1| hypothetical protein FPSE_05242 [Fusarium pseudograminearum
CS3096]
Length = 72
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+SY+CGDCG TL ++ C C RILYK+RT+R+VQ+EAR
Sbjct: 29 MSYLCGDCGGSVTLGKDALVACPHCAGRILYKERTKRMVQFEAR 72
>gi|350638254|gb|EHA26610.1| hypothetical protein ASPNIDRAFT_171344 [Aspergillus niger ATCC
1015]
Length = 120
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 33/39 (84%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
V+Y+CG+C +LK GD I+C+ECG+R+LYK+RT+R+V
Sbjct: 31 VAYLCGECNSRVSLKRGDQIRCKECGHRVLYKERTKRLV 69
>gi|85082466|ref|XP_956919.1| hypothetical protein NCU04508 [Neurospora crassa OR74A]
gi|336270882|ref|XP_003350200.1| hypothetical protein SMAC_01092 [Sordaria macrospora k-hell]
gi|28918000|gb|EAA27683.1| predicted protein [Neurospora crassa OR74A]
gi|336471123|gb|EGO59284.1| hypothetical protein NEUTE1DRAFT_99462 [Neurospora tetrasperma
FGSC 2508]
gi|350292210|gb|EGZ73405.1| hypothetical protein NEUTE2DRAFT_127761 [Neurospora tetrasperma
FGSC 2509]
gi|380095595|emb|CCC07068.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 75
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y CGDC + L+ G I+C++CG R+LYK+RT+R+VQ+EAR
Sbjct: 34 YTCGDCAVRVPLEKGAPIRCQKCGARVLYKERTKRMVQFEAR 75
>gi|342877834|gb|EGU79262.1| hypothetical protein FOXB_10212 [Fusarium oxysporum Fo5176]
Length = 72
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+SYICGDCG TL + C C R+LYK+RT+R+VQ+EAR
Sbjct: 29 MSYICGDCGGSVTLGKDATVACPHCAGRVLYKERTKRMVQFEAR 72
>gi|171691390|ref|XP_001910620.1| hypothetical protein [Podospora anserina S mat+]
gi|170945643|emb|CAP71756.1| unnamed protein product [Podospora anserina S mat+]
Length = 69
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y CGDC + L+ G I+C++CG R+LYK+RTRR+VQ+EAR
Sbjct: 28 YRCGDCAVRVPLEKGAPIRCQKCGARVLYKERTRRMVQFEAR 69
>gi|444315586|ref|XP_004178450.1| hypothetical protein TBLA_0B00880 [Tetrapisispora blattae CBS
6284]
gi|387511490|emb|CCH58931.1| hypothetical protein TBLA_0B00880 [Tetrapisispora blattae CBS
6284]
Length = 70
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSKTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|390601263|gb|EIN10657.1| hypothetical protein PUNSTDRAFT_64752 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 81
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
M + + YIC DCG +N ++ + I+CRECG+RI+YKKRTRR
Sbjct: 20 MPSMKQDMEYICADCGAKNEIRSREPIRCRECGHRIMYKKRTRR 63
>gi|332017567|gb|EGI58267.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Acromyrmex echinatior]
Length = 83
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
YICG+C +N ++ D +CRECGYRI+YKKRT+R
Sbjct: 3 YICGECHHDNEIRAKDATRCRECGYRIMYKKRTKR 37
>gi|367002812|ref|XP_003686140.1| hypothetical protein TPHA_0F02250 [Tetrapisispora phaffii CBS
4417]
gi|357524440|emb|CCE63706.1| hypothetical protein TPHA_0F02250 [Tetrapisispora phaffii CBS
4417]
Length = 70
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARAATLKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|346318716|gb|EGX88318.1| metallothionein-I transcription activator [Cordyceps militaris
CM01]
Length = 77
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Q ++Y+CGDCG +L V+ C C R+LYK+RT+R+VQ+EAR
Sbjct: 30 QRSIMTYLCGDCGGHVSLGKDAVVACPHCAGRVLYKERTKRMVQFEAR 77
>gi|400595965|gb|EJP63753.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Beauveria bassiana ARSEF 2860]
Length = 77
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Q ++Y+CGDCG +L V+ C C R+LYK+RT+R+VQ+EAR
Sbjct: 30 QRSIMTYLCGDCGGHVSLGKDAVVACPHCAGRVLYKERTKRMVQFEAR 77
>gi|322703421|gb|EFY95030.1| hypothetical protein MAA_09479 [Metarhizium anisopliae ARSEF 23]
Length = 576
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++Y+CGDCG +L ++ C C R+LYK+RT+R+VQ+EAR
Sbjct: 533 MTYLCGDCGSSVSLGKDALVACPHCAGRVLYKERTKRMVQFEAR 576
>gi|254585295|ref|XP_002498215.1| ZYRO0G05038p [Zygosaccharomyces rouxii]
gi|238941109|emb|CAR29282.1| ZYRO0G05038p [Zygosaccharomyces rouxii]
Length = 70
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARSATLKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|366992454|ref|XP_003675992.1| hypothetical protein NCAS_0D00470 [Naumovozyma castellii CBS
4309]
gi|342301858|emb|CCC69628.1| hypothetical protein NCAS_0D00470 [Naumovozyma castellii CBS
4309]
Length = 70
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|365989908|ref|XP_003671784.1| hypothetical protein NDAI_0H03680 [Naumovozyma dairenensis CBS
421]
gi|410080394|ref|XP_003957777.1| hypothetical protein KAFR_0F00450 [Kazachstania africana CBS
2517]
gi|343770557|emb|CCD26541.1| hypothetical protein NDAI_0H03680 [Naumovozyma dairenensis CBS
421]
gi|372464364|emb|CCF58642.1| hypothetical protein KAFR_0F00450 [Kazachstania africana CBS
2517]
Length = 70
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|303311223|ref|XP_003065623.1| hypothetical protein CPC735_048480 [Coccidioides posadasii C735
delta SOWgp]
gi|240105285|gb|EER23478.1| hypothetical protein CPC735_048480 [Coccidioides posadasii C735
delta SOWgp]
Length = 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
V Y+CGDC +K GD I+C+ECG+R+LYK+RT+R V
Sbjct: 35 SVIYVCGDCSARVQMKRGDQIRCKECGHRVLYKERTKRSV 74
>gi|340960544|gb|EGS21725.1| hypothetical protein CTHT_0035920 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 80
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Y CGDC + L+ G I+C++CG R+LYK+RT+R+VQ+EAR
Sbjct: 39 YTCGDCAVRVPLEKGAPIRCQKCGARVLYKERTKRMVQFEAR 80
>gi|367015196|ref|XP_003682097.1| hypothetical protein TDEL_0F00750 [Torulaspora delbrueckii]
gi|359749759|emb|CCE92886.1| hypothetical protein TDEL_0F00750 [Torulaspora delbrueckii]
Length = 70
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C+ CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARSATLKYICAECSSKLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
>gi|339245221|ref|XP_003378536.1| conserved domain protein [Trichinella spiralis]
gi|316972546|gb|EFV56219.1| conserved domain protein [Trichinella spiralis]
Length = 101
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
Y+CGDC N ++ D I+CRECGYRILYKKRTR+
Sbjct: 24 YVCGDCQFPNEIRARDPIRCRECGYRILYKKRTRQ 58
>gi|156841739|ref|XP_001644241.1| hypothetical protein Kpol_1051p32 [Vanderwaltozyma polyspora DSM
70294]
gi|156114879|gb|EDO16383.1| hypothetical protein Kpol_1051p32 [Vanderwaltozyma polyspora DSM
70294]
Length = 70
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|336373437|gb|EGO01775.1| hypothetical protein SERLA73DRAFT_29241 [Serpula lacrymans var.
lacrymans S7.3]
Length = 51
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P + + YIC DCG +N +K + I+CRECG+RI+YKKRT+R
Sbjct: 8 PPRQDMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 49
>gi|255711588|ref|XP_002552077.1| KLTH0B06622p [Lachancea thermotolerans]
gi|238933455|emb|CAR21639.1| KLTH0B06622p [Lachancea thermotolerans CBS 6340]
Length = 70
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSRTDPVRCKDCGHRILLKARTKRMVQFEAR 70
>gi|353235255|emb|CCA67271.1| hypothetical protein PIIN_01104 [Piriformospora indica DSM 11827]
Length = 72
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 15 CGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
CG+EN ++P + I+C+ CG+RI+YKKRT ++VQ+EAR
Sbjct: 36 CGVENDIRPREPIRCKACGHRIMYKKRTSKMVQFEAR 72
>gi|328870951|gb|EGG19323.1| RNA polymerase [Dictyostelium fasciculatum]
Length = 67
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P YICG+CG EN +KP + I+C++C YRI+YKKRT +
Sbjct: 2 PCIYICGECGSENEIKPKEPIKCKDCTYRIMYKKRTDK 39
>gi|322696751|gb|EFY88539.1| metallothionein-I gene transcription activator [Metarhizium
acridum CQMa 102]
Length = 77
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
++Y+CGDCG +L ++ C C R+LYK+RT+R+VQ+EAR
Sbjct: 34 MTYLCGDCGSSVSLGKDALVACPHCAGRVLYKERTKRMVQFEAR 77
>gi|363754767|ref|XP_003647599.1| hypothetical protein Ecym_6409 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891236|gb|AET40782.1| hypothetical protein Ecym_6409 [Eremothecium cymbalariae
DBVPG#7215]
Length = 70
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C+ CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSKLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
>gi|294886315|ref|XP_002771664.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239875370|gb|EER03480.1| DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 91
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTR-RIVQYEAR 51
V+Y+CG+CG +KP D ++CRECG+RILYK R + R YEAR
Sbjct: 46 AVTYLCGECGAYVDIKPHDAVRCRECGHRILYKLRQKQRPCVYEAR 91
>gi|50306889|ref|XP_453420.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642554|emb|CAH00516.1| KLLA0D08008p [Kluyveromyces lactis]
Length = 70
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C +L D ++C+ CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSSRLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
>gi|451847986|gb|EMD61292.1| hypothetical protein COCSADRAFT_96768 [Cochliobolus sativus
ND90Pr]
Length = 61
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+D V Y CGDC M+ LK G+ I+CR CG+R+LYK+RT R
Sbjct: 18 VDATARTVHYKCGDCDMDVPLKRGEPIRCRNCGHRVLYKQRTNR 61
>gi|154318325|ref|XP_001558481.1| predicted protein [Botryotinia fuckeliana B05.10]
Length = 106
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRI 45
+ Y+CGDC LK GD I+C+ECG+R+LYK+RT R+
Sbjct: 35 IKYLCGDCNASVMLKRGDPIRCKECGHRVLYKERTSRL 72
>gi|160330979|ref|XP_001712197.1| rpc10 [Hemiselmis andersenii]
gi|159765644|gb|ABW97872.1| rpc10 [Hemiselmis andersenii]
Length = 44
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YICG+CG +N + I C CG RILYK RT++I+ YEAR
Sbjct: 1 MEYICGECGGKNEISFSQTISCVFCGTRILYKTRTKKILGYEAR 44
>gi|399219004|emb|CCF75891.1| unnamed protein product [Babesia microti strain RI]
Length = 66
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
D EPV+YIC +CG + L+P ++CR CG RILYK R+ +
Sbjct: 9 DENLEPVTYICSECGKDVVLQPVAAVRCRNCGSRILYKNRSHK 51
>gi|45198544|ref|NP_985573.1| AFR026Cp [Ashbya gossypii ATCC 10895]
gi|44984495|gb|AAS53397.1| AFR026Cp [Ashbya gossypii ATCC 10895]
gi|374108802|gb|AEY97708.1| FAFR026Cp [Ashbya gossypii FDAG1]
Length = 70
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +C + +L D ++C+ CG+RIL K RT+R+VQ+EAR
Sbjct: 27 LKYICAECSGKLSLSRTDPVRCKNCGHRILLKARTKRMVQFEAR 70
>gi|210075559|ref|XP_502037.2| YALI0C20075p [Yarrowia lipolytica]
gi|199425307|emb|CAG82357.2| YALI0C20075p [Yarrowia lipolytica CLIB122]
Length = 73
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 2 DPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + V Y+C +C + L GD ++C+ECG+R+LYK+R VQ+ AR
Sbjct: 24 NNKSYAVKYLCANCSSKVVLIRGDPVRCKECGHRVLYKERANYTVQFSAR 73
>gi|330798884|ref|XP_003287479.1| hypothetical protein DICPUDRAFT_32553 [Dictyostelium purpureum]
gi|325082498|gb|EGC35978.1| hypothetical protein DICPUDRAFT_32553 [Dictyostelium purpureum]
Length = 56
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P YICG+CG E+ +KP + ++C++C YRI+YKKRT +
Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTYRIMYKKRTDK 39
>gi|399950021|gb|AFP65677.1| DNA-directed RNA polymerases I, II and III [Chroomonas
mesostigmatica CCMP1168]
Length = 44
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +CG ++ + G + C CG RILYKKRT+ I+ YEAR
Sbjct: 1 MEYICSECGGKSEITIGQTVSCSFCGNRILYKKRTKEILVYEAR 44
>gi|169608305|ref|XP_001797572.1| hypothetical protein SNOG_07223 [Phaeosphaeria nodorum SN15]
gi|160701616|gb|EAT85874.2| hypothetical protein SNOG_07223 [Phaeosphaeria nodorum SN15]
Length = 60
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+D V Y CGDC + LK G+ I+CR CG+R+LYK+RT R
Sbjct: 17 IDASARTVHYKCGDCDQDVPLKRGEPIRCRNCGHRVLYKQRTNR 60
>gi|156053117|ref|XP_001592485.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154704504|gb|EDO04243.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRI 45
+ Y+CGDC LK GD I+C+ECG+R+LYK+RT +
Sbjct: 35 IKYLCGDCNASVMLKRGDPIRCKECGHRVLYKERTSSL 72
>gi|255947560|ref|XP_002564547.1| Pc22g05120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591564|emb|CAP97800.1| Pc22g05120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 70
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
V+Y+CG+C LK GD I+C++CG+R+LYK+RT+R
Sbjct: 34 VTYLCGECSARVPLKRGDQIRCKDCGHRVLYKERTKR 70
>gi|425766146|gb|EKV04772.1| Hypothetical protein PDIP_86130 [Penicillium digitatum Pd1]
gi|425774548|gb|EKV12851.1| Metallothionein-I transcription activator [Penicillium digitatum
PHI26]
Length = 71
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
V+Y+CG+C LK GD I+C++CG+R+LYK+RT+R
Sbjct: 35 VTYLCGECSARVPLKRGDQIRCKDCGHRVLYKERTKR 71
>gi|70993574|ref|XP_751634.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus Af293]
gi|66849268|gb|EAL89596.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus Af293]
gi|159125442|gb|EDP50559.1| metallothionein-I gene transcription activator [Aspergillus
fumigatus A1163]
Length = 76
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTR 43
V+Y+CG+C +LK GD I+C++CG+R+LYK+RT+
Sbjct: 32 VAYLCGECNARVSLKRGDQIRCKDCGHRVLYKERTK 67
>gi|378754660|gb|EHY64690.1| hypothetical protein NERG_02309 [Nematocida sp. 1 ERTm2]
Length = 51
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
M+ + SY C +C L P D ++C ECG+RILYK R+ + QYEA
Sbjct: 1 MNEEERKCSYQCSECNKIAILGPKDAVRCVECGHRILYKIRSNQWTQYEA 50
>gi|402217522|gb|EJT97602.1| hypothetical protein DACRYDRAFT_58737 [Dacryopinax sp. DJM-731
SS1]
Length = 49
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
+ Y+C DCG +N + P I+C ECG+RI+YKKRT++
Sbjct: 9 LEYLCADCGAKNHIVPRQPIKCMECGHRIMYKKRTKK 45
>gi|254565403|ref|XP_002489812.1| RNA polymerase subunit, found in RNA polymerase complexes I, II,
and III [Komagataella pastoris GS115]
gi|238029608|emb|CAY67531.1| RNA polymerase subunit, found in RNA polymerase complexes I, II,
and III [Komagataella pastoris GS115]
Length = 73
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
V Y CG C +L D ++C+ECG+R++YK RT+R+ ++
Sbjct: 29 VKYTCGACAHNFSLNKSDPVRCKECGHRVIYKARTKRMSKF 69
>gi|387592543|gb|EIJ87567.1| hypothetical protein NEQG_02114 [Nematocida parisii ERTm3]
gi|387595169|gb|EIJ92794.1| hypothetical protein NEPG_02193 [Nematocida parisii ERTm1]
Length = 51
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
M+ + SY C +C L P D ++C +CG+RILYK R+ + QYEA
Sbjct: 1 MNEEERKCSYQCSECNKIAILGPKDAVRCVQCGHRILYKIRSNQWTQYEA 50
>gi|426198384|gb|EKV48310.1| hypothetical protein AGABI2DRAFT_191935 [Agaricus bisporus var.
bisporus H97]
Length = 74
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40
P + + YIC DCG +N +K + I+CRECG+RI+YKK
Sbjct: 21 PPRQDLEYICADCGAKNEIKSREPIRCRECGHRIMYKK 58
>gi|221220904|gb|ACM09113.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Salmo
salar]
Length = 115
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 14 DCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 51 ECHTENEIKARDPIRCRECGYRIMYKKRTKRCI 83
>gi|430812217|emb|CCJ30370.1| unnamed protein product [Pneumocystis jirovecii]
Length = 61
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40
+P +SY+C DCG N ++ +VI+CRECG+R++ +K
Sbjct: 21 FTARPVQMSYLCADCGAVNQIQAREVIRCRECGHRVIIQK 60
>gi|169612337|ref|XP_001799586.1| hypothetical protein SNOG_09289 [Phaeosphaeria nodorum SN15]
gi|111062361|gb|EAT83481.1| hypothetical protein SNOG_09289 [Phaeosphaeria nodorum SN15]
Length = 290
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 27/31 (87%)
Query: 21 LKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+K G+ I+C+ECG+R +YK+RT R+VQ+EAR
Sbjct: 260 IKQGEPIRCKECGFRSVYKRRTNRMVQFEAR 290
>gi|326429075|gb|EGD74645.1| hypothetical protein PTSG_06010 [Salpingoeca sp. ATCC 50818]
Length = 58
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
Q + YICG CG ++ D + C CG+RILYK RT R VQ R
Sbjct: 11 QQVAMEYICGSCGRRTRIRQMDSLACTNCGHRILYKPRTARPVQVNCR 58
>gi|281350422|gb|EFB26006.1| hypothetical protein PANDA_001870 [Ailuropoda melanoleuca]
Length = 35
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 14 DCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
+C EN +K D I+CRECGYRI+YKKRT+R +
Sbjct: 1 ECHTENEIKSRDPIRCRECGYRIMYKKRTKRCI 33
>gi|330038772|ref|XP_003239696.1| DNA-directed RNA polymerases I, II and III [Cryptomonas
paramecium]
gi|327206620|gb|AEA38798.1| DNA-directed RNA polymerases I, II and III [Cryptomonas
paramecium]
Length = 44
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ Y C +CG+ N + G+ + C+ CG RILYK R I++YEA+
Sbjct: 1 MDYYCSECGLVNQVNAGESVICKYCGARILYKIRPNAILEYEAK 44
>gi|162606330|ref|XP_001713195.1| DNA-directed RNA polymerases I, II and III [Guillardia theta]
gi|4583672|emb|CAB40410.1| DNA-directed RNA polymerases I, II and III [Guillardia theta]
Length = 73
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ YIC +CGM + + C+ CG RILYKKR+ +V+Y AR
Sbjct: 26 EMEYICSECGMLINISDLTSLTCKSCGCRILYKKRSDEVVEYIAR 70
>gi|167522132|ref|XP_001745404.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776362|gb|EDQ89982.1| predicted protein [Monosiga brevicollis MX1]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
Y+CG+C N +K G I CR CG+RILYK RT R
Sbjct: 25 YVCGECRNPNQIKAGGDINCRNCGHRILYKLRTER 59
>gi|307207023|gb|EFN84846.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Harpegnathos saltator]
Length = 38
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 12 CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYE 49
C +C +N ++ D I+CRECGYRI+YKKRT+R + +
Sbjct: 1 CLECHNDNEIRQKDPIRCRECGYRIMYKKRTKRCILFN 38
>gi|392512878|emb|CCI73989.1| ECU10_1045 [Encephalitozoon cuniculi GB-M1]
Length = 51
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
MD + + +Y+C C LK D I+C ECG R+L KKRT +VQ +A
Sbjct: 1 MDQEQKVFTYVCIQCPSLRELKLKDPIRCTECGNRVLRKKRTDEVVQLDA 50
>gi|402083731|gb|EJT78749.1| hypothetical protein GGTG_03847 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 85
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ D E LK D I+C ECG R+LYK RT R++++EAR
Sbjct: 43 PLISTHTDATFE--LKRADAIRCTECGCRVLYKNRTNRMIEFEAR 85
>gi|358059807|dbj|GAA94453.1| hypothetical protein E5Q_01105 [Mixia osmundae IAM 14324]
Length = 136
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
++Y C DCG +N ++P I+C CG RI++KKR +++
Sbjct: 27 LAYSCADCGQDNNIEPKAPIRCNHCGCRIVFKKRGKKMA 65
>gi|307190742|gb|EFN74644.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Camponotus floridanus]
Length = 35
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 14 DCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQY 48
+C +N ++ D I+CRECGYRI+YKKRT+R + +
Sbjct: 1 ECHHDNEIRSKDPIRCRECGYRIMYKKRTKRRILF 35
>gi|330913451|ref|XP_003296286.1| hypothetical protein PTT_05784 [Pyrenophora teres f. teres 0-1]
gi|311331700|gb|EFQ95619.1| hypothetical protein PTT_05784 [Pyrenophora teres f. teres 0-1]
Length = 238
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 11 ICGDCGMENTLKPG--DVIQCRECGYRILYKKRTRRIVQYEAR 51
I G + N L G + ++CR+CG RIL KKRTRR VQ+EAR
Sbjct: 196 IRGGGQVRNNLSGGSMETLRCRDCGCRILLKKRTRRAVQFEAR 238
>gi|401885244|gb|EJT49367.1| hypothetical protein A1Q1_01569 [Trichosporon asahii var. asahii
CBS 2479]
gi|406694770|gb|EKC98092.1| hypothetical protein A1Q2_07638 [Trichosporon asahii var. asahii
CBS 8904]
Length = 78
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 13/55 (23%)
Query: 3 PQPEPVS-YICG------------DCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
P+P S Y+CG DCG + +K G++I+CRECG+R++YK RT +
Sbjct: 21 PKPTDASEYLCGGELQGGVEADRADCGAKTQIKMGELIRCRECGHRVMYKPRTHK 75
>gi|145480797|ref|XP_001426421.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145542464|ref|XP_001456919.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393496|emb|CAK59023.1| unnamed protein product [Paramecium tetraurelia]
gi|124424733|emb|CAK89522.1| unnamed protein product [Paramecium tetraurelia]
Length = 54
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT---RRIVQYEA 50
V YICG CG + L+ D+++C +CGYRILYKKR + QYEA
Sbjct: 9 VVYICGKCGKDVQLEAKDIVRC-QCGYRILYKKRKADPKNPPQYEA 53
>gi|367044838|ref|XP_003652799.1| hypothetical protein THITE_2114571 [Thielavia terrestris NRRL
8126]
gi|347000061|gb|AEO66463.1| hypothetical protein THITE_2114571 [Thielavia terrestris NRRL
8126]
Length = 79
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
Y+CGDC + L+ G I+C++CG R+LYK+RT+R
Sbjct: 45 YLCGDCAVRVPLEKGAPIRCQKCGARVLYKERTKR 79
>gi|340897373|gb|EGS16963.1| hypothetical protein CTHT_0072870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 134
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
V Y C DCG E + ++C CG RI+ K+R R+++QY A
Sbjct: 91 VYYTCKDCGAEEGFEANQQLRCDNCGGRIMMKQRKRKVMQYHA 133
>gi|161899323|ref|XP_001712888.1| DNA-directed RNA polymerases I, II and III [Bigelowiella natans]
gi|75756382|gb|ABA27276.1| DNA-directed RNA polymerases I, II and III [Bigelowiella natans]
Length = 57
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
Q + Y+CG CG N + D I C C + IL+KKR+ R+ + +A
Sbjct: 9 KQKTYLEYVCGKCGATNEISIKDNIICNICHFNILFKKRSIRVKKIQA 56
>gi|302886715|ref|XP_003042247.1| hypothetical protein NECHADRAFT_9972 [Nectria haematococca mpVI
77-13-4]
gi|256723156|gb|EEU36534.1| hypothetical protein NECHADRAFT_9972 [Nectria haematococca mpVI
77-13-4]
Length = 65
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIV 46
++Y+CGDCG TL ++ C C R+LYK+RT+R V
Sbjct: 27 MTYLCGDCGGSVTLGKDALVACPHCAGRVLYKERTKRQV 65
>gi|396495824|ref|XP_003844639.1| hypothetical protein LEMA_uP022900.1 [Leptosphaeria maculans JN3]
gi|312221219|emb|CBY01160.1| hypothetical protein LEMA_uP022900.1 [Leptosphaeria maculans JN3]
Length = 57
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 25 DVIQCRECGYRILYKKRTRRIVQYEAR 51
D ++CRECG R ++KKRT R+VQ+EAR
Sbjct: 31 DAMRCRECGCRAMWKKRTERMVQFEAR 57
>gi|345800561|ref|XP_003434715.1| PREDICTED: uncharacterized protein LOC100682614 [Canis lupus
familiaris]
Length = 119
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 3 PQPEPVSYICGDCGM--ENTLKPGDVIQCR-ECGYRILYKKRTRRIVQYEA 50
P+ +P+ YICG+C M N ++ + + E GYRI+YK+RT+R+V + A
Sbjct: 19 PKQQPMVYICGECHMVKWNKIQGSNQMDADVESGYRIMYKRRTKRLVIWGA 69
>gi|281337929|gb|EFB13513.1| hypothetical protein PANDA_019018 [Ailuropoda melanoleuca]
Length = 52
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 42
+PV I G C EN +K I+CREC RI+YKK+T
Sbjct: 13 QPVILIHGKCHTENKIKSRYPIKCRECENRIIYKKKT 49
>gi|449015661|dbj|BAM79063.1| DNA-directed RNA polymerase subunit CX [Cyanidioschyzon merolae
strain 10D]
Length = 45
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 10 YICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
YICG+CG L + ++C C R +YK RT++ +Q EAR
Sbjct: 4 YICGECGQIFELDVNETVRCNFCSCRYVYKLRTKKPIQLEAR 45
>gi|116181022|ref|XP_001220360.1| predicted protein [Chaetomium globosum CBS 148.51]
gi|88185436|gb|EAQ92904.1| predicted protein [Chaetomium globosum CBS 148.51]
Length = 147
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y+C CG+ D+++C CG ++K R ++I QY A
Sbjct: 104 VPYLCAACGVVTRFTANDMLRCVNCGGWTMHKPRVKQISQYPAN 147
>gi|154418231|ref|XP_001582134.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121916367|gb|EAY21148.1| hypothetical protein TVAG_283180 [Trichomonas vaginalis G3]
Length = 58
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 6 EPVS-YICGDCG----MENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
EP S YIC DCG + N K ++I+C+ C +L KKR R +Q +A
Sbjct: 8 EPTSEYICVDCGATVNIPNGTKDSNLIKCKMCSCNLLVKKRPERSIQVDA 57
>gi|402471218|gb|EJW05075.1| hypothetical protein EDEG_00856 [Edhazardia aedis USNM 41457]
Length = 51
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
M +P YIC DC E +L+ ++C C RI K R QY AR
Sbjct: 1 MSDITQPTMYICYDCKREQSLQNKTAVKCEYCSCRIFIKPRNSIPTQYLAR 51
>gi|270011781|gb|EFA08229.1| hypothetical protein TcasGA2_TC005856 [Tribolium castaneum]
Length = 97
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCREC 32
P+ YICG+C EN ++P D I+CREC
Sbjct: 15 PMVYICGECHNENEIRPRDPIRCREC 40
>gi|367019540|ref|XP_003659055.1| hypothetical protein MYCTH_2039938, partial [Myceliophthora
thermophila ATCC 42464]
gi|347006322|gb|AEO53810.1| hypothetical protein MYCTH_2039938, partial [Myceliophthora
thermophila ATCC 42464]
Length = 147
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
E V YICG C + + K D+++C CG ++K R ++
Sbjct: 104 EKVYYICGSCNLLSGFKSNDMLRCLNCGGMTMFKPRVKK 142
>gi|189190184|ref|XP_001931431.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973037|gb|EDU40536.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 281
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 25 DVIQCRECGYRILYKKRTRRIVQYEAR 51
++++CRECG RIL KK TRR +Q+EAR
Sbjct: 256 EMLRCRECGCRILLKK-TRRAMQFEAR 281
>gi|226290156|gb|EEH45640.1| metallothionein-I gene transcription activator [Paracoccidioides
brasiliensis Pb18]
Length = 111
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYR 35
V Y+CGDC ++K GD I+C+ECG++
Sbjct: 31 SVVYVCGDCNSRVSMKRGDQIRCKECGHQ 59
>gi|159111367|ref|XP_001705915.1| RNA polymerase II subunit Rpb12 [Giardia lamblia ATCC 50803]
gi|21842232|gb|AAM77742.1|AF510650_1 RNA polymerase II subunit Rpb12 [Giardia intestinalis]
gi|157434006|gb|EDO78241.1| RNA polymerase II subunit Rpb12 [Giardia lamblia ATCC 50803]
Length = 54
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1 MDPQPE--PVSYICGDCGMENTLKPGDVIQCR-ECGYRILYKKRTRRIVQYEA 50
M+P E PV YIC CG E I C +++LYKKR R + Y+A
Sbjct: 1 MEPAGENQPVVYICATCGCETNPHMDGTIHCNTNPNHKVLYKKRASRPLVYKA 53
>gi|308162192|gb|EFO64601.1| RNA polymerase II subunit Rpb12 [Giardia lamblia P15]
Length = 54
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1 MDPQPE--PVSYICGDCGMENTLKPGDVIQCR-ECGYRILYKKRTRRIVQYEA 50
M+P E PV YIC CG E I C +++LYKKR R + Y+A
Sbjct: 1 MEPAGENQPVVYICATCGCETNPHMDGTIHCSTNPNHKVLYKKRASRPLVYKA 53
>gi|123454823|ref|XP_001315161.1| DNA-directed RNA polymerasese [Trichomonas vaginalis G3]
gi|121897829|gb|EAY02938.1| DNA-directed RNA polymerasese, putative [Trichomonas vaginalis
G3]
Length = 47
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
V Y C +CG + ++C +CG ILYKKRT + + + AR
Sbjct: 4 VEYNCSNCGKTVRAEDRGAMRCPQCGCNILYKKRTTKRITFSAR 47
>gi|47846259|emb|CAG30773.1| putative RNA polymerase II [Eucalyptus globulus subsp. globulus]
Length = 17
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 35 RILYKKRTRRIVQYEAR 51
RILYKKRTRRI+QYEAR
Sbjct: 1 RILYKKRTRRIIQYEAR 17
>gi|448432231|ref|ZP_21585367.1| IS1341-type transposase (TCE32) [Halorubrum tebenquichense DSM
14210]
gi|445687115|gb|ELZ39407.1| IS1341-type transposase (TCE32) [Halorubrum tebenquichense DSM
14210]
Length = 452
Score = 34.7 bits (78), Expect = 7.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 9 SYICGDCGMENTLKPGDVIQCRECGY 34
S C DCG EN + GD++ C +CG+
Sbjct: 348 SSTCPDCGSENIHREGDLLTCYDCGF 373
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.143 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 892,602,416
Number of Sequences: 23463169
Number of extensions: 25073828
Number of successful extensions: 59945
Number of sequences better than 100.0: 315
Number of HSP's better than 100.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 59627
Number of HSP's gapped (non-prelim): 316
length of query: 51
length of database: 8,064,228,071
effective HSP length: 24
effective length of query: 27
effective length of database: 7,501,112,015
effective search space: 202530024405
effective search space used: 202530024405
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 69 (31.2 bits)