BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035461
(51 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc10 PE=1 SV=2
Length = 63
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+P + Y+C DCG NT++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus
musculus GN=Polr2k PE=2 SV=2
Length = 58
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC4
OS=Homo sapiens GN=POLR2K PE=2 SV=1
Length = 58
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos
taurus GN=POLR2K PE=3 SV=1
Length = 58
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P+ +P+ YICG+C EN +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc4
OS=Dictyostelium discoideum GN=polr2k PE=3 SV=1
Length = 46
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
P YICG+CG E+ +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
>sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC4
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=RPC10 PE=1 SV=1
Length = 70
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
+ + YIC +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 22 ARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>sp|O13775|SYEC_SCHPO Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1
SV=1
Length = 716
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRIL 37
+ PQ E S + D G++N LK GD+IQ GY I+
Sbjct: 654 LTPQTEFHSPVFADVGIKN-LKKGDIIQVERKGYYIV 689
>sp|Q57959|SYK_METJA Lysine--tRNA ligase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=lysS PE=3 SV=2
Length = 530
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 DPQPEPVSYICGDCGMENTLKP 23
D + E ++Y C CG ENT+KP
Sbjct: 185 DSEKEEITYRCEICGFENTVKP 206
>sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl40e PE=3 SV=1
Length = 53
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 11 ICGDCGMENTLKPGDVIQCRECGYRILYKKRTRR 44
IC +CG +N P D ++CR C R L KR R+
Sbjct: 22 ICRECGAKN---PPDAVKCRRCRSRNLRPKRFRK 52
>sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rpoP PE=3 SV=1
Length = 44
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEA 50
+SY C C + L ++C CG+R+L K+R+R I + E
Sbjct: 1 MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDIKEVEV 43
>sp|Q8TYC4|RPOP_METKA DNA-directed RNA polymerase subunit P OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=rpoP PE=3 SV=1
Length = 51
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 4 QPEPVSYICGDCGMENTLKPG-DVIQCRECGYRILYKKRTRRIVQYEAR 51
+ E YIC CG + L D I+C CG+R++ K R +Y+AR
Sbjct: 3 EEEKYEYICMRCGKKVRLDINEDPIRCTHCGFRLVMKPRHPVPRRYKAR 51
>sp|Q8HYB7|PERT_CANFA Thyroid peroxidase OS=Canis familiaris GN=TPO PE=2 SV=2
Length = 944
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 15 CGMENTLKPGDVIQCRECGYRIL 37
CG+ ++L GDV+ C E G R+L
Sbjct: 750 CGLPDSLDNGDVVLCGEAGRRVL 772
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,566,578
Number of Sequences: 539616
Number of extensions: 620243
Number of successful extensions: 1525
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 27
length of query: 51
length of database: 191,569,459
effective HSP length: 24
effective length of query: 27
effective length of database: 178,618,675
effective search space: 4822704225
effective search space used: 4822704225
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)