Query 035461
Match_columns 51
No_of_seqs 102 out of 204
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_L DNA-directed RNA polyme 99.9 1.3E-27 4.3E-32 133.6 0.9 49 3-51 15-63 (63)
2 1twf_L ABC10-alpha, DNA-direct 99.9 6E-25 2.1E-29 124.3 1.8 47 5-51 24-70 (70)
3 4ayb_P DNA-directed RNA polyme 99.7 9.1E-18 3.1E-22 89.6 2.5 42 9-50 3-47 (48)
4 2lcq_A Putative toxin VAPC6; P 97.9 5.1E-06 1.8E-10 50.7 2.7 35 7-42 130-164 (165)
5 2kdx_A HYPA, hydrogenase/ureas 97.7 1.4E-05 4.7E-10 47.1 2.1 34 5-39 69-103 (119)
6 2gmg_A Hypothetical protein PF 97.1 8.6E-05 2.9E-09 44.4 0.1 33 8-40 66-98 (105)
7 3a43_A HYPD, hydrogenase nicke 97.1 0.00025 8.4E-09 43.1 2.1 35 5-39 66-120 (139)
8 3na7_A HP0958; flagellar bioge 96.6 0.001 3.4E-08 43.1 2.2 31 11-42 200-237 (256)
9 6rxn_A Rubredoxin; electron tr 95.9 0.0035 1.2E-07 32.3 1.8 27 9-35 4-39 (46)
10 1vq8_Z 50S ribosomal protein L 95.9 0.0034 1.2E-07 35.7 1.8 31 6-36 24-55 (83)
11 3pwf_A Rubrerythrin; non heme 95.8 0.0072 2.5E-07 37.6 3.0 27 6-34 135-161 (170)
12 3j21_g 50S ribosomal protein L 95.3 0.0068 2.3E-07 32.0 1.4 28 8-38 13-40 (51)
13 1lko_A Rubrerythrin all-iron(I 95.2 0.011 3.8E-07 37.0 2.4 27 8-35 154-180 (191)
14 1dxg_A Desulforedoxin; non-hem 95.0 0.03 1E-06 27.0 3.1 26 7-34 4-31 (36)
15 1gh9_A 8.3 kDa protein (gene M 94.6 0.021 7.1E-07 31.7 2.2 34 8-43 3-37 (71)
16 1yuz_A Nigerythrin; rubrythrin 94.4 0.031 1E-06 35.5 3.0 28 6-35 168-195 (202)
17 2v3b_B Rubredoxin 2, rubredoxi 93.9 0.04 1.4E-06 29.0 2.3 27 9-35 3-45 (55)
18 1yk4_A Rubredoxin, RD; electro 93.7 0.056 1.9E-06 28.1 2.7 27 9-35 2-44 (52)
19 1vd4_A Transcription initiatio 93.2 0.15 5E-06 25.4 3.8 32 7-38 12-51 (62)
20 1pft_A TFIIB, PFTFIIBN; N-term 93.2 0.042 1.4E-06 27.6 1.6 27 9-35 5-33 (50)
21 4gzn_C ZFP-57, zinc finger pro 93.0 0.093 3.2E-06 27.0 2.8 28 9-36 4-42 (60)
22 2k2d_A Ring finger and CHY zin 92.9 0.094 3.2E-06 29.3 3.0 30 6-35 34-64 (79)
23 2kn9_A Rubredoxin; metalloprot 92.9 0.063 2.1E-06 30.5 2.2 27 8-34 26-68 (81)
24 1e8j_A Rubredoxin; iron-sulfur 92.8 0.061 2.1E-06 28.0 2.0 27 9-35 3-45 (52)
25 2k4x_A 30S ribosomal protein S 92.7 0.053 1.8E-06 28.5 1.7 34 8-41 17-51 (55)
26 1dx8_A Rubredoxin; electron tr 92.7 0.072 2.5E-06 29.3 2.2 28 8-35 6-49 (70)
27 2zet_C Melanophilin; complex, 92.7 0.074 2.5E-06 32.8 2.5 28 9-36 68-95 (153)
28 1s24_A Rubredoxin 2; electron 92.6 0.066 2.2E-06 30.8 2.1 27 8-34 34-76 (87)
29 3m7n_A Putative uncharacterize 92.6 0.067 2.3E-06 33.1 2.2 31 6-37 137-167 (179)
30 2akl_A PHNA-like protein PA012 92.3 0.048 1.6E-06 33.9 1.3 26 10-35 28-53 (138)
31 3uk3_C Zinc finger protein 217 92.2 0.065 2.2E-06 25.4 1.5 29 8-36 3-42 (57)
32 4rxn_A Rubredoxin; electron tr 92.1 0.099 3.4E-06 27.6 2.2 27 9-35 3-45 (54)
33 2epq_A POZ-, at HOOK-, and zin 92.1 0.034 1.2E-06 25.6 0.4 26 8-33 9-45 (45)
34 1zbd_B Rabphilin-3A; G protein 92.0 0.12 4E-06 31.3 2.7 27 10-36 56-82 (134)
35 1ltl_A DNA replication initiat 92.0 0.1 3.5E-06 33.9 2.6 30 7-36 132-166 (279)
36 2ayj_A 50S ribosomal protein L 91.7 0.11 3.7E-06 27.9 2.1 27 8-37 18-44 (56)
37 1bbo_A Human enhancer-binding 91.6 0.082 2.8E-06 25.1 1.4 27 10-36 2-39 (57)
38 2jrp_A Putative cytoplasmic pr 91.4 0.11 3.8E-06 29.5 2.1 25 8-36 17-41 (81)
39 3j20_Y 30S ribosomal protein S 91.4 0.2 6.8E-06 25.8 2.9 26 11-36 21-47 (50)
40 1x5w_A Zinc finger protein 64, 91.3 0.18 6E-06 25.1 2.6 29 8-36 8-47 (70)
41 2adr_A ADR1; transcription reg 91.1 0.1 3.5E-06 25.0 1.5 27 10-36 3-40 (60)
42 1x6e_A Zinc finger protein 24; 91.1 0.2 6.9E-06 25.0 2.7 30 7-36 12-52 (72)
43 2lv2_A Insulinoma-associated p 90.2 0.21 7.3E-06 27.2 2.5 29 8-36 27-66 (85)
44 2yt9_A Zinc finger-containing 89.7 0.41 1.4E-05 24.6 3.3 13 8-20 6-18 (95)
45 2lce_A B-cell lymphoma 6 prote 89.5 0.16 5.6E-06 25.4 1.5 31 6-36 14-55 (74)
46 2eod_A TNF receptor-associated 89.4 0.45 1.5E-05 23.4 3.2 30 8-38 9-49 (66)
47 1llm_C Chimera of ZIF23-GCN4; 89.1 0.38 1.3E-05 24.8 2.9 28 9-36 3-41 (88)
48 2csz_A Synaptotagmin-like prot 89.1 0.13 4.6E-06 28.9 1.1 30 7-36 23-52 (76)
49 2d9k_A FLN29 gene product; zin 89.0 0.19 6.7E-06 26.3 1.7 30 8-37 16-54 (75)
50 2kmk_A Zinc finger protein GFI 89.0 0.39 1.3E-05 23.9 2.8 27 9-35 29-66 (82)
51 2epr_A POZ-, at HOOK-, and zin 88.9 0.18 6.1E-06 23.5 1.3 28 7-34 10-48 (48)
52 3flo_B DNA polymerase alpha ca 88.8 0.45 1.5E-05 30.6 3.6 32 5-36 18-59 (206)
53 2drp_A Protein (tramtrack DNA- 88.6 0.52 1.8E-05 22.8 3.0 29 8-36 9-50 (66)
54 3jyw_9 60S ribosomal protein L 88.6 0.15 5.1E-06 28.4 1.0 30 7-36 24-54 (72)
55 2jvm_A Uncharacterized protein 88.5 0.3 1E-05 27.7 2.3 18 23-40 50-67 (80)
56 2con_A RUH-035 protein, NIN on 88.4 0.61 2.1E-05 26.2 3.5 33 6-40 12-44 (79)
57 2vl6_A SSO MCM N-TER, minichro 88.2 0.4 1.4E-05 30.8 3.0 29 7-35 139-177 (268)
58 1a1h_A QGSR zinc finger peptid 88.1 0.5 1.7E-05 24.0 2.9 27 9-35 34-71 (90)
59 4a17_Y RPL37A, 60S ribosomal p 87.6 0.24 8.3E-06 29.3 1.6 30 7-36 34-64 (103)
60 1vzi_A Desulfoferrodoxin; ferr 87.4 0.56 1.9E-05 27.9 3.1 26 7-34 5-32 (126)
61 2ct1_A Transcriptional repress 87.3 0.5 1.7E-05 23.7 2.5 29 8-36 14-55 (77)
62 2lt7_A Transcriptional regulat 87.0 0.65 2.2E-05 26.7 3.2 29 7-35 20-59 (133)
63 2jz8_A Uncharacterized protein 87.0 0.33 1.1E-05 28.0 1.9 20 21-40 43-62 (87)
64 2csh_A Zinc finger protein 297 86.6 0.84 2.9E-05 24.2 3.3 11 10-20 38-48 (110)
65 2d9h_A Zinc finger protein 692 86.5 0.46 1.6E-05 23.9 2.1 30 7-36 5-48 (78)
66 3cc2_Z 50S ribosomal protein L 86.5 0.58 2E-05 28.2 2.8 31 6-36 57-88 (116)
67 2jrr_A Uncharacterized protein 86.4 0.38 1.3E-05 26.4 1.8 18 23-40 37-54 (67)
68 3j21_i 50S ribosomal protein L 86.3 0.21 7.2E-06 28.5 0.8 29 8-36 34-63 (83)
69 1yc5_A NAD-dependent deacetyla 85.9 0.71 2.4E-05 29.5 3.2 29 8-36 120-155 (246)
70 3j20_W 30S ribosomal protein S 85.6 1.7 5.9E-05 23.6 4.2 29 8-36 14-44 (63)
71 2dmd_A Zinc finger protein 64, 85.6 0.75 2.6E-05 23.6 2.7 11 10-20 37-47 (96)
72 1dl6_A Transcription factor II 85.5 0.49 1.7E-05 24.7 1.9 25 11-35 13-39 (58)
73 1y07_A Desulfoferrodoxin (RBO) 85.4 0.7 2.4E-05 27.5 2.8 27 6-34 4-33 (128)
74 2dlq_A GLI-kruppel family memb 85.2 0.74 2.5E-05 24.5 2.6 29 8-36 65-104 (124)
75 3iz5_m 60S ribosomal protein L 85.2 0.24 8.3E-06 28.7 0.7 30 7-36 34-64 (92)
76 1ffk_W Ribosomal protein L37AE 84.8 0.43 1.5E-05 26.5 1.6 32 5-36 23-55 (73)
77 1qxf_A GR2, 30S ribosomal prot 84.8 1.4 4.7E-05 24.2 3.6 29 8-36 6-36 (66)
78 1rfh_A RAS association (ralgds 84.8 0.95 3.3E-05 23.3 2.9 23 11-36 24-46 (59)
79 2eps_A POZ-, at HOOK-, and zin 84.7 0.67 2.3E-05 22.0 2.1 30 6-35 9-50 (54)
80 3irb_A Uncharacterized protein 84.7 0.7 2.4E-05 27.7 2.6 30 8-40 46-75 (145)
81 3lpe_B DNA-directed RNA polyme 84.6 0.47 1.6E-05 25.3 1.6 20 11-35 3-22 (59)
82 2ytg_A ZFP-95, zinc finger pro 84.6 0.72 2.5E-05 20.8 2.1 15 8-22 11-25 (46)
83 3izc_m 60S ribosomal protein R 84.5 0.25 8.6E-06 28.7 0.5 30 7-36 34-64 (92)
84 2cot_A Zinc finger protein 435 84.2 0.4 1.4E-05 24.1 1.2 31 6-36 15-56 (77)
85 3h0g_I DNA-directed RNA polyme 84.1 0.71 2.4E-05 26.7 2.4 24 12-35 7-35 (113)
86 2fnf_X Putative RAS effector N 84.1 0.79 2.7E-05 24.7 2.4 23 11-36 37-59 (72)
87 3p8b_A DNA-directed RNA polyme 83.8 0.45 1.5E-05 27.1 1.4 21 11-36 25-45 (81)
88 2epw_A Zinc finger protein 268 83.8 0.85 2.9E-05 20.5 2.2 15 8-22 11-25 (46)
89 2jr7_A DPH3 homolog; DESR1, CS 83.8 2.6 8.7E-05 24.1 4.6 34 3-37 17-56 (89)
90 2jne_A Hypothetical protein YF 83.8 0.87 3E-05 26.9 2.7 23 9-35 48-70 (101)
91 1q1a_A HST2 protein; ternary c 83.6 0.95 3.2E-05 29.6 3.1 29 8-36 135-173 (289)
92 2m0d_A Zinc finger and BTB dom 83.6 0.63 2.2E-05 18.5 1.5 13 9-21 3-15 (30)
93 2yu8_A Zinc finger protein 347 83.5 0.89 3E-05 20.5 2.2 15 8-22 11-25 (46)
94 2l6l_A DNAJ homolog subfamily 83.5 1.9 6.7E-05 25.4 4.2 31 6-37 109-144 (155)
95 2kvh_A Zinc finger and BTB dom 83.4 0.63 2.2E-05 18.5 1.5 13 9-21 3-15 (27)
96 1m2k_A Silent information regu 83.4 0.97 3.3E-05 28.9 3.0 29 8-36 120-152 (249)
97 2odx_A Cytochrome C oxidase po 83.4 0.88 3E-05 25.5 2.5 18 21-38 51-68 (80)
98 2eme_A Zinc finger protein 473 83.0 0.65 2.2E-05 20.9 1.6 14 8-21 11-24 (46)
99 1f2i_G Fusion of N-terminal 17 82.8 1.2 4.2E-05 21.8 2.7 29 8-36 18-59 (73)
100 2kvf_A Zinc finger and BTB dom 82.7 0.72 2.5E-05 18.4 1.5 12 10-21 4-15 (28)
101 3p2a_A Thioredoxin 2, putative 82.7 1.1 3.7E-05 25.0 2.7 31 6-36 2-35 (148)
102 2m0f_A Zinc finger and BTB dom 82.3 0.73 2.5E-05 18.2 1.5 11 10-20 3-13 (29)
103 2yso_A ZFP-95, zinc finger pro 82.2 0.77 2.6E-05 20.7 1.7 14 8-21 11-24 (46)
104 1x6h_A Transcriptional repress 82.0 1.6 5.6E-05 21.7 3.1 29 8-36 14-57 (86)
105 2gnr_A Conserved hypothetical 82.0 1 3.6E-05 27.1 2.6 28 7-37 45-72 (145)
106 2em5_A ZFP-95, zinc finger pro 81.9 0.7 2.4E-05 20.9 1.5 14 8-21 11-24 (46)
107 2ene_A Zinc finger protein 347 81.7 0.81 2.8E-05 20.6 1.6 14 8-21 11-24 (46)
108 1rik_A E6APC1 peptide; E6-bind 81.6 0.81 2.8E-05 18.2 1.5 13 10-22 3-15 (29)
109 1ptq_A Protein kinase C delta 81.5 1.5 5.1E-05 21.2 2.7 26 11-36 13-38 (50)
110 1qyp_A RNA polymerase II; tran 81.4 1.3 4.6E-05 22.5 2.6 11 8-18 42-52 (57)
111 2em8_A Zinc finger protein 224 81.3 1.1 3.6E-05 20.3 2.0 15 7-21 10-24 (46)
112 2ct7_A Ring finger protein 31; 81.2 2.2 7.7E-05 23.2 3.6 29 9-37 25-54 (86)
113 2eml_A Zinc finger protein 28 81.1 0.82 2.8E-05 20.6 1.5 14 8-21 11-24 (46)
114 2kvg_A Zinc finger and BTB dom 81.1 0.62 2.1E-05 18.8 1.0 12 10-21 4-15 (27)
115 2wbt_A B-129; zinc finger; 2.7 80.9 0.7 2.4E-05 25.2 1.5 29 8-36 73-110 (129)
116 2i13_A AART; DNA binding, zinc 80.8 1.4 4.8E-05 25.5 2.9 11 10-20 134-144 (190)
117 2eoo_A ZFP-95, zinc finger pro 80.8 0.8 2.7E-05 20.7 1.4 14 8-21 11-24 (46)
118 2emm_A ZFP-95, zinc finger pro 80.8 0.69 2.4E-05 20.8 1.2 14 8-21 11-24 (46)
119 2elm_A Zinc finger protein 406 80.7 1.8 6.1E-05 18.7 2.6 15 7-21 7-21 (37)
120 2em9_A Zinc finger protein 224 80.6 0.88 3E-05 20.4 1.6 14 8-21 11-24 (46)
121 2emp_A Zinc finger protein 347 80.6 0.9 3.1E-05 20.5 1.6 14 8-21 11-24 (46)
122 1ma3_A SIR2-AF2, transcription 80.6 1.5 5E-05 28.1 3.1 27 8-34 122-155 (253)
123 2em7_A Zinc finger protein 224 80.3 0.85 2.9E-05 20.5 1.5 14 8-21 11-24 (46)
124 1v54_F VI, cytochrome C oxidas 80.3 1.3 4.5E-05 25.6 2.5 17 21-37 74-90 (98)
125 2ysp_A Zinc finger protein 224 80.3 0.62 2.1E-05 21.1 1.0 14 8-21 11-24 (46)
126 1wge_A Hypothetical protein 26 80.2 3.9 0.00013 22.9 4.5 34 3-37 24-63 (83)
127 2emy_A Zinc finger protein 268 80.0 0.91 3.1E-05 20.4 1.5 14 8-21 11-24 (46)
128 2lvu_A Zinc finger and BTB dom 81.2 0.35 1.2E-05 19.2 0.0 14 9-22 2-15 (26)
129 2elx_A Zinc finger protein 406 79.8 1 3.5E-05 18.8 1.5 14 8-21 6-19 (35)
130 2xzm_6 RPS27E; ribosome, trans 79.7 3.7 0.00013 23.3 4.2 29 8-36 31-61 (81)
131 2en1_A Zinc finger protein 224 79.6 0.74 2.5E-05 20.8 1.1 14 8-21 11-24 (46)
132 2ytd_A Zinc finger protein 473 79.3 1 3.5E-05 20.3 1.5 14 8-21 11-24 (46)
133 2ee8_A Protein ODD-skipped-rel 79.2 0.69 2.4E-05 24.3 1.0 28 8-35 16-54 (106)
134 1znf_A 31ST zinc finger from X 79.2 0.49 1.7E-05 18.7 0.3 12 10-21 2-13 (27)
135 1wfh_A Zinc finger (AN1-like) 79.1 0.86 2.9E-05 24.8 1.4 28 4-35 10-37 (64)
136 2eq0_A Zinc finger protein 347 79.0 1.1 3.7E-05 20.2 1.6 15 7-21 10-24 (46)
137 1yop_A KTI11P; zinc finger, me 78.9 2.5 8.4E-05 23.8 3.3 34 3-37 17-56 (83)
138 2kwq_A Protein MCM10 homolog; 78.8 1.4 4.9E-05 25.3 2.3 26 9-35 48-74 (92)
139 2en8_A Zinc finger protein 224 78.7 1.1 3.6E-05 20.2 1.5 14 8-21 11-24 (46)
140 2el6_A Zinc finger protein 268 78.3 1.1 3.7E-05 20.2 1.5 14 8-21 11-24 (46)
141 1hxr_A Guanine nucleotide exch 78.3 0.99 3.4E-05 26.7 1.6 16 25-40 11-26 (115)
142 2y69_F Cytochrome C oxidase su 78.1 1.8 6.1E-05 26.3 2.8 18 21-38 105-122 (129)
143 1ryq_A DNA-directed RNA polyme 78.0 0.86 3E-05 25.1 1.2 23 8-35 10-32 (69)
144 1srk_A Zinc finger protein ZFP 77.9 1.3 4.3E-05 18.6 1.5 14 8-21 6-19 (35)
145 3glr_A NAD-dependent deacetyla 77.9 2.1 7.2E-05 28.4 3.3 28 8-35 138-172 (285)
146 2ctd_A Zinc finger protein 512 77.7 1.2 4.2E-05 24.0 1.8 28 9-36 34-72 (96)
147 1q14_A HST2 protein; histone d 77.6 2 6.9E-05 29.3 3.2 29 8-36 143-181 (361)
148 2ep2_A Zinc finger protein 484 77.5 1.3 4.6E-05 19.8 1.7 14 8-21 11-24 (46)
149 1vk6_A NADH pyrophosphatase; 1 77.4 1.6 5.5E-05 28.2 2.6 24 12-35 110-134 (269)
150 3u5c_b RP61, YS20, 40S ribosom 77.4 2.8 9.6E-05 23.8 3.3 29 8-36 33-63 (82)
151 2i5o_A DNA polymerase ETA; zin 77.4 1.6 5.4E-05 21.5 2.0 13 9-21 9-21 (39)
152 1twf_I B12.6, DNA-directed RNA 77.0 0.73 2.5E-05 27.0 0.8 25 12-36 7-36 (122)
153 2apo_B Ribosome biogenesis pro 76.7 1.2 4E-05 23.9 1.5 22 9-35 6-27 (60)
154 2elz_A Zinc finger protein 224 76.5 0.7 2.4E-05 20.9 0.5 14 8-21 11-24 (46)
155 1tfi_A Transcriptional elongat 76.5 2.4 8.1E-05 21.5 2.6 9 27-35 38-46 (50)
156 2en6_A Zinc finger protein 268 76.2 0.95 3.2E-05 20.4 0.9 15 7-21 10-24 (46)
157 2jp9_A Wilms tumor 1; DNA bind 76.1 2.6 9.1E-05 22.1 2.9 11 10-20 67-77 (119)
158 2dlk_A Novel protein; ZF-C2H2 75.8 1.5 5.2E-05 21.7 1.7 11 10-20 39-51 (79)
159 2eov_A Zinc finger protein 484 75.8 0.74 2.5E-05 20.7 0.5 14 8-21 11-24 (46)
160 2els_A Zinc finger protein 406 75.5 1.6 5.4E-05 18.5 1.5 14 8-21 8-21 (36)
161 2fiy_A Protein FDHE homolog; F 75.3 1.6 5.4E-05 29.4 2.2 25 8-35 207-231 (309)
162 2elt_A Zinc finger protein 406 75.1 1.6 5.4E-05 18.3 1.5 14 8-21 8-21 (36)
163 3u50_C Telomerase-associated p 75.1 2.9 0.0001 26.0 3.2 28 8-35 41-68 (172)
164 1faq_A RAF-1; transferase, ser 75.0 2.5 8.6E-05 20.6 2.4 23 10-36 15-37 (52)
165 2enz_A NPKC-theta, protein kin 74.8 2.6 8.7E-05 21.8 2.5 26 11-36 25-50 (65)
166 3qt1_I DNA-directed RNA polyme 74.7 1.5 5.1E-05 26.3 1.8 24 12-35 27-55 (133)
167 2elv_A Zinc finger protein 406 74.7 1.7 5.8E-05 18.3 1.5 14 8-21 8-21 (36)
168 2ely_A Zinc finger protein 224 74.6 1.1 3.9E-05 20.2 1.0 15 8-22 11-25 (46)
169 3axs_A Probable N(2),N(2)-dime 74.4 3 0.0001 28.5 3.4 31 7-37 242-274 (392)
170 1paa_A Yeast transcription fac 74.4 0.67 2.3E-05 18.6 0.1 12 10-21 3-14 (30)
171 2elp_A Zinc finger protein 406 74.3 1.7 5.9E-05 18.5 1.5 15 8-22 8-22 (37)
172 1ard_A Yeast transcription fac 73.9 0.83 2.8E-05 18.1 0.3 12 10-21 3-14 (29)
173 4bbr_M Transcription initiatio 73.8 1.3 4.5E-05 29.7 1.5 27 8-34 20-50 (345)
174 2elq_A Zinc finger protein 406 73.7 1.8 6.2E-05 18.3 1.5 14 8-21 8-21 (36)
175 1njq_A Superman protein; zinc- 73.5 1.8 6.3E-05 18.7 1.5 13 9-21 6-18 (39)
176 2m0e_A Zinc finger and BTB dom 73.5 0.76 2.6E-05 18.1 0.1 13 10-22 3-15 (29)
177 2epc_A Zinc finger protein 32; 73.4 1.9 6.4E-05 18.8 1.5 14 8-21 10-23 (42)
178 3uej_A NPKC-delta, protein kin 73.3 3.3 0.00011 21.3 2.7 26 11-36 22-47 (65)
179 1klr_A Zinc finger Y-chromosom 73.2 0.76 2.6E-05 18.2 0.1 12 10-21 3-14 (30)
180 3iz6_X 40S ribosomal protein S 73.2 2.9 9.8E-05 24.0 2.6 28 8-35 35-64 (86)
181 2eop_A Zinc finger protein 268 73.0 0.89 3E-05 20.4 0.3 14 8-21 11-24 (46)
182 3o9x_A Uncharacterized HTH-typ 72.8 2.2 7.5E-05 24.0 2.1 14 26-39 2-15 (133)
183 2ytr_A Zinc finger protein 347 72.8 0.68 2.3E-05 20.8 -0.1 14 8-21 11-24 (46)
184 2lvt_A Zinc finger and BTB dom 75.1 0.74 2.5E-05 18.5 0.0 14 9-22 2-15 (29)
185 2pk7_A Uncharacterized protein 72.6 2.8 9.6E-05 22.6 2.4 25 10-34 9-34 (69)
186 2eq4_A Zinc finger protein 224 72.6 0.81 2.8E-05 20.6 0.1 14 8-21 11-24 (46)
187 2js4_A UPF0434 protein BB2007; 72.4 2.8 9.5E-05 22.7 2.3 25 10-34 9-34 (70)
188 2lvr_A Zinc finger and BTB dom 74.7 0.77 2.6E-05 18.4 0.0 14 9-22 3-16 (30)
189 2j7j_A Transcription factor II 72.1 4 0.00014 20.0 2.8 11 10-20 2-14 (85)
190 2enn_A NPKC-theta, protein kin 71.9 4.3 0.00015 21.7 3.1 27 10-36 35-61 (77)
191 2ytn_A Zinc finger protein 347 71.6 1.1 3.6E-05 20.2 0.4 14 8-21 11-24 (46)
192 2ghf_A ZHX1, zinc fingers and 71.4 3.4 0.00012 23.0 2.6 29 8-36 17-60 (102)
193 1wg2_A Zinc finger (AN1-like) 71.4 1.5 5.2E-05 23.8 1.1 27 6-36 12-38 (64)
194 3u31_A SIR2A, transcriptional 71.3 2.7 9.2E-05 27.9 2.5 27 8-35 153-190 (290)
195 2epv_A Zinc finger protein 268 71.1 2.2 7.7E-05 19.0 1.5 14 8-21 11-24 (44)
196 3cng_A Nudix hydrolase; struct 71.1 6.9 0.00023 23.0 4.1 22 12-33 6-32 (189)
197 2en2_A B-cell lymphoma 6 prote 71.1 2.3 7.7E-05 18.6 1.5 14 8-21 10-23 (42)
198 2yuu_A NPKC-delta, protein kin 71.1 3.8 0.00013 22.1 2.7 25 11-35 30-54 (83)
199 2hf1_A Tetraacyldisaccharide-1 71.1 2.8 9.5E-05 22.6 2.1 25 10-34 9-34 (68)
200 2jr6_A UPF0434 protein NMA0874 71.0 2.8 9.7E-05 22.6 2.1 25 10-34 9-34 (68)
201 2emk_A Zinc finger protein 28 70.8 1 3.5E-05 20.4 0.3 14 8-21 11-24 (46)
202 2eoe_A Zinc finger protein 347 70.5 0.89 3.1E-05 20.4 0.0 14 8-21 11-24 (46)
203 1y8f_A UNC-13 homolog A, MUNC1 70.4 3.2 0.00011 21.5 2.2 26 11-36 26-51 (66)
204 1p7a_A BF3, BKLF, kruppel-like 70.3 1.1 3.9E-05 19.0 0.4 14 8-21 10-23 (37)
205 2eoq_A Zinc finger protein 224 70.2 0.96 3.3E-05 20.4 0.1 14 8-21 11-24 (46)
206 1ubd_C Protein (YY1 zinc finge 70.2 3.6 0.00012 21.9 2.5 11 10-20 35-45 (124)
207 2qkd_A Zinc finger protein ZPR 70.2 1.1 3.9E-05 31.4 0.5 29 8-36 219-259 (404)
208 2eli_A Protein kinase C alpha 69.9 4.1 0.00014 22.2 2.7 26 11-36 30-55 (85)
209 2epz_A Zinc finger protein 28 69.8 1.4 4.9E-05 19.7 0.7 14 8-21 11-24 (46)
210 2yu5_A Zinc finger protein 473 69.8 2.4 8.3E-05 18.7 1.5 15 8-22 11-25 (44)
211 1k81_A EIF-2-beta, probable tr 69.7 1.4 4.9E-05 21.0 0.7 27 11-37 2-32 (36)
212 2wbs_A Krueppel-like factor 4; 69.5 4.7 0.00016 20.1 2.7 27 9-35 35-74 (89)
213 3iuf_A Zinc finger protein UBI 69.5 2.5 8.5E-05 19.6 1.5 14 8-21 6-19 (48)
214 2ept_A Zinc finger protein 32; 69.4 2.6 8.9E-05 18.3 1.5 14 8-21 9-22 (41)
215 2el5_A Zinc finger protein 268 69.1 2.7 9.1E-05 18.3 1.5 14 8-21 9-22 (42)
216 2elr_A Zinc finger protein 406 69.1 1.2 4.2E-05 18.7 0.3 14 8-21 8-21 (36)
217 2aus_D NOP10, ribosome biogene 69.1 2.9 9.8E-05 22.4 1.9 22 10-36 6-27 (60)
218 2emb_A Zinc finger protein 473 69.0 2.6 9E-05 18.6 1.5 14 8-21 11-24 (44)
219 1weo_A Cellulose synthase, cat 68.8 2.1 7.2E-05 24.9 1.4 27 10-36 17-45 (93)
220 2ytp_A Zinc finger protein 484 68.5 2.7 9.4E-05 18.8 1.5 15 7-21 10-24 (46)
221 2emi_A Zinc finger protein 484 68.2 2.8 9.6E-05 18.7 1.5 15 7-21 10-24 (46)
222 2zjr_Z 50S ribosomal protein L 68.1 2.2 7.5E-05 22.6 1.3 25 6-34 27-51 (60)
223 2dkt_A Ring finger and CHY zin 68.1 3.7 0.00013 25.2 2.4 25 7-35 56-80 (143)
224 2ytm_A Zinc finger protein 28 68.0 0.98 3.3E-05 20.5 -0.1 14 8-21 11-24 (46)
225 1l1o_C Replication protein A 7 68.0 5.5 0.00019 24.3 3.3 28 7-34 41-70 (181)
226 2eof_A Zinc finger protein 268 67.7 2.9 0.0001 18.3 1.5 14 8-21 11-24 (44)
227 3k1f_M Transcription initiatio 67.6 2.7 9.2E-05 27.3 1.8 28 8-35 20-51 (197)
228 1s5p_A NAD-dependent deacetyla 67.6 3.8 0.00013 25.9 2.5 28 8-35 112-143 (235)
229 2vrw_B P95VAV, VAV1, proto-onc 67.5 4 0.00014 26.9 2.7 26 11-36 359-384 (406)
230 2em4_A Zinc finger protein 28 67.2 3 0.0001 18.6 1.5 14 8-21 11-24 (46)
231 2eow_A Zinc finger protein 347 67.2 3.1 0.0001 18.5 1.6 14 8-21 11-24 (46)
232 2en3_A ZFP-95, zinc finger pro 67.1 3.1 0.0001 18.5 1.5 15 8-22 11-25 (46)
233 3hcs_A TNF receptor-associated 66.8 6 0.00021 23.2 3.2 30 10-39 111-150 (170)
234 2yrj_A Zinc finger protein 473 66.7 3.1 0.00011 18.4 1.5 15 7-21 10-24 (46)
235 2ema_A Zinc finger protein 347 66.7 3.2 0.00011 18.5 1.5 15 7-21 10-24 (46)
236 2yts_A Zinc finger protein 484 66.7 3.2 0.00011 18.4 1.5 15 7-21 10-24 (46)
237 4b6d_A RAC GTPase-activating p 66.6 4.5 0.00015 21.1 2.3 24 11-35 21-44 (61)
238 2ep3_A Zinc finger protein 484 66.6 3.2 0.00011 18.5 1.5 14 8-21 11-24 (46)
239 1rim_A E6APC2 peptide; E6-bind 66.4 1.4 4.6E-05 18.7 0.2 12 10-21 3-14 (33)
240 2yto_A Zinc finger protein 484 66.3 3.2 0.00011 18.5 1.5 15 7-21 10-24 (46)
241 2eor_A Zinc finger protein 224 66.2 3.2 0.00011 18.4 1.5 14 8-21 11-24 (46)
242 2em3_A Zinc finger protein 28 65.8 3.4 0.00011 18.4 1.5 14 8-21 11-24 (46)
243 2emj_A Zinc finger protein 28 65.7 3.3 0.00011 18.5 1.5 14 8-21 11-24 (46)
244 2ct0_A Non-SMC element 1 homol 65.5 4.1 0.00014 22.0 2.1 22 11-36 17-38 (74)
245 3ga8_A HTH-type transcriptiona 65.5 4 0.00014 21.7 2.0 15 26-40 2-16 (78)
246 2emh_A Zinc finger protein 484 65.5 3.4 0.00012 18.4 1.5 14 8-21 11-24 (46)
247 1h7b_A Anaerobic ribonucleotid 65.3 1.5 5.1E-05 32.0 0.3 27 9-35 540-567 (605)
248 1wfp_A Zinc finger (AN1-like) 65.2 2.9 9.8E-05 23.3 1.4 26 6-35 22-47 (74)
249 2ytf_A Zinc finger protein 268 65.1 3.5 0.00012 18.2 1.5 14 8-21 11-24 (46)
250 2elo_A Zinc finger protein 406 65.1 2 6.9E-05 18.1 0.6 13 8-20 8-20 (37)
251 2eoy_A Zinc finger protein 473 65.1 3.5 0.00012 18.4 1.5 15 8-22 11-25 (46)
252 2ytj_A Zinc finger protein 484 65.0 3.6 0.00012 18.3 1.5 14 8-21 11-24 (46)
253 1fv5_A First zinc finger of U- 64.9 1.4 4.9E-05 20.5 0.1 17 6-22 5-21 (36)
254 1yui_A GAGA-factor; complex (D 64.9 3.4 0.00012 19.3 1.5 14 8-21 23-36 (54)
255 2ab3_A ZNF29; zinc finger prot 64.8 2.8 9.6E-05 16.3 1.0 12 10-21 3-16 (29)
256 2kfq_A FP1; protein, de novo p 64.6 0.86 2.9E-05 19.2 -0.7 12 10-21 3-14 (32)
257 2el4_A Zinc finger protein 268 64.6 3.5 0.00012 18.2 1.5 14 8-21 11-24 (46)
258 3ir9_A Peptide chain release f 64.4 11 0.00038 22.9 4.1 35 7-41 76-118 (166)
259 2emf_A Zinc finger protein 484 64.3 3.7 0.00013 18.3 1.5 15 7-21 10-24 (46)
260 2kpi_A Uncharacterized protein 64.2 1.4 4.9E-05 22.9 0.1 25 10-35 11-37 (56)
261 2ytk_A Zinc finger protein 347 64.2 3.7 0.00013 18.2 1.5 15 7-21 10-24 (46)
262 1vfy_A Phosphatidylinositol-3- 63.9 5.1 0.00017 21.2 2.2 23 11-34 13-35 (73)
263 2eox_A Zinc finger protein 473 63.4 2.8 9.6E-05 18.5 1.0 15 8-22 11-25 (44)
264 2enc_A Zinc finger protein 224 63.1 4 0.00014 18.1 1.5 14 8-21 11-24 (46)
265 2gai_A DNA topoisomerase I; zi 62.9 1.9 6.6E-05 31.3 0.5 31 8-39 555-586 (633)
266 3nw0_A Non-structural maintena 62.7 4.4 0.00015 26.0 2.1 9 26-34 217-225 (238)
267 2em2_A Zinc finger protein 28 62.3 4.3 0.00015 18.1 1.5 15 7-21 10-24 (46)
268 2eoz_A Zinc finger protein 473 62.0 3.1 0.00011 18.6 1.0 14 8-21 11-24 (46)
269 3q87_A Putative uncharacterize 61.7 2 7E-05 25.8 0.4 21 25-45 98-118 (125)
270 2epu_A Zinc finger protein 32; 61.3 3.2 0.00011 18.4 1.0 14 8-21 11-24 (45)
271 2jny_A Uncharacterized BCR; st 60.9 5.8 0.0002 21.3 2.1 31 10-42 11-42 (67)
272 2emx_A Zinc finger protein 268 60.8 5.9 0.0002 17.3 1.9 14 8-21 9-22 (44)
273 1wjp_A Zinc finger protein 295 60.6 1.1 3.7E-05 23.7 -0.9 29 8-36 15-52 (107)
274 2ep0_A Zinc finger protein 28 60.3 4.9 0.00017 17.8 1.5 14 8-21 11-24 (46)
275 2eos_A B-cell lymphoma 6 prote 60.1 2.4 8.1E-05 18.6 0.4 15 7-21 9-23 (42)
276 3k7a_M Transcription initiatio 60.1 3.3 0.00011 27.5 1.2 26 9-34 21-50 (345)
277 1kbe_A Kinase suppressor of RA 60.0 4.3 0.00015 20.5 1.4 22 11-36 16-37 (49)
278 2ytb_A Zinc finger protein 32; 59.7 2.4 8.1E-05 18.4 0.3 14 8-21 10-23 (42)
279 2yw8_A RUN and FYVE domain-con 59.4 6.7 0.00023 21.1 2.2 23 11-34 21-43 (82)
280 3f9v_A Minichromosome maintena 59.3 3 0.0001 29.6 1.0 28 8-35 134-171 (595)
281 4gop_C Putative uncharacterize 59.0 10 0.00035 25.7 3.5 29 7-35 306-336 (444)
282 2emg_A Zinc finger protein 484 58.9 2.4 8.4E-05 18.9 0.3 14 8-21 11-24 (46)
283 2yte_A Zinc finger protein 473 58.4 2.5 8.7E-05 18.3 0.3 14 8-21 9-22 (42)
284 2nn6_I 3'-5' exoribonuclease C 58.4 4.5 0.00015 25.5 1.6 25 11-36 171-195 (209)
285 1wfl_A Zinc finger protein 216 57.8 5.9 0.0002 22.0 1.8 30 8-41 24-53 (74)
286 1j8f_A SIRT2, sirtuin 2, isofo 57.0 7.1 0.00024 26.1 2.4 28 8-35 158-194 (323)
287 2enf_A Zinc finger protein 347 56.5 2.9 9.8E-05 18.6 0.3 14 8-21 11-24 (46)
288 1joc_A EEA1, early endosomal a 56.3 7.9 0.00027 22.6 2.3 24 10-34 70-93 (125)
289 1wff_A Riken cDNA 2810002D23 p 56.0 6.6 0.00023 22.3 1.9 25 8-35 24-48 (85)
290 1z2q_A LM5-1; membrane protein 55.6 8.9 0.0003 20.7 2.3 24 10-34 22-45 (84)
291 2lo3_A SAGA-associated factor 55.4 7.1 0.00024 19.8 1.8 19 5-23 12-31 (44)
292 2eoj_A Zinc finger protein 268 55.4 2.8 9.7E-05 18.4 0.2 14 8-21 11-24 (44)
293 2db6_A SH3 and cysteine rich d 55.3 3.1 0.00011 22.1 0.4 25 11-35 30-54 (74)
294 2ebt_A Krueppel-like factor 5; 54.6 8.4 0.00029 19.5 2.1 13 8-20 14-28 (100)
295 2enh_A Zinc finger protein 28 54.6 3.2 0.00011 18.5 0.3 15 8-22 11-25 (46)
296 2em6_A Zinc finger protein 224 54.4 3.2 0.00011 18.5 0.3 14 8-21 11-24 (46)
297 2yth_A Zinc finger protein 224 54.3 3.4 0.00012 18.5 0.4 14 8-21 11-24 (46)
298 2en9_A Zinc finger protein 28 54.2 3.2 0.00011 18.5 0.3 15 7-21 10-24 (46)
299 1wd2_A Ariadne-1 protein homol 54.2 3.9 0.00013 21.3 0.7 26 11-36 8-36 (60)
300 2yrm_A B-cell lymphoma 6 prote 54.1 3.4 0.00012 18.3 0.4 14 8-21 9-22 (43)
301 2eon_A ZFP-95, zinc finger pro 54.0 3.3 0.00011 18.5 0.3 14 8-21 11-24 (46)
302 3ky9_A Proto-oncogene VAV; cal 53.8 9.6 0.00033 26.6 2.8 26 11-36 531-556 (587)
303 2eq1_A Zinc finger protein 347 53.1 3.1 0.00011 18.5 0.1 15 7-21 10-24 (46)
304 2en7_A Zinc finger protein 268 53.1 2.7 9.2E-05 18.4 -0.1 14 8-21 11-24 (44)
305 2eom_A ZFP-95, zinc finger pro 53.0 3.2 0.00011 18.6 0.2 14 8-21 11-24 (46)
306 2eou_A Zinc finger protein 473 52.5 3.2 0.00011 18.3 0.2 14 8-21 11-24 (44)
307 2eoh_A Zinc finger protein 28 52.4 3.3 0.00011 18.5 0.2 14 8-21 11-24 (46)
308 2epx_A Zinc finger protein 28 52.4 3.8 0.00013 18.2 0.4 14 8-21 11-24 (47)
309 1dvp_A HRS, hepatocyte growth 52.2 9.4 0.00032 23.7 2.3 24 10-34 162-185 (220)
310 3t7l_A Zinc finger FYVE domain 52.1 11 0.00036 20.7 2.3 24 10-34 21-44 (90)
311 3f2b_A DNA-directed DNA polyme 52.1 11 0.00038 29.3 3.1 27 9-35 502-536 (1041)
312 2e2z_A TIM15; protein import, 51.9 8.3 0.00028 22.5 1.9 31 8-38 12-50 (100)
313 2emz_A ZFP-95, zinc finger pro 51.5 3.5 0.00012 18.4 0.2 14 8-21 11-24 (46)
314 2ep1_A Zinc finger protein 484 50.9 3.1 0.00011 18.5 -0.1 14 8-21 11-24 (46)
315 2eq2_A Zinc finger protein 347 50.9 2.9 0.0001 18.6 -0.2 14 8-21 11-24 (46)
316 1y02_A CARP2, FYVE-ring finger 50.8 6.1 0.00021 23.3 1.2 26 8-34 18-43 (120)
317 3u5e_m 60S ribosomal protein L 50.6 7.7 0.00026 22.1 1.6 25 9-36 93-119 (128)
318 2ytq_A Zinc finger protein 268 50.5 4.1 0.00014 18.1 0.3 14 8-21 11-24 (46)
319 2eq3_A Zinc finger protein 347 50.4 3.3 0.00011 18.4 -0.0 14 8-21 11-24 (46)
320 3bvo_A CO-chaperone protein HS 49.9 9 0.00031 24.1 2.0 26 9-34 10-35 (207)
321 2yti_A Zinc finger protein 347 49.8 3 0.0001 18.6 -0.2 14 8-21 11-24 (46)
322 1x4u_A Zinc finger, FYVE domai 49.4 12 0.0004 20.1 2.2 12 11-22 16-27 (84)
323 2gag_D Heterotetrameric sarcos 49.3 3.7 0.00013 23.9 0.1 10 26-35 3-12 (99)
324 2em0_A Zinc finger protein 224 49.0 4 0.00014 18.1 0.2 14 8-21 11-24 (46)
325 2row_A RHO-associated protein 48.9 18 0.00061 20.1 2.9 25 12-36 38-64 (84)
326 2l7x_A Envelope glycoprotein; 48.6 5.3 0.00018 22.4 0.6 10 27-36 31-40 (77)
327 1sp2_A SP1F2; zinc finger, tra 48.2 4.7 0.00016 16.2 0.3 12 10-21 3-16 (31)
328 2ctu_A Zinc finger protein 483 48.0 22 0.00074 16.7 3.1 29 7-35 16-48 (73)
329 1wfk_A Zinc finger, FYVE domai 47.9 14 0.00047 20.3 2.3 23 10-33 10-32 (88)
330 3h99_A Methionyl-tRNA syntheta 47.9 12 0.0004 26.1 2.5 29 12-40 171-199 (560)
331 1tf6_A Protein (transcription 47.8 4.4 0.00015 23.3 0.2 28 8-35 11-53 (190)
332 3fac_A Putative uncharacterize 47.1 20 0.00069 19.9 3.0 23 27-49 68-91 (118)
333 3cxl_A N-chimerin; SH2, RHO-GA 46.9 14 0.00049 25.2 2.8 26 11-36 222-247 (463)
334 2lk0_A RNA-binding protein 5; 45.9 22 0.00075 16.2 2.7 25 7-34 3-27 (32)
335 3zyq_A Hepatocyte growth facto 45.8 13 0.00044 23.3 2.2 22 11-33 166-187 (226)
336 1bhi_A CRE-BP1, ATF-2; CRE bin 45.7 12 0.00041 15.6 1.6 14 8-21 5-20 (38)
337 3riy_A NAD-dependent deacetyla 45.5 10 0.00035 24.5 1.8 13 8-20 133-145 (273)
338 2epa_A Krueppel-like factor 10 45.4 25 0.00086 16.7 2.9 30 7-36 15-59 (72)
339 1zfd_A SWI5; DNA binding motif 45.2 5.8 0.0002 15.9 0.4 12 10-21 4-17 (32)
340 1va1_A Transcription factor SP 44.7 13 0.00046 15.6 1.6 14 8-21 7-22 (37)
341 1mzb_A Ferric uptake regulatio 44.7 11 0.00039 21.4 1.7 15 8-22 90-104 (136)
342 3r8s_0 50S ribosomal protein L 44.5 18 0.00062 18.6 2.3 12 25-36 26-37 (56)
343 2f9y_B Acetyl-coenzyme A carbo 44.0 7 0.00024 25.9 0.8 31 6-36 21-53 (304)
344 1kaf_A Transcription regulator 44.0 19 0.00065 21.3 2.6 18 34-51 35-52 (108)
345 1wii_A Hypothetical UPF0222 pr 43.8 5 0.00017 22.6 0.1 33 7-39 21-60 (85)
346 2d74_B Translation initiation 43.7 6.9 0.00023 24.0 0.7 27 11-37 106-136 (148)
347 1nee_A EIF-2-beta, probable tr 43.5 13 0.00046 22.4 1.9 25 11-35 104-132 (138)
348 2cor_A Pinch protein; LIM doma 43.4 14 0.00049 19.1 1.9 29 8-36 14-51 (79)
349 3mwm_A ZUR, putative metal upt 42.8 13 0.00043 21.5 1.7 15 8-22 86-100 (139)
350 1l8d_A DNA double-strand break 42.7 8.7 0.0003 21.3 1.0 11 26-36 47-57 (112)
351 1lv3_A Hypothetical protein YA 42.6 19 0.00064 19.6 2.3 11 10-20 10-20 (68)
352 3eyy_A Putative iron uptake re 42.5 12 0.00042 21.6 1.7 15 8-22 89-103 (145)
353 2yt5_A Metal-response element- 42.5 16 0.00055 18.4 1.9 25 10-34 7-31 (66)
354 3cw2_K Translation initiation 42.1 7.3 0.00025 23.6 0.6 25 11-35 105-133 (139)
355 2fe3_A Peroxide operon regulat 41.9 13 0.00045 21.4 1.7 16 8-23 92-107 (145)
356 2ytt_A Zinc finger protein 473 41.7 4.7 0.00016 17.9 -0.2 14 8-21 11-24 (46)
357 2epp_A POZ-, at HOOK-, and zin 41.6 6 0.00021 20.5 0.2 16 6-21 10-25 (66)
358 2yuc_A TNF receptor-associated 41.1 14 0.00047 18.8 1.6 28 11-38 18-56 (76)
359 2xig_A Ferric uptake regulatio 40.5 14 0.00048 21.5 1.7 15 8-22 98-112 (150)
360 2k5c_A Uncharacterized protein 40.0 11 0.00037 21.8 1.1 17 6-22 48-64 (95)
361 2w57_A Ferric uptake regulatio 39.8 15 0.0005 21.4 1.7 15 8-22 89-103 (150)
362 1x0t_A Ribonuclease P protein 39.1 18 0.00063 20.9 2.0 15 8-22 93-107 (120)
363 1v5n_A PDI-like hypothetical p 39.1 17 0.00059 19.9 1.8 23 10-35 48-70 (89)
364 3mhs_C SAGA-associated factor 38.9 21 0.0007 20.8 2.2 13 8-20 69-81 (99)
365 4ets_A Ferric uptake regulatio 38.9 15 0.00052 21.8 1.7 15 8-22 106-120 (162)
366 2a20_A Regulating synaptic mem 38.5 15 0.00053 19.8 1.5 14 11-24 35-48 (62)
367 1pqv_S STP-alpha, transcriptio 38.4 18 0.00062 23.9 2.1 28 8-35 267-305 (309)
368 1wjv_A Cell growth regulating 38.1 43 0.0015 18.6 3.4 27 8-34 9-45 (79)
369 2poi_A Baculoviral IAP repeat- 37.8 16 0.00056 20.4 1.6 13 24-36 53-65 (94)
370 1nui_A DNA primase/helicase; z 37.6 22 0.00074 22.1 2.3 28 8-35 13-42 (255)
371 3po3_S Transcription elongatio 37.5 15 0.00051 22.7 1.5 28 8-35 136-174 (178)
372 4iao_A NAD-dependent histone d 37.3 18 0.00061 26.1 2.1 26 8-33 298-330 (492)
373 1ee8_A MUTM (FPG) protein; bet 37.1 15 0.00052 23.8 1.6 21 12-32 238-261 (266)
374 3lcz_A YCZA, inhibitor of trap 36.9 24 0.00083 17.8 2.1 35 3-40 3-37 (53)
375 2riq_A Poly [ADP-ribose] polym 36.8 15 0.0005 22.8 1.4 17 24-40 76-92 (160)
376 1x68_A FHL5 protein; four-and- 36.3 14 0.00046 18.8 1.0 25 10-34 36-64 (76)
377 1t1h_A Gspef-atpub14, armadill 36.0 33 0.0011 17.2 2.5 23 14-36 25-53 (78)
378 1k3x_A Endonuclease VIII; hydr 35.7 13 0.00044 24.0 1.1 10 28-37 236-245 (262)
379 2ppt_A Thioredoxin-2; thiredox 35.7 32 0.0011 19.4 2.7 30 8-37 13-45 (155)
380 2dmi_A Teashirt homolog 3; zin 35.4 18 0.00063 18.8 1.5 29 8-36 18-60 (115)
381 3v2d_5 50S ribosomal protein L 35.2 21 0.00071 18.7 1.7 28 7-41 28-55 (60)
382 2hjh_A NAD-dependent histone d 35.0 18 0.0006 24.3 1.7 26 8-33 160-192 (354)
383 1ncs_A Peptide M30F, transcrip 34.9 26 0.00089 15.6 1.9 15 8-22 17-33 (47)
384 3d9t_A Baculoviral IAP repeat- 34.8 20 0.00067 20.0 1.6 13 24-36 46-58 (97)
385 1zfo_A LAsp-1; LIM domain, zin 34.6 13 0.00044 16.6 0.7 10 11-20 5-14 (31)
386 2xzf_A Formamidopyrimidine-DNA 34.6 14 0.00047 23.9 1.1 9 29-37 245-253 (271)
387 3pfq_A PKC-B, PKC-beta, protei 34.5 23 0.0008 25.0 2.3 25 11-35 115-139 (674)
388 1k82_A Formamidopyrimidine-DNA 34.4 14 0.00048 23.9 1.1 11 28-38 242-252 (268)
389 3u6p_A Formamidopyrimidine-DNA 34.0 14 0.00049 24.0 1.1 14 27-40 246-259 (273)
390 1tot_A CREB-binding protein; z 33.2 20 0.00069 18.0 1.4 22 8-33 5-26 (52)
391 3mhs_E SAGA-associated factor 33.0 16 0.00053 21.3 1.0 16 8-23 73-89 (96)
392 1x6f_A Zinc finger protein 462 32.9 22 0.00074 18.8 1.5 14 8-21 24-37 (88)
393 3mao_A Methionine-R-sulfoxide 32.7 36 0.0012 19.8 2.5 18 3-20 7-24 (105)
394 2qra_D XIAP, baculoviral IAP r 32.6 22 0.00074 20.7 1.6 13 24-36 70-82 (111)
395 2o03_A Probable zinc uptake re 32.3 23 0.0008 19.9 1.7 15 8-22 82-96 (131)
396 3mv2_A Coatomer subunit alpha; 32.2 29 0.00099 23.7 2.4 14 24-37 285-298 (325)
397 2yqq_A Zinc finger HIT domain- 32.0 32 0.0011 17.8 2.1 19 11-35 14-32 (56)
398 3qqc_A DNA-directed RNA polyme 32.0 41 0.0014 23.5 3.2 27 8-34 4-31 (436)
399 1wig_A KIAA1808 protein; LIM d 32.0 11 0.00038 19.2 0.2 24 10-33 32-60 (73)
400 3m1d_A Baculoviral IAP repeat- 31.8 24 0.00082 19.3 1.6 13 24-36 44-56 (85)
401 1g47_A Pinch protein; LIM doma 31.6 27 0.00093 17.4 1.7 13 8-20 10-22 (77)
402 1ef4_A Subunit N, DNA-directed 31.5 11 0.00036 19.9 0.1 11 26-36 3-13 (55)
403 2ftc_P Mitochondrial ribosomal 31.4 25 0.00087 17.8 1.6 34 7-40 9-50 (52)
404 1g25_A CDK-activating kinase a 31.3 12 0.00042 18.3 0.3 24 13-36 24-53 (65)
405 2lq6_A Bromodomain-containing 31.3 42 0.0014 18.3 2.6 35 1-38 9-43 (87)
406 2zjr_1 50S ribosomal protein L 31.2 27 0.00091 18.0 1.7 35 7-41 9-53 (55)
407 2eln_A Zinc finger protein 406 31.2 26 0.0009 15.8 1.5 14 8-21 8-23 (38)
408 2k3r_A Ribonuclease P protein 31.2 24 0.00081 20.6 1.6 15 8-22 88-102 (123)
409 2ent_A Krueppel-like factor 15 31.1 28 0.00094 15.1 1.6 14 8-21 11-26 (48)
410 2gli_A Protein (five-finger GL 30.9 65 0.0022 17.3 3.4 13 9-21 97-111 (155)
411 2f2e_A PA1607; transcription f 30.9 40 0.0014 19.3 2.6 27 6-36 110-136 (146)
412 2zkr_2 60S ribosomal protein L 30.7 19 0.00065 20.9 1.1 26 8-35 15-40 (97)
413 3mkr_B Coatomer subunit alpha; 30.5 24 0.00082 24.0 1.7 14 24-37 276-289 (320)
414 2jsp_A Transcriptional regulat 30.2 21 0.00071 20.2 1.2 14 8-21 20-33 (87)
415 2k1p_A Zinc finger RAN-binding 30.1 24 0.00082 16.1 1.2 22 10-34 7-28 (33)
416 1x4w_A Hypothetical protein FL 30.0 2.3 7.9E-05 23.3 -2.8 26 8-34 14-39 (67)
417 4gat_A Nitrogen regulatory pro 29.7 6.3 0.00022 21.2 -1.0 27 8-34 8-38 (66)
418 2od1_A Protein CBFA2T1; zinc f 29.4 18 0.0006 18.2 0.8 24 5-34 9-32 (60)
419 1gnf_A Transcription factor GA 29.1 9 0.00031 19.2 -0.4 24 11-34 6-33 (46)
420 3hl5_A Baculoviral IAP repeat- 29.1 28 0.00095 19.4 1.6 14 23-36 43-56 (95)
421 1twf_J DNA-directed RNA polyme 28.9 16 0.00054 20.0 0.5 12 25-36 3-14 (70)
422 1g73_C Inhibitors of apoptosis 28.9 27 0.00094 20.4 1.6 14 23-36 57-70 (121)
423 2vm5_A Baculoviral IAP repeat- 28.9 28 0.00095 19.8 1.6 13 24-36 54-66 (106)
424 2ysl_A Tripartite motif-contai 28.3 41 0.0014 16.4 2.1 12 25-36 56-67 (73)
425 1wim_A KIAA0161 protein; ring 28.2 61 0.0021 16.9 2.9 33 3-35 14-61 (94)
426 2l8e_A Polyhomeotic-like prote 28.2 40 0.0014 16.9 2.0 13 26-38 18-30 (49)
427 1jd5_A DIAP1, apoptosis 1 inhi 28.1 29 0.00098 20.5 1.6 13 24-36 58-70 (124)
428 3v2d_6 50S ribosomal protein L 27.9 27 0.00091 18.0 1.3 35 7-41 8-52 (54)
429 1vq8_1 50S ribosomal protein L 27.8 45 0.0015 17.6 2.2 25 8-34 16-40 (57)
430 2vut_I AREA, nitrogen regulato 27.6 8.7 0.0003 19.0 -0.6 25 11-35 3-31 (43)
431 1a7i_A QCRP2 (LIM1); LIM domai 27.5 24 0.00082 18.0 1.1 11 10-20 8-18 (81)
432 1x4s_A Protein FON, zinc finge 27.4 31 0.0011 18.2 1.5 21 11-35 13-35 (59)
433 2kao_A Methionine-R-sulfoxide 27.3 35 0.0012 20.5 1.9 17 4-20 15-31 (124)
434 2vpb_A Hpygo1, pygopus homolog 27.1 36 0.0012 17.6 1.8 28 6-34 5-33 (65)
435 1se0_A Apoptosis 1 inhibitor; 27.1 31 0.0011 20.0 1.6 14 23-36 45-58 (116)
436 2yrt_A Chord containing protei 27.0 32 0.0011 18.9 1.6 25 6-30 6-32 (75)
437 2co8_A NEDD9 interacting prote 26.9 27 0.00093 18.1 1.3 11 10-20 16-26 (82)
438 2jw6_A Deformed epidermal auto 26.9 37 0.0013 16.2 1.7 22 7-34 7-28 (52)
439 2f9i_B Acetyl-coenzyme A carbo 26.7 21 0.00071 23.5 0.9 30 6-35 27-58 (285)
440 2e72_A POGO transposable eleme 26.7 16 0.00053 18.9 0.2 15 8-22 11-25 (49)
441 2dj8_A Protein CBFA2T1; zinc f 26.5 35 0.0012 17.0 1.6 23 6-34 12-34 (60)
442 2bx9_A Anti-trap, AT, tryptoph 26.5 42 0.0014 16.9 1.9 28 5-35 5-32 (53)
443 2l1u_A MSRB2, methionine-R-sul 26.2 51 0.0018 20.1 2.6 17 4-20 32-48 (143)
444 1p91_A Ribosomal RNA large sub 26.1 29 0.00098 20.8 1.4 24 9-33 2-25 (269)
445 2ehe_A Four and A half LIM dom 26.1 27 0.00094 17.7 1.2 10 11-20 17-26 (82)
446 2czr_A TBP-interacting protein 25.9 38 0.0013 22.2 2.0 15 8-22 153-167 (226)
447 1x6m_A GFA, glutathione-depend 25.9 36 0.0012 20.8 1.9 16 27-42 99-114 (196)
448 2ctt_A DNAJ homolog subfamily 25.8 49 0.0017 18.0 2.3 25 11-35 30-54 (104)
449 2qfa_A Baculoviral IAP repeat- 25.7 33 0.0011 20.3 1.6 13 24-36 52-64 (142)
450 3h7h_A Transcription elongatio 25.6 4.8 0.00016 24.1 -2.2 28 7-34 14-41 (120)
451 2gqj_A Zinc finger protein KIA 25.4 16 0.00055 19.0 0.2 29 8-36 23-64 (98)
452 3e0o_A Peptide methionine sulf 25.2 56 0.0019 20.0 2.6 18 4-21 37-54 (144)
453 3cxk_A Methionine-R-sulfoxide 25.2 54 0.0018 20.5 2.5 18 4-21 68-85 (164)
454 2yre_A F-box only protein 30; 25.1 66 0.0023 18.5 2.8 23 14-36 24-48 (100)
455 3r8s_1 50S ribosomal protein L 25.0 27 0.00091 17.7 0.9 35 6-40 4-48 (50)
456 3mup_A Baculoviral IAP repeat- 24.7 36 0.0012 19.9 1.6 13 24-36 52-64 (122)
457 1wfe_A Riken cDNA 2310008M20 p 24.2 92 0.0032 17.1 3.2 29 7-39 23-53 (86)
458 3siq_A Apoptosis 1 inhibitor; 24.1 37 0.0013 20.5 1.6 15 23-37 67-81 (136)
459 2i3h_A Baculoviral IAP repeat- 24.1 37 0.0013 20.3 1.6 13 24-36 80-92 (133)
460 3mpx_A FYVE, rhogef and PH dom 24.1 16 0.00056 24.0 0.0 24 9-33 375-398 (434)
461 2ecy_A TNF receptor-associated 23.7 21 0.0007 17.5 0.4 11 9-19 15-25 (66)
462 2g2k_A EIF-5, eukaryotic trans 23.7 20 0.00069 22.4 0.4 29 11-39 98-132 (170)
463 1x4l_A Skeletal muscle LIM-pro 23.5 4.6 0.00016 20.4 -2.2 10 11-20 7-16 (72)
464 3hcg_A Peptide methionine sulf 23.5 51 0.0017 20.2 2.2 18 4-21 38-55 (146)
465 3hcj_A MSRB, peptide methionin 23.4 61 0.0021 20.0 2.5 17 4-20 45-61 (154)
466 1dgs_A DNA ligase; AMP complex 23.1 33 0.0011 25.4 1.5 20 11-31 405-424 (667)
467 3j21_j 50S ribosomal protein L 23.0 24 0.00081 20.2 0.6 14 26-39 68-81 (94)
468 2yur_A Retinoblastoma-binding 22.9 50 0.0017 16.5 1.8 11 26-36 52-62 (74)
469 2kv1_A Methionine-R-sulfoxide 22.8 46 0.0016 19.9 1.8 16 5-20 16-31 (124)
470 2h7z_B Irditoxin subunit B; th 22.7 91 0.0031 16.4 2.9 31 11-42 9-39 (77)
471 2qgp_A HNH endonuclease; Q39X4 22.7 26 0.00089 19.7 0.7 12 25-36 34-45 (112)
472 2j9u_B VPS36, vacuolar protein 22.7 1.1E+02 0.0036 17.0 3.2 33 3-35 11-49 (76)
473 1v6g_A Actin binding LIM prote 22.6 4.3 0.00015 21.0 -2.5 10 11-20 17-26 (81)
474 1i4o_C X-linked IAP, baculovir 22.5 38 0.0013 20.4 1.5 13 24-36 76-88 (141)
475 1kl7_A Threonine synthase; thr 22.2 10 0.00035 26.8 -1.3 33 5-37 3-37 (514)
476 3j21_e 50S ribosomal protein L 21.8 47 0.0016 17.8 1.6 23 10-34 18-40 (62)
477 1r79_A Diacylglycerol kinase, 21.7 74 0.0025 17.4 2.5 27 10-36 39-66 (84)
478 4a18_A RPL37, ribosomal protei 21.5 78 0.0027 18.2 2.6 26 8-35 15-40 (94)
479 2cu8_A Cysteine-rich protein 2 21.5 28 0.00096 17.5 0.6 10 11-20 11-20 (76)
480 4a18_C 60S ribosomal protein L 21.2 46 0.0016 19.5 1.6 14 26-39 69-82 (109)
481 3oei_C RELK (toxin RV3358); to 20.9 97 0.0033 17.1 2.9 19 33-51 75-93 (96)
482 1z60_A TFIIH basal transcripti 20.7 51 0.0017 17.1 1.6 13 9-21 30-42 (59)
483 3u5c_a 40S ribosomal protein S 20.7 50 0.0017 19.7 1.7 12 25-36 19-30 (119)
484 1nkw_1 50S ribosomal protein L 20.6 50 0.0017 18.5 1.6 35 7-41 36-80 (82)
485 2kae_A GATA-type transcription 20.5 9.7 0.00033 20.7 -1.4 29 6-34 5-38 (71)
486 3dfx_A Trans-acting T-cell-spe 20.5 10 0.00034 20.2 -1.3 24 10-33 8-35 (63)
487 1z6u_A NP95-like ring finger p 20.1 62 0.0021 18.8 2.0 25 13-37 94-124 (150)
No 1
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.3e-27 Score=133.61 Aligned_cols=49 Identities=55% Similarity=1.209 Sum_probs=44.3
Q ss_pred CCCCceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEEecCceEEEEcC
Q 035461 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R~~~~~~~~Ar 51 (51)
+++++|.|+|++||.+++++.+++||||+||||||||+|+++++||+||
T Consensus 15 ~~~~~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~Rt~r~~~~~Ar 63 (63)
T 3h0g_L 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63 (63)
T ss_dssp ----CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCCCCCCCEEECCC
T ss_pred CCCCCeEEECCCCCCeeecCCCCceECCCCCcEEEEEecCCceEEEECC
Confidence 4556799999999999999999999999999999999999999999998
No 2
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=99.90 E-value=6e-25 Score=124.34 Aligned_cols=47 Identities=45% Similarity=0.977 Sum_probs=44.7
Q ss_pred CCceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEEecCceEEEEcC
Q 035461 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R~~~~~~~~Ar 51 (51)
+.++.|+|++||.+|++...++|+||+||+|||||+|+++++||+||
T Consensus 24 ~~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~R~~r~v~~~ar 70 (70)
T 1twf_L 24 TATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70 (70)
T ss_dssp -CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCCCCSSCEEECCC
T ss_pred CceEEEECCCCCCcceeCCCCCccCCCCCceEeEecCCCccEEEecC
Confidence 36799999999999999999999999999999999999999999998
No 3
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=99.69 E-value=9.1e-18 Score=89.60 Aligned_cols=42 Identities=31% Similarity=0.571 Sum_probs=37.1
Q ss_pred EEEcCCCCCeeecC---CCCeeEcCCCCCcEEEEEecCceEEEEc
Q 035461 9 SYICGDCGMENTLK---PGDVIQCRECGYRILYKKRTRRIVQYEA 50 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~---~~~~irC~~CG~RIlyK~R~~~~~~~~A 50 (51)
.|+|++||++|+.+ ..++||||+||+||+||.|++.++.++|
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p~vK~vkA 47 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKA 47 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCCSCEEEEC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEecCCcceeeec
Confidence 69999999999875 3588999999999999999999999988
No 4
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=97.93 E-value=5.1e-06 Score=50.68 Aligned_cols=35 Identities=23% Similarity=0.486 Sum_probs=27.3
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEEec
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRT 42 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R~ 42 (51)
...|+|..||+.++.. .....||.||+.+-.+.|.
T Consensus 130 ~~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~~~~~~ 164 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTL-PPGGVCPDCGSKVKLIPRK 164 (165)
T ss_dssp CCCEEESSSCCEESSC-CGGGBCTTTCCBEEECCCC
T ss_pred cEEEECCCCCCcccCC-CCCCcCCCCCCcceeCCcC
Confidence 4679999999999864 3446999999997555553
No 5
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=97.72 E-value=1.4e-05 Score=47.12 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCceEEEcCCCCCeeecCCCCee-EcCCCCCcEEEE
Q 035461 5 PEPVSYICGDCGMENTLKPGDVI-QCRECGYRILYK 39 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~~~~i-rC~~CG~RIlyK 39 (51)
..|..|+|.+||.++++... .. .||.||+..++-
T Consensus 69 ~~p~~~~C~~CG~~~e~~~~-~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNAL-DYGVCEKCHSKNVII 103 (119)
T ss_dssp EECCEEECSSSSCEECSCCS-TTCCCSSSSSCCCEE
T ss_pred eccceEEcCCCCCEEeCCCC-CCCcCccccCCCcEE
Confidence 35789999999999998653 45 899999986553
No 6
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=97.08 E-value=8.6e-05 Score=44.44 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.1
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~ 40 (51)
..|+|.+||.+|....+.+.+||.|++.-+-.+
T Consensus 66 ~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp CCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCC
T ss_pred ECcChhhCcCeecccCCCCCCCcCCCCCccCCc
Confidence 569999999999445567899999998755433
No 7
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=97.07 E-value=0.00025 Score=43.13 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=28.2
Q ss_pred CCceEEEcCCCCCeeecCC-----------CC---------eeEcCCCCCcEEEE
Q 035461 5 PEPVSYICGDCGMENTLKP-----------GD---------VIQCRECGYRILYK 39 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~-----------~~---------~irC~~CG~RIlyK 39 (51)
..|..++|.+||.+++++. .. ..+||.||+.=++-
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEV 120 (139)
T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEE
T ss_pred ecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEE
Confidence 3568899999999999865 21 68999999987663
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.58 E-value=0.001 Score=43.10 Aligned_cols=31 Identities=45% Similarity=0.940 Sum_probs=24.2
Q ss_pred EcCCCCCeeecC-------CCCeeEcCCCCCcEEEEEec
Q 035461 11 ICGDCGMENTLK-------PGDVIQCRECGYRILYKKRT 42 (51)
Q Consensus 11 ~C~~Cg~~~~~~-------~~~~irC~~CG~RIlyK~R~ 42 (51)
.|+.|+..+... ....++||+|| ||||....
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~Cg-RIL~~~~~ 237 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCG-RILYAEGA 237 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTC-CEEECSCC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCC-eeEEeCcc
Confidence 699999988742 34679999998 89987654
No 9
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=95.95 E-value=0.0035 Score=32.33 Aligned_cols=27 Identities=33% Similarity=0.723 Sum_probs=21.1
Q ss_pred EEEcCCCCCeeecCCCC---------eeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPGD---------VIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~---------~irC~~CG~R 35 (51)
.|+|..||...+...++ .-+||.||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 59999999998864333 3599999974
No 10
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=95.92 E-value=0.0034 Score=35.75 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=24.6
Q ss_pred CceEEEcCCCCCeeecCC-CCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLKP-GDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~-~~~irC~~CG~RI 36 (51)
+...|.|..||++..... .....|++||+.+
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 346899999999776653 4679999999864
No 11
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=95.77 E-value=0.0072 Score=37.63 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=21.7
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.+..|+|..||...+.+ .+-.||-||+
T Consensus 135 ~~~~~~C~~CG~i~~~~--~p~~CP~Cg~ 161 (170)
T 3pwf_A 135 IKKVYICPICGYTAVDE--APEYCPVCGA 161 (170)
T ss_dssp CSCEEECTTTCCEEESC--CCSBCTTTCC
T ss_pred CCCeeEeCCCCCeeCCC--CCCCCCCCCC
Confidence 34789999999998833 3459999996
No 12
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.31 E-value=0.0068 Score=31.98 Aligned_cols=28 Identities=39% Similarity=0.936 Sum_probs=22.5
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcEEE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRILY 38 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIly 38 (51)
..++|..||+.+. .....|..|||..|-
T Consensus 13 ~k~iCpkC~a~~~---~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNP---WGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEEC---TTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCC---CCceecCCCCCcccc
Confidence 6799999999943 356899999998553
No 13
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=95.19 E-value=0.011 Score=36.97 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=20.9
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
..|+|..||...+-+. .+-.||.||+.
T Consensus 154 ~~~~C~~CG~~~~g~~-~p~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYVHEGTG-APELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCEEEEEE-CCSBCTTTCCB
T ss_pred ceEEECCCCCEeeCCC-CCCCCCCCcCC
Confidence 5899999999987432 22399999984
No 14
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=94.98 E-value=0.03 Score=27.01 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=20.2
Q ss_pred ceEEEcCCCCCeeec--CCCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTL--KPGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~--~~~~~irC~~CG~ 34 (51)
.-.|+|..||..++. ..+.++.| ||-
T Consensus 4 ~~fY~C~~CGnivev~~~g~~~l~C--CG~ 31 (36)
T 1dxg_A 4 GDVYKCELCGQVVKVLEEGGGTLVC--CGE 31 (36)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEEE--TTE
T ss_pred ccEEEcCCCCcEEEEEeCCCcCEEe--CCc
Confidence 357999999999997 45567777 664
No 15
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=94.60 E-value=0.021 Score=31.71 Aligned_cols=34 Identities=26% Similarity=0.626 Sum_probs=27.1
Q ss_pred eEEEcCCCCCeeecCCC-CeeEcCCCCCcEEEEEecC
Q 035461 8 VSYICGDCGMENTLKPG-DVIQCRECGYRILYKKRTR 43 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~-~~irC~~CG~RIlyK~R~~ 43 (51)
..+.|. ||.-.-.+.+ ....|| ||.+|=++++..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ri 37 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRI 37 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSC
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEE
Confidence 357899 9998877754 679999 999998877653
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=94.44 E-value=0.031 Score=35.48 Aligned_cols=28 Identities=21% Similarity=0.365 Sum_probs=22.8
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
....|+|..||...+- ..+-.||.||+.
T Consensus 168 ~~~~~~C~~CG~i~~g--~~p~~CP~C~~~ 195 (202)
T 1yuz_A 168 DDKFHLCPICGYIHKG--EDFEKCPICFRP 195 (202)
T ss_dssp SCCEEECSSSCCEEES--SCCSBCTTTCCB
T ss_pred CCcEEEECCCCCEEcC--cCCCCCCCCCCC
Confidence 3468999999999874 456899999974
No 17
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=93.90 E-value=0.04 Score=29.04 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEcCCCCCeeecCCC----------------CeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPG----------------DVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~R 35 (51)
.|+|..||...+...+ +.-+||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 6999999999886432 33489999963
No 18
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=93.70 E-value=0.056 Score=28.15 Aligned_cols=27 Identities=30% Similarity=0.542 Sum_probs=21.0
Q ss_pred EEEcCCCCCeeecCCC----------------CeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPG----------------DVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~R 35 (51)
.|+|..||...+...+ +.-+||.||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 6999999999886432 33589999964
No 19
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=93.24 E-value=0.15 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=24.3
Q ss_pred ceEEEcCCCCCeeecC--------CCCeeEcCCCCCcEEE
Q 035461 7 PVSYICGDCGMENTLK--------PGDVIQCRECGYRILY 38 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~--------~~~~irC~~CG~RIly 38 (51)
...|.|..||+.|... ...+..|+.||.....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 4569999999988642 1357899999987644
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.19 E-value=0.042 Score=27.58 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=20.5
Q ss_pred EEEcCCCCC-eeecC-CCCeeEcCCCCCc
Q 035461 9 SYICGDCGM-ENTLK-PGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~-~~~~~-~~~~irC~~CG~R 35 (51)
.+.|..||. .+... ....+.|++||.-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 367999988 66554 3477999999973
No 21
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=92.97 E-value=0.093 Score=26.99 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=22.1
Q ss_pred EEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 9 SYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
.|.|..||+.|... ...+-.|+.||...
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F 42 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEE
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCc
Confidence 49999999999753 23578999999754
No 22
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=92.95 E-value=0.094 Score=29.29 Aligned_cols=30 Identities=23% Similarity=0.514 Sum_probs=23.7
Q ss_pred CceEEEcCCCCCeeecCCC-CeeEcCCCCCc
Q 035461 6 EPVSYICGDCGMENTLKPG-DVIQCRECGYR 35 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~-~~irC~~CG~R 35 (51)
+++.-.|.+|+..++.... -..+|+.||+-
T Consensus 34 ~~v~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 34 MTVDILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp CEEEEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred CEeEEECCCCCCCccCCceeecccCcCCCCc
Confidence 3467899999999998753 34699999964
No 23
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=92.85 E-value=0.063 Score=30.52 Aligned_cols=27 Identities=33% Similarity=0.731 Sum_probs=21.2
Q ss_pred eEEEcCCCCCeeecCCC----------------CeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLKPG----------------DVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~ 34 (51)
..|+|..||...+...+ +.-+||.||.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 58999999999886432 3358999996
No 24
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=92.83 E-value=0.061 Score=28.01 Aligned_cols=27 Identities=37% Similarity=0.792 Sum_probs=20.6
Q ss_pred EEEcCCCCCeeecCCC----------------CeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPG----------------DVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~R 35 (51)
.|+|..||...+...+ +.-+||.||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 5999999999875543 23489999963
No 25
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=92.75 E-value=0.053 Score=28.51 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=25.8
Q ss_pred eEEEcCCCCCeeec-CCCCeeEcCCCCCcEEEEEe
Q 035461 8 VSYICGDCGMENTL-KPGDVIQCRECGYRILYKKR 41 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~-~~~~~irC~~CG~RIlyK~R 41 (51)
....|.+||..+-+ ...+-..|..||+..++|..
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~~~~~ 51 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKAK 51 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCEECCCC
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEEEeCcc
Confidence 45789999985543 33578999999999877654
No 26
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=92.71 E-value=0.072 Score=29.28 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=21.2
Q ss_pred eEEEcCCCCCeeecCCC----------------CeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPG----------------DVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~R 35 (51)
..|+|..||...+...+ +.-+||.||..
T Consensus 6 ~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 6 GKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred ceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 36999999999885432 33489999963
No 27
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=92.70 E-value=0.074 Score=32.84 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.1
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.=.|+.|+.+|.+-.+....|.+|.++|
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V 95 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV 95 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchh
Confidence 3469999999999988999999999987
No 28
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=92.62 E-value=0.066 Score=30.79 Aligned_cols=27 Identities=33% Similarity=0.711 Sum_probs=20.8
Q ss_pred eEEEcCCCCCeeecCCC----------------CeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLKPG----------------DVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~ 34 (51)
..|+|..||...+...+ +.-+||.||.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 47999999998886422 3358999996
No 29
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.58 E-value=0.067 Score=33.08 Aligned_cols=31 Identities=26% Similarity=0.625 Sum_probs=24.5
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCcEE
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRIL 37 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIl 37 (51)
..+.=.|.+||....... ..++||+||..-.
T Consensus 137 Gvv~a~~~~~g~~m~~~~-~~~~cp~~g~~e~ 167 (179)
T 3m7n_A 137 GVLRALCSNCKTEMVREG-DILKCPECGRVEK 167 (179)
T ss_dssp EEEECBCTTTCCBCEECS-SSEECSSSCCEEC
T ss_pred CEEEecccccCCceEECC-CEEECCCCCCEEE
Confidence 345667889999987666 8899999998644
No 30
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=92.34 E-value=0.048 Score=33.92 Aligned_cols=26 Identities=31% Similarity=0.700 Sum_probs=22.7
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
-.|..|+.+..-+.++..-||+|||-
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hE 53 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHE 53 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEE
T ss_pred CCCCCCCCcceEecCCeEECCccccc
Confidence 35899999999888889999999985
No 31
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=92.22 E-value=0.065 Score=25.45 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=21.0
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
..|.|..||+.|... ...+..|+.||...
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 42 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAA 42 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEE
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchh
Confidence 358999999998743 23568999999753
No 32
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=92.15 E-value=0.099 Score=27.57 Aligned_cols=27 Identities=33% Similarity=0.688 Sum_probs=20.7
Q ss_pred EEEcCCCCCeeecCCC----------------CeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPG----------------DVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~----------------~~irC~~CG~R 35 (51)
.|+|..||...+...+ +.-+||.||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 5999999998876433 23499999964
No 33
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=92.11 E-value=0.034 Score=25.61 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=19.6
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCC
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECG 33 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG 33 (51)
..|.|..||+.|... ...+..|+.||
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence 458999999998642 23568899987
No 34
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=91.99 E-value=0.12 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=23.6
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-.|+.|+.++.+-.+....|.+|.++|
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~V 82 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNV 82 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred ccccccCCCcccccCCCCCCCCCCccc
Confidence 469999999987777889999999887
No 35
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=91.97 E-value=0.1 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.556 Sum_probs=23.4
Q ss_pred ceEEEcCCCCCeeecCC-----CCeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKP-----GDVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~-----~~~irC~~CG~RI 36 (51)
...|.|..||.++.+.. ..+..||.|+.+=
T Consensus 132 ~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 132 KAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRS 166 (279)
T ss_dssp EEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCC
T ss_pred EEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCC
Confidence 37899999998876542 2467899999874
No 36
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=91.70 E-value=0.11 Score=27.94 Aligned_cols=27 Identities=30% Similarity=0.801 Sum_probs=23.0
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcEE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRIL 37 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIl 37 (51)
...+|-.|++.+.+.+ .+|..|||.-|
T Consensus 18 ~k~ICrkC~ARnp~~A---~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRA---TKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTC---SSCTTTCCCCE
T ss_pred chhhhccccCcCCccc---ccccCCCCCCC
Confidence 5689999999988765 88999999855
No 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=91.58 E-value=0.082 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.791 Sum_probs=20.2
Q ss_pred EEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
|.|..||..|... ...+..|+.||...
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 39 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSF 39 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEE
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchh
Confidence 7899999988642 23568999999754
No 38
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=91.42 E-value=0.11 Score=29.53 Aligned_cols=25 Identities=20% Similarity=0.598 Sum_probs=18.1
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
..|.|..|++++...+ .||+||..+
T Consensus 17 ~~~~C~~C~~~~~~~a----fCPeCgq~L 41 (81)
T 2jrp_A 17 DTAHCETCAKDFSLQA----LCPDCRQPL 41 (81)
T ss_dssp SEEECTTTCCEEEEEE----ECSSSCSCC
T ss_pred CceECccccccCCCcc----cCcchhhHH
Confidence 4677999998876652 788777654
No 39
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.42 E-value=0.2 Score=25.77 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=18.2
Q ss_pred EcCCCCCeeec-CCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTL-KPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~-~~~~~irC~~CG~RI 36 (51)
-|.+||..+.. ...+-.+|+.||+-.
T Consensus 21 ~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 21 FCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp ECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cCCCCCCceEEecCCCeEECCCCCCEE
Confidence 48889874433 345778999999754
No 40
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=91.26 E-value=0.18 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.537 Sum_probs=22.3
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
..|.|..||+.|... ...+..|+.||...
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 47 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDT 47 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEE
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCcc
Confidence 459999999998742 23568999999764
No 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=91.11 E-value=0.1 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
|.|..||+.|... ...+..|+.||...
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 40 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEE
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 8899999988642 22468999999754
No 42
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=91.08 E-value=0.2 Score=25.03 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=23.0
Q ss_pred ceEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
...|.|..|++.|... ...+..|+.||...
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f 52 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEE
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCccc
Confidence 3569999999998642 23578999999754
No 43
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=90.22 E-value=0.21 Score=27.23 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.7
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
-.|+|..||+.|... ...+..|+.||...
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 66 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF 66 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence 349999999999853 23578999999764
No 44
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=89.75 E-value=0.41 Score=24.63 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.0
Q ss_pred eEEEcCCCCCeee
Q 035461 8 VSYICGDCGMENT 20 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~ 20 (51)
..|.|..|+..|.
T Consensus 6 ~~~~C~~C~~~f~ 18 (95)
T 2yt9_A 6 SGVACEICGKIFR 18 (95)
T ss_dssp SCEECSSSCCEES
T ss_pred CCeECCCCCCccC
Confidence 3466666666664
No 45
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=89.51 E-value=0.16 Score=25.44 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=23.3
Q ss_pred CceEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
....|.|..||+.|... ...+..|+.||...
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f 55 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEE
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchh
Confidence 34569999999998742 23568999999754
No 46
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.40 E-value=0.45 Score=23.43 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=23.3
Q ss_pred eEEEcCCCCCeeecC----------CCCeeEcC-CCCCcEEE
Q 035461 8 VSYICGDCGMENTLK----------PGDVIQCR-ECGYRILY 38 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~----------~~~~irC~-~CG~RIly 38 (51)
-.|.|..||+.|. . ...+..|+ .||.....
T Consensus 9 ~~~~C~~C~k~f~-~~~L~~H~~~~~~~p~~C~~~C~k~f~~ 49 (66)
T 2eod_A 9 RTQPCTYCTKEFV-FDTIQSHQYQCPRLPVACPNQCGVGTVA 49 (66)
T ss_dssp CEEECSSSCCEEE-HHHHHHHHHHCSSSEEECTTCCSCCEEE
T ss_pred CCeeccccCCccC-HHHHHHHHHHcCCcCccCCcccCccccc
Confidence 5699999999986 3 23578999 99987554
No 47
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=89.11 E-value=0.38 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 9 SYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
.|.|..||+.|... ...+..|+.||...
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f 41 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCcc
Confidence 38999999998742 23568999999653
No 48
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.09 E-value=0.13 Score=28.94 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.1
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
...=.|+.|+..+.+-.+....|+.|-++|
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV 52 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLV 52 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEEC
T ss_pred CCccchhhhCccccccccCCCcCcccChhh
Confidence 345679999999999888999999999886
No 49
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.02 E-value=0.19 Score=26.30 Aligned_cols=30 Identities=23% Similarity=0.604 Sum_probs=23.4
Q ss_pred eEEEcCCCCCeeecC---------CCCeeEcCCCCCcEE
Q 035461 8 VSYICGDCGMENTLK---------PGDVIQCRECGYRIL 37 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~---------~~~~irC~~CG~RIl 37 (51)
-.|.|..|+..|... ...++.|++||..+.
T Consensus 16 r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~ 54 (75)
T 2d9k_A 16 RLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVL 54 (75)
T ss_dssp CCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEE
T ss_pred cccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCc
Confidence 468999999999653 236899999998643
No 50
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=88.95 E-value=0.39 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.626 Sum_probs=16.7
Q ss_pred EEEcCCCCCeeecC-----------CCCeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLK-----------PGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~R 35 (51)
.|.|..|+..+... ...+..|+.||..
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 66 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKA 66 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCE
T ss_pred CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchh
Confidence 47777777776532 2245777777754
No 51
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=88.88 E-value=0.18 Score=23.46 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=20.5
Q ss_pred ceEEEcCCCCCeeecC-----------CCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTLK-----------PGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~ 34 (51)
...|.|..||+.|... ...+..|+.||.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3569999999998642 224578999983
No 52
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.45 Score=30.57 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=25.1
Q ss_pred CCceEEEcCCCCCeeecCC----C------CeeEcCCCCCcE
Q 035461 5 PEPVSYICGDCGMENTLKP----G------DVIQCRECGYRI 36 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~----~------~~irC~~CG~RI 36 (51)
-++....|..||.++.... . ..+.||.|+..+
T Consensus 18 c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 18 TVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp CCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred CceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 4678999999999888651 1 368899999864
No 53
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=88.63 E-value=0.52 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=22.1
Q ss_pred eEEEcCCCCCeeecC-------------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-------------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------------~~~~irC~~CG~RI 36 (51)
..|.|..||+.|... ...+..|+.||...
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f 50 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEE
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCcc
Confidence 569999999998631 22568999999754
No 54
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=88.62 E-value=0.15 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCeeecCCCCee-EcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKPGDVI-QCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~i-rC~~CG~RI 36 (51)
...|.|..||++--......| .|..||..+
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 357999999988433344444 999999754
No 55
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=88.50 E-value=0.3 Score=27.72 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCCeeEcCCCCCcEEEEE
Q 035461 23 PGDVIQCRECGYRILYKK 40 (51)
Q Consensus 23 ~~~~irC~~CG~RIlyK~ 40 (51)
....+.|||||-+..+|.
T Consensus 50 ~~g~~~CpYCg~~f~l~~ 67 (80)
T 2jvm_A 50 ETGFVECGYCDRRYIHES 67 (80)
T ss_dssp TTCEEECSSSSCEEEEHH
T ss_pred CCCeEECCCCCCEEEecC
Confidence 357899999999887763
No 56
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=88.42 E-value=0.61 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.412 Sum_probs=25.8
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEE
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~ 40 (51)
....++|-.|-+.. +...-.-||.||+.-|.|.
T Consensus 12 k~~iLrC~aCf~~t--~~~~k~FCp~CGn~TL~Rv 44 (79)
T 2con_A 12 RSYILRCHGCFKTT--SDMNRVFCGHCGNKTLKKV 44 (79)
T ss_dssp CCEEEECSSSCCEE--SCSSCCSCSSSCCSCCEEE
T ss_pred eeeeeEecccceEC--CCcccccccccCcccceEE
Confidence 45789999998875 3335688999999988774
No 57
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=88.21 E-value=0.4 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.0
Q ss_pred ceEEEc--CCCCCeeecC---C-----CCeeEcCCCCCc
Q 035461 7 PVSYIC--GDCGMENTLK---P-----GDVIQCRECGYR 35 (51)
Q Consensus 7 ~~~Y~C--~~Cg~~~~~~---~-----~~~irC~~CG~R 35 (51)
...|.| ..||.++... . ..+..||.|+.+
T Consensus 139 ~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~ 177 (268)
T 2vl6_A 139 KATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268)
T ss_dssp ECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred EEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCC
Confidence 367999 9999988766 2 246789999986
No 58
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=88.06 E-value=0.5 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=15.2
Q ss_pred EEEcCCCCCeeecC-----------CCCeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLK-----------PGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~R 35 (51)
.|.|..||..|... ...+..|+.||..
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 71 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCch
Confidence 36666666666532 1234667666654
No 59
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=87.56 E-value=0.24 Score=29.34 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCeeecCCCCe-eEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKPGDV-IQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~-irC~~CG~RI 36 (51)
...|.|..||+.---....+ -.|..||..+
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 35799999998854333344 4999999754
No 60
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=87.44 E-value=0.56 Score=27.86 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=19.5
Q ss_pred ceEEEcCCCCCeeecC--CCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTLK--PGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~--~~~~irC~~CG~ 34 (51)
...|+|..||..++.- .+..+.| ||-
T Consensus 5 ~~fYkC~~CGnivev~~~g~~~l~C--CG~ 32 (126)
T 1vzi_A 5 LQVYKCEVCGNIVEVLNGGIGELVC--CNQ 32 (126)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEEE--TTE
T ss_pred CcEEEcCCCCeEEEEEcCCCcceec--CCc
Confidence 4689999999999853 4456777 664
No 61
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.27 E-value=0.5 Score=23.75 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=22.0
Q ss_pred eEEEcCCCCCeeecC-----------CC--CeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PG--DVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~--~~irC~~CG~RI 36 (51)
..|.|..|++.|... .. .+..|+.||...
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f 55 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEE
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCcc
Confidence 459999999998742 22 468999999754
No 62
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=87.03 E-value=0.65 Score=26.70 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=19.0
Q ss_pred ceEEEcCCCCCeeecC-----------CCCeeEcCCCCCc
Q 035461 7 PVSYICGDCGMENTLK-----------PGDVIQCRECGYR 35 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~R 35 (51)
...|.|..||+.|... ...+-.|+.||..
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~ 59 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKV 59 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCE
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCee
Confidence 3568888888877642 1235678888754
No 63
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=86.98 E-value=0.33 Score=27.98 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=15.4
Q ss_pred cCCCCeeEcCCCCCcEEEEE
Q 035461 21 LKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 21 ~~~~~~irC~~CG~RIlyK~ 40 (51)
+...+.+.|||||-+..+|.
T Consensus 43 i~~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 43 MGSTDEKICPYCSTLYRYDP 62 (87)
T ss_dssp CTTCCEECCTTTCCEEECCT
T ss_pred cCCCCeEECCCCCCEeEcCC
Confidence 34457899999999887764
No 64
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.61 E-value=0.84 Score=24.16 Aligned_cols=11 Identities=45% Similarity=1.011 Sum_probs=5.3
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..|+..|.
T Consensus 38 ~~C~~C~~~f~ 48 (110)
T 2csh_A 38 YGCGVCGKKFK 48 (110)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCcccC
Confidence 44555554443
No 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.48 E-value=0.46 Score=23.86 Aligned_cols=30 Identities=27% Similarity=0.549 Sum_probs=22.7
Q ss_pred ceEEEcCCCCCeeecC--------------CCCeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLK--------------PGDVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~--------------~~~~irC~~CG~RI 36 (51)
...|.|..||+.|... ...+..|+.||...
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f 48 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEE
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchh
Confidence 3569999999998642 13568999999764
No 66
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=86.47 E-value=0.58 Score=28.16 Aligned_cols=31 Identities=23% Similarity=0.599 Sum_probs=22.5
Q ss_pred CceEEEcCCCCCeeecC-CCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLK-PGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~-~~~~irC~~CG~RI 36 (51)
+...|.|..||++.-.. ....-.|+.||+.+
T Consensus 57 q~akytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 57 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred hccCCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 34679999999853222 44678999999864
No 67
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=86.40 E-value=0.38 Score=26.40 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.1
Q ss_pred CCCeeEcCCCCCcEEEEE
Q 035461 23 PGDVIQCRECGYRILYKK 40 (51)
Q Consensus 23 ~~~~irC~~CG~RIlyK~ 40 (51)
....+.|||||-+...|.
T Consensus 37 ~~g~~~CpYCg~~f~l~~ 54 (67)
T 2jrr_A 37 DTGWVECPYCDCKYVLKG 54 (67)
T ss_dssp TTSEEEETTTTEEEEETT
T ss_pred CCCeEECCCCCCEEEECC
Confidence 347899999998877664
No 68
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.32 E-value=0.21 Score=28.49 Aligned_cols=29 Identities=24% Similarity=0.615 Sum_probs=20.8
Q ss_pred eEEEcCCCCCeeecCCC-CeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLKPG-DVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~-~~irC~~CG~RI 36 (51)
..|.|..||+.---... .--.|..||..+
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 57999999988433333 445999999865
No 69
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=85.86 E-value=0.71 Score=29.47 Aligned_cols=29 Identities=31% Similarity=0.670 Sum_probs=20.8
Q ss_pred eEEEcCCCCCeeecC-------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~~~irC~~CG~RI 36 (51)
....|..|+...+.+ ....-+||.||..+
T Consensus 120 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~l 155 (246)
T 1yc5_A 120 EEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLI 155 (246)
T ss_dssp EEEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBE
T ss_pred ceeEcCCCCCCCcHHHHHHHhccCCCCCCCCCCCcc
Confidence 456799999987642 22356999999853
No 70
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=85.61 E-value=1.7 Score=23.61 Aligned_cols=29 Identities=31% Similarity=0.739 Sum_probs=24.0
Q ss_pred eEEEcCCCCCeeecC--CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--~~~~irC~~CG~RI 36 (51)
|.=+|.+|+.+..+- +...+.|..||.-+
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEE
Confidence 888999999988764 55789999999644
No 71
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.57 E-value=0.75 Score=23.61 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=6.2
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..|+..|.
T Consensus 37 ~~C~~C~~~f~ 47 (96)
T 2dmd_A 37 YKCKTCDYAAA 47 (96)
T ss_dssp EECSSSCCEES
T ss_pred EeCCCCCCccC
Confidence 55666655554
No 72
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=85.49 E-value=0.49 Score=24.70 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=17.4
Q ss_pred EcCCCCC-eeecC-CCCeeEcCCCCCc
Q 035461 11 ICGDCGM-ENTLK-PGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~-~~~~~-~~~~irC~~CG~R 35 (51)
.|.+||. .+... ....+.|..||.=
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCE
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCE
Confidence 6999987 33333 3467999999853
No 73
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=85.36 E-value=0.7 Score=27.53 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=16.8
Q ss_pred CceEEEcCC-CCCeeec--CCCCeeEcCCCCC
Q 035461 6 EPVSYICGD-CGMENTL--KPGDVIQCRECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~-Cg~~~~~--~~~~~irC~~CG~ 34 (51)
+...|+|.. ||..++. ..+..+.| ||-
T Consensus 4 ~~~fYkC~~~CGnivev~~~g~~~l~C--CG~ 33 (128)
T 1y07_A 4 ELSFFLQKESAGFFLGMDAPAGSSVAC--GSE 33 (128)
T ss_dssp CEEEECC-----CEEEESCCTTCEEEE--TTE
T ss_pred cCcEEECCCCCCCEEEEEcCCCcceee--cCc
Confidence 456899999 9999987 34466777 664
No 74
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=85.16 E-value=0.74 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=19.1
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
..|.|..||..|... ...+..|+.||...
T Consensus 65 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 104 (124)
T 2dlq_A 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF 104 (124)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred CCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence 457888888877642 22457888887653
No 75
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=85.15 E-value=0.24 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.614 Sum_probs=21.2
Q ss_pred ceEEEcCCCCCeeecCCC-CeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKPG-DVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~-~~irC~~CG~RI 36 (51)
...|.|..||+.---... .--.|..||..+
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp HSCBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred hccccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 357999999988433333 444999999865
No 76
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=84.81 E-value=0.43 Score=26.51 Aligned_cols=32 Identities=28% Similarity=0.757 Sum_probs=23.2
Q ss_pred CCceEEEcCCCCCeeecC-CCCeeEcCCCCCcE
Q 035461 5 PEPVSYICGDCGMENTLK-PGDVIQCRECGYRI 36 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~-~~~~irC~~CG~RI 36 (51)
.+...|.|..||++--.. ....-.|..||..+
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 356789999999853332 34568899999764
No 77
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=84.78 E-value=1.4 Score=24.24 Aligned_cols=29 Identities=31% Similarity=0.797 Sum_probs=23.5
Q ss_pred eEEEcCCCCCeeecC--CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--~~~~irC~~CG~RI 36 (51)
|.=+|.+|+.+..+- +...+.|..||.-+
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 667899999988764 56789999999644
No 78
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=84.75 E-value=0.95 Score=23.31 Aligned_cols=23 Identities=26% Similarity=0.748 Sum_probs=17.9
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-|..||..+ ...+++|..||+.+
T Consensus 24 ~C~~C~~~i---~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 24 WCDLCGREV---LRQALRCANCKFTC 46 (59)
T ss_dssp ECTTTCSEE---CSCCEECTTTSCEE
T ss_pred Echhcchhh---hhCccEeCCCCCeE
Confidence 488898887 45678999998754
No 79
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=84.72 E-value=0.67 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=21.7
Q ss_pred CceEEEcCCCCCeeecC------------CCCeeEcCCCCCc
Q 035461 6 EPVSYICGDCGMENTLK------------PGDVIQCRECGYR 35 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~------------~~~~irC~~CG~R 35 (51)
....|.|..||+.|... ...+..|+.||..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~ 50 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCS
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 34569999999998632 1245789999965
No 80
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=84.67 E-value=0.7 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.6
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~ 40 (51)
+.-+|.+||+.+-... ..||.||..-+--.
T Consensus 46 ~~~rC~~CG~~~~PPr---~~Cp~C~s~~~~~v 75 (145)
T 3irb_A 46 IGSKCSKCGRIFVPAR---SYCEHCFVKIENYV 75 (145)
T ss_dssp EEEECTTTCCEEESCC---SEETTTTEECCEEE
T ss_pred EEEEeCCCCcEEcCch---hhCcCCCCCceeee
Confidence 6789999999986653 56999999876543
No 81
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=84.59 E-value=0.47 Score=25.33 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.5
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
-|..|+...+.+ .||+||+.
T Consensus 3 AC~~C~~v~~~~-----~CpnC~~~ 22 (59)
T 3lpe_B 3 ACLKCKYLTNDE-----ICPICHSP 22 (59)
T ss_dssp EETTTCBEESSS-----BCTTTCCB
T ss_pred ccccCCcccCCC-----CCCCCCCC
Confidence 488999886544 69999983
No 82
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.55 E-value=0.72 Score=20.81 Aligned_cols=15 Identities=27% Similarity=0.880 Sum_probs=12.0
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 ~~~~C~~C~k~f~~~ 25 (46)
T 2ytg_A 11 KPFKCGECGKSYNQR 25 (46)
T ss_dssp CSEECTTTCCEESSS
T ss_pred CCeECCCCCcccCCH
Confidence 459999999998753
No 83
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=84.52 E-value=0.25 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=21.0
Q ss_pred ceEEEcCCCCCeeecCCC-CeeEcCCCCCcE
Q 035461 7 PVSYICGDCGMENTLKPG-DVIQCRECGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~-~~irC~~CG~RI 36 (51)
...|.|..||+.---... .--.|..||..+
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 357999999987433333 344999999765
No 84
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=84.17 E-value=0.4 Score=24.13 Aligned_cols=31 Identities=29% Similarity=0.670 Sum_probs=22.8
Q ss_pred CceEEEcCCCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
+...|.|..||+.|... ...+..|+.||...
T Consensus 15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 56 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56 (77)
T ss_dssp CSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEE
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCcc
Confidence 34569999999998732 12468999999754
No 85
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.13 E-value=0.71 Score=26.72 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=18.8
Q ss_pred cCCCCCeeecCCCC-----eeEcCCCCCc
Q 035461 12 CGDCGMENTLKPGD-----VIQCRECGYR 35 (51)
Q Consensus 12 C~~Cg~~~~~~~~~-----~irC~~CG~R 35 (51)
|.+||..+.++... ...|+.|||.
T Consensus 7 Cp~Cgn~L~~~~~~~~~~~~~~C~~C~y~ 35 (113)
T 3h0g_I 7 CIECNNMLYPREDKVDRVLRLACRNCDYS 35 (113)
T ss_dssp CSSSCCCCEECCCTTTCCCCEECSSSCCE
T ss_pred CcCCCCEeeEcccCCCCeeEEECCCCCCe
Confidence 88999988776432 5899999984
No 86
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=84.09 E-value=0.79 Score=24.67 Aligned_cols=23 Identities=26% Similarity=0.748 Sum_probs=17.6
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-|..||..+ ...+++|..||+.+
T Consensus 37 ~C~~C~~~l---~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 37 WCDLCGREV---LRQALRCANCKFTC 59 (72)
T ss_dssp BCTTTSSBC---SSCCEECTTSSCEE
T ss_pred chhhhhHHH---HhCcCccCCCCCee
Confidence 388888887 45678999998754
No 87
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=83.81 E-value=0.45 Score=27.10 Aligned_cols=21 Identities=29% Similarity=0.703 Sum_probs=16.7
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-|.+|+..++-+ .||+||+.-
T Consensus 25 AC~~C~~v~~~d-----~CPnCgs~~ 45 (81)
T 3p8b_A 25 ACRHCHYITSED-----RCPVCGSRD 45 (81)
T ss_dssp EETTTCBEESSS-----SCTTTCCCC
T ss_pred HHhhCCCccCCC-----CCCCCCCCc
Confidence 599999997543 599999854
No 88
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.81 E-value=0.85 Score=20.48 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.9
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2epw_A 11 KPCKCTECGKAFCWK 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCCCCCCccCCH
Confidence 459999999998753
No 89
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=83.80 E-value=2.6 Score=24.11 Aligned_cols=34 Identities=29% Similarity=0.597 Sum_probs=25.7
Q ss_pred CCCCceEEEcCCCCCeeecC-----C-CCeeEcCCCCCcEE
Q 035461 3 PQPEPVSYICGDCGMENTLK-----P-GDVIQCRECGYRIL 37 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~-----~-~~~irC~~CG~RIl 37 (51)
...+...|-|- ||..|.+. . ...+.|+.|.=.|-
T Consensus 17 e~~~~y~ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~Ik 56 (89)
T 2jr7_A 17 EDSETYFYPCP-CGDNFSITKEDLENGEDVATCPSCSLIIK 56 (89)
T ss_dssp TTTTEEEEECT-TSSEEEEEHHHHHHTCCEEECTTTCCEEE
T ss_pred CCCCEEEEcCC-CCCEEEECHHHHhCCCEEEECCCCccEEE
Confidence 34456789995 99999985 2 25799999997663
No 90
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=83.78 E-value=0.87 Score=26.92 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=14.5
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|.|..|+.++... ..||+|+..
T Consensus 48 ~~hC~~C~~~f~~~----a~CPdC~q~ 70 (101)
T 2jne_A 48 HARCRSCGEFIEMK----ALCPDCHQP 70 (101)
T ss_dssp EEEETTTCCEEEEE----EECTTTCSB
T ss_pred EEECccccchhhcc----ccCcchhhH
Confidence 45577777666554 567777654
No 91
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=83.59 E-value=0.95 Score=29.57 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=20.4
Q ss_pred eEEEcCCCCCeeecC----------CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~----------~~~~irC~~CG~RI 36 (51)
....|..|+...... ....-+||.||..+
T Consensus 135 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~l 173 (289)
T 1q1a_A 135 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 173 (289)
T ss_dssp EEEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBE
T ss_pred CceEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEE
Confidence 356799999987642 11346999999854
No 92
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=83.56 E-value=0.63 Score=18.49 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=10.4
Q ss_pred EEEcCCCCCeeec
Q 035461 9 SYICGDCGMENTL 21 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~ 21 (51)
.|.|..||+.|..
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 4899999998753
No 93
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.49 E-value=0.89 Score=20.49 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2yu8_A 11 KPYKCNECGKVFTQN 25 (46)
T ss_dssp SSEECSSSCCEESSS
T ss_pred CCeECCcCCchhCCH
Confidence 458999999988753
No 94
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=83.48 E-value=1.9 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=24.4
Q ss_pred CceEEEcCCCCCeeecCCC-----CeeEcCCCCCcEE
Q 035461 6 EPVSYICGDCGMENTLKPG-----DVIQCRECGYRIL 37 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~-----~~irC~~CG~RIl 37 (51)
+...|.|- ||..+.+... ..+.|+.|.-.|.
T Consensus 109 ~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~ 144 (155)
T 2l6l_A 109 HSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIE 144 (155)
T ss_dssp TEEEEECS-SSCEEEEETTHHHHCCEEECSSSSCEEE
T ss_pred cEEEEcCC-CCCeEEecHHHhCCCCEEECCCCceEEE
Confidence 45789995 9999998643 5799999996654
No 95
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=83.41 E-value=0.63 Score=18.53 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.3
Q ss_pred EEEcCCCCCeeec
Q 035461 9 SYICGDCGMENTL 21 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~ 21 (51)
.|.|..||+.|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvh_A 3 PFSCSLCPQRSRD 15 (27)
T ss_dssp CEECSSSSCEESS
T ss_pred CccCCCcChhhCC
Confidence 3889999988753
No 96
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=83.40 E-value=0.97 Score=28.92 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=20.9
Q ss_pred eEEEcCCCCCeeecCC----CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLKP----GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~----~~~irC~~CG~RI 36 (51)
....|..|+...+.+. ...-+||.||..+
T Consensus 120 ~~~~C~~C~~~~~~~~~~~~~~~p~C~~Cgg~l 152 (249)
T 1m2k_A 120 RVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLL 152 (249)
T ss_dssp EEEEESSSSCEEECSSCCCSSSCCBCSSSSSBE
T ss_pred ceeEeCCCCCcccchhhccCCCCCCCCCCCCCc
Confidence 3567999999876532 2246999999864
No 97
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=83.37 E-value=0.88 Score=25.46 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=13.0
Q ss_pred cCCCCeeEcCCCCCcEEE
Q 035461 21 LKPGDVIQCRECGYRILY 38 (51)
Q Consensus 21 ~~~~~~irC~~CG~RIly 38 (51)
+..+.+-||++||+-...
T Consensus 51 l~~g~~~RC~eCG~~fkL 68 (80)
T 2odx_A 51 PTVNEVARCWECGSVYKL 68 (80)
T ss_dssp CCTTCEEECSSSCCEEEE
T ss_pred ecCCCCeECCCCCeEEEE
Confidence 456677899999985443
No 98
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.99 E-value=0.65 Score=20.91 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eme_A 11 KPYVCDYCGKAFGL 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCChhhCC
Confidence 45999999998864
No 99
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=82.80 E-value=1.2 Score=21.81 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=21.8
Q ss_pred eEEEcC--CCCCeeecC-----------CCCeeEcCCCCCcE
Q 035461 8 VSYICG--DCGMENTLK-----------PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~~~-----------~~~~irC~~CG~RI 36 (51)
-.|.|. .||+.|... ...+..|+.||...
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 59 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEE
T ss_pred CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchh
Confidence 459996 799998642 23568999999754
No 100
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=82.73 E-value=0.72 Score=18.36 Aligned_cols=12 Identities=42% Similarity=0.958 Sum_probs=9.9
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 889999988764
No 101
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=82.67 E-value=1.1 Score=25.01 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=24.2
Q ss_pred CceEEEcCCCCCeeecC---CCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLK---PGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~---~~~~irC~~CG~RI 36 (51)
+.+.+.|..||+.+++. ..+...|..||..+
T Consensus 2 ~~~~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~ 35 (148)
T 3p2a_A 2 NAMNTVCTACMATNRLPEERIDDGAKCGRCGHSL 35 (148)
T ss_dssp CEEEEECTTTCCEEEEESSCSCSCCBCTTTCCBT
T ss_pred CccEEECcccccccCCCCcccccCCcchhcCCcc
Confidence 45789999999999875 34567799998764
No 102
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=82.28 E-value=0.73 Score=18.19 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.2
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..||+.|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 88999998875
No 103
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.16 E-value=0.77 Score=20.72 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2yso_A 11 KSHQCRECGEIFFQ 24 (46)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEEccccChhhCC
Confidence 45999999998874
No 104
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=82.03 E-value=1.6 Score=21.74 Aligned_cols=29 Identities=24% Similarity=0.606 Sum_probs=21.0
Q ss_pred eEEEcCCCCCeeecC-----------CC----CeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-----------PG----DVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~----~~irC~~CG~RI 36 (51)
..|.|..|++.|... .. .+..|+.||...
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f 57 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEE
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChh
Confidence 459999999988632 11 358999999754
No 105
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=81.97 E-value=1 Score=27.14 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCCcEE
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGYRIL 37 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIl 37 (51)
-..-+|.+||+..-... ..||.||..-+
T Consensus 45 L~~~rC~~CG~~~fPPr---~~Cp~C~s~~~ 72 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPAR---SYCEHCFVKIE 72 (145)
T ss_dssp CEEEECTTTCCEEESCC---SEETTTTEECC
T ss_pred EEEEEECCCCcEEeCCC---CCCCCCCCCcc
Confidence 36789999999875543 47999998743
No 106
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.87 E-value=0.7 Score=20.93 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2em5_A 11 KSHQCHECGRGFTL 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCcCCCccCC
Confidence 45999999999874
No 107
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.69 E-value=0.81 Score=20.64 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ene_A 11 KPYKCNECGKVFRH 24 (46)
T ss_dssp SSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45999999998874
No 108
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=81.60 E-value=0.81 Score=18.20 Aligned_cols=13 Identities=15% Similarity=0.513 Sum_probs=10.2
Q ss_pred EEcCCCCCeeecC
Q 035461 10 YICGDCGMENTLK 22 (51)
Q Consensus 10 Y~C~~Cg~~~~~~ 22 (51)
|.|..||+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 1rik_A 3 FACPECPKRFMRS 15 (29)
T ss_dssp EECSSSSCEESCS
T ss_pred ccCCCCCchhCCH
Confidence 8899999887643
No 109
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=81.46 E-value=1.5 Score=21.23 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=18.7
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|.-|+..+---...+.+|..|+..+
T Consensus 13 ~C~~C~~~l~g~~~qg~~C~~C~~~~ 38 (50)
T 1ptq_A 13 FCDHCGSLLWGLVKQGLKCEDCGMNV 38 (50)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CcCCCCceeeccCCccCEeCCCCCeE
Confidence 48888887643345789999998753
No 110
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=81.36 E-value=1.3 Score=22.48 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=5.3
Q ss_pred eEEEcCCCCCe
Q 035461 8 VSYICGDCGME 18 (51)
Q Consensus 8 ~~Y~C~~Cg~~ 18 (51)
..|.|.+||..
T Consensus 42 ~fy~C~~Cg~~ 52 (57)
T 1qyp_A 42 IFYKCTKCGHT 52 (57)
T ss_dssp EEEEESSSCCE
T ss_pred EEEEcCCCCCE
Confidence 44555555443
No 111
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.27 E-value=1.1 Score=20.29 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=11.8
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em8_A 10 EKPYKCVECGKGYKR 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeECcccCchhCC
Confidence 345999999998874
No 112
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=81.20 E-value=2.2 Score=23.19 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=20.9
Q ss_pred EEEcCCCCCeeecCCC-CeeEcCCCCCcEE
Q 035461 9 SYICGDCGMENTLKPG-DVIQCRECGYRIL 37 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~-~~irC~~CG~RIl 37 (51)
.+-|.+|+..+..... ..+.||.||+..=
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC 54 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFC 54 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccc
Confidence 4448899998766543 4589999998653
No 113
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.07 E-value=0.82 Score=20.62 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eml_A 11 KPYECSVCGKAFSH 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCcCCccCC
Confidence 45999999998874
No 114
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=81.06 E-value=0.62 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.7
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 889999988753
No 115
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=80.93 E-value=0.7 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=21.6
Q ss_pred eEEEcCCCCCeeecCC---------CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLKP---------GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~---------~~~irC~~CG~RI 36 (51)
-.|.|..||+.|.... ..+-.|+.||...
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f 110 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEF 110 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBC
T ss_pred CCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCccc
Confidence 3499999999986431 3557899999754
No 116
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=80.85 E-value=1.4 Score=25.46 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=6.0
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..||..|.
T Consensus 134 ~~C~~C~~~f~ 144 (190)
T 2i13_A 134 YKCPECGKSFS 144 (190)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 55555555554
No 117
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.80 E-value=0.8 Score=20.74 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 11 RPYGCNECGKNFGR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCEEccccCcccCC
Confidence 45999999998874
No 118
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.76 E-value=0.69 Score=20.82 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emm_A 11 RPHKCNECGKSFIQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCCCCChhhCC
Confidence 45899999998874
No 119
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.74 E-value=1.8 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.518 Sum_probs=11.2
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 7 ~k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 7 GHLYYCSQCHYSSIT 21 (37)
T ss_dssp SCEEECSSSSCEEEC
T ss_pred CcCeECCCCCcccCC
Confidence 346889999888764
No 120
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=80.62 E-value=0.88 Score=20.44 Aligned_cols=14 Identities=29% Similarity=0.707 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em9_A 11 KPYNCKECGKSFRW 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCccccccCC
Confidence 45899999998874
No 121
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.61 E-value=0.9 Score=20.47 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emp_A 11 KPYMCNECGKAFSV 24 (46)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCeECCCCCchhCC
Confidence 45899999998864
No 122
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=80.57 E-value=1.5 Score=28.13 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=20.1
Q ss_pred eEEEcCCCCCeeecC-------CCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLK-------PGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~~~irC~~CG~ 34 (51)
....|..||.....+ ....-+||.||.
T Consensus 122 ~~~~C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg 155 (253)
T 1ma3_A 122 DKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS 155 (253)
T ss_dssp EEEEETTTCCEEEGGGTHHHHHTTCCCCCTTTCC
T ss_pred CeeeeCCCCCcCcHHHHHHHhccCCCCCCCCCCC
Confidence 456799999987653 223469999998
No 123
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.35 E-value=0.85 Score=20.55 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
-.|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em7_A 11 KPYKCEECGKGFIC 24 (46)
T ss_dssp CSEECSSSCCEESC
T ss_pred cCccCCCccchhCC
Confidence 45899999998874
No 124
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=80.35 E-value=1.3 Score=25.61 Aligned_cols=17 Identities=29% Similarity=0.741 Sum_probs=12.5
Q ss_pred cCCCCeeEcCCCCCcEE
Q 035461 21 LKPGDVIQCRECGYRIL 37 (51)
Q Consensus 21 ~~~~~~irC~~CG~RIl 37 (51)
+..+.+-|||+||+-..
T Consensus 74 l~~g~~~RC~eCG~~fk 90 (98)
T 1v54_F 74 LHKGEAQRCPSCGTHYK 90 (98)
T ss_dssp EESSSCEECTTTCCEEE
T ss_pred EeCCCceECCCCCeEEE
Confidence 34567889999998433
No 125
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.34 E-value=0.62 Score=21.06 Aligned_cols=14 Identities=29% Similarity=0.679 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ysp_A 11 KPYKCEKCGKGYNS 24 (46)
T ss_dssp CSEEETTTTEEESC
T ss_pred CCeECCCCCCccCC
Confidence 45999999998874
No 126
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=80.19 E-value=3.9 Score=22.94 Aligned_cols=34 Identities=32% Similarity=0.660 Sum_probs=25.5
Q ss_pred CCCCceEEEcCCCCCeeecC-----CC-CeeEcCCCCCcEE
Q 035461 3 PQPEPVSYICGDCGMENTLK-----PG-DVIQCRECGYRIL 37 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~-----~~-~~irC~~CG~RIl 37 (51)
...+...|-|- ||..|.+. .+ ..+.|+.|.-.|-
T Consensus 24 e~~~~y~y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I~ 63 (83)
T 1wge_A 24 EDSETYFYPCP-CGDNFAITKEDLENGEDVATCPSCSLIIK 63 (83)
T ss_dssp TTTTEEEECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred cCCCEEEEeCC-CCCEEEECHHHHhCCCEEEECCCCceEEE
Confidence 34456789995 99999985 22 5799999997653
No 127
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.05 E-value=0.91 Score=20.45 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emy_A 11 NPYECHECGKAFSR 24 (46)
T ss_dssp CCEECSSSCCEESS
T ss_pred cCcCCCCCCcccCc
Confidence 45999999998874
No 128
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=81.17 E-value=0.35 Score=19.19 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=10.6
Q ss_pred EEEcCCCCCeeecC
Q 035461 9 SYICGDCGMENTLK 22 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~ 22 (51)
.|.|..||+.|.-.
T Consensus 2 p~~C~~C~k~f~~~ 15 (26)
T 2lvu_A 2 PYVCERCGKRFVQS 15 (26)
Confidence 38899998887654
No 129
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.80 E-value=1 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 34999999998864
No 130
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=79.69 E-value=3.7 Score=23.28 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=23.5
Q ss_pred eEEEcCCCCCeeecC--CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--~~~~irC~~CG~RI 36 (51)
|.=+|.+|+.+..+- +...|.|..||.-+
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEE
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEE
Confidence 666999999988764 55789999999643
No 131
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.63 E-value=0.74 Score=20.78 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2en1_A 11 KPFKCEECGKRFTQ 24 (46)
T ss_dssp CSEEETTTTEEESS
T ss_pred CCeeCCCCCcccCC
Confidence 45999999998874
No 132
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.29 E-value=1 Score=20.27 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytd_A 11 KPYKCSECGKAFHR 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCCeeCC
Confidence 45899999998874
No 133
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=79.21 E-value=0.69 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=16.1
Q ss_pred eEEEcCCCCCeeecC-----------CCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLK-----------PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~R 35 (51)
..|.|..|+..|... ...+..|+.||..
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 54 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKA 54 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCB
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccch
Confidence 456777777766431 1244667777654
No 134
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=79.17 E-value=0.49 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.2
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 788888887753
No 135
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=79.10 E-value=0.86 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=20.9
Q ss_pred CCCceEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 4 QPEPVSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
+++....+|..|++.+.+. +.+| .||.-
T Consensus 10 ~~k~~~~rC~~C~kkvgl~---~f~C-rCg~~ 37 (64)
T 1wfh_A 10 SPPQRPNRCTVCRKRVGLT---GFMC-RCGTT 37 (64)
T ss_dssp CCCSSCCCCTTTCCCCCTT---CEEC-SSSCE
T ss_pred CCCCcCCcChhhCCccCcc---CEEe-ecCCE
Confidence 4455668999999987765 5889 58864
No 136
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.97 E-value=1.1 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.8
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2eq0_A 10 EKPYKCHECGKVFRR 24 (46)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CCCeECCCCCchhCC
Confidence 345999999998874
No 137
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=78.93 E-value=2.5 Score=23.80 Aligned_cols=34 Identities=29% Similarity=0.649 Sum_probs=25.3
Q ss_pred CCCCceEEEcCCCCCeeecC-----CC-CeeEcCCCCCcEE
Q 035461 3 PQPEPVSYICGDCGMENTLK-----PG-DVIQCRECGYRIL 37 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~-----~~-~~irC~~CG~RIl 37 (51)
...+...|-|- ||..|.+. .+ ..+.|+.|.-.|-
T Consensus 17 e~~~~y~ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I~ 56 (83)
T 1yop_A 17 PENQMFTYPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMID 56 (83)
T ss_dssp TTTTEEEEEET-TTEEEEEEHHHHHTTCCEEECSSSCCEEE
T ss_pred CCCCEEEEeCC-CCCeEEECHHHHhCCCEEEECCCCccEEE
Confidence 33455789995 99999875 32 5799999997653
No 138
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=78.79 E-value=1.4 Score=25.34 Aligned_cols=26 Identities=27% Similarity=0.646 Sum_probs=16.9
Q ss_pred EEEcCCCCCee-ecCCCCeeEcCCCCCc
Q 035461 9 SYICGDCGMEN-TLKPGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~-~~~~~~~irC~~CG~R 35 (51)
.|.|+ |+... ++...+...|+.||..
T Consensus 48 FFkC~-C~~Rt~sl~r~P~~~C~~Cg~~ 74 (92)
T 2kwq_A 48 FFKCP-CGNRTISLDRLPKKHCSTCGLF 74 (92)
T ss_dssp EEECT-TSCEEEESSSSCCSCCTTTCSC
T ss_pred EEECC-CCCceeEeeeCCCCCCCCCCCC
Confidence 57786 76554 3445566788888865
No 139
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.66 E-value=1.1 Score=20.15 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2en8_A 11 KSHTCDECGKNFCY 24 (46)
T ss_dssp SSEECTTTCCEESS
T ss_pred CCeECCCcCcccCC
Confidence 45899999998864
No 140
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=78.34 E-value=1.1 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|.-
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el6_A 11 NPYKCSQCEKSFSG 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCeECCCCCcccCC
Confidence 45999999998864
No 141
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=78.32 E-value=0.99 Score=26.65 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=13.5
Q ss_pred CeeEcCCCCCcEEEEE
Q 035461 25 DVIQCRECGYRILYKK 40 (51)
Q Consensus 25 ~~irC~~CG~RIlyK~ 40 (51)
..|+|+.|+++||-+.
T Consensus 11 ~~i~C~~C~s~il~~~ 26 (115)
T 1hxr_A 11 KAVLCQRCGSRVLQPG 26 (115)
T ss_dssp SCEEETTTCCEEECTT
T ss_pred CeEECCCCCCEEeccC
Confidence 5799999999998543
No 142
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.11 E-value=1.8 Score=26.31 Aligned_cols=18 Identities=28% Similarity=0.700 Sum_probs=13.0
Q ss_pred cCCCCeeEcCCCCCcEEE
Q 035461 21 LKPGDVIQCRECGYRILY 38 (51)
Q Consensus 21 ~~~~~~irC~~CG~RIly 38 (51)
+..+.+-|||+||+-...
T Consensus 105 L~kg~p~RCpeCG~~fkL 122 (129)
T 2y69_F 105 LHKGEAQRCPSCGTHYKL 122 (129)
T ss_dssp EESSSCEECTTTCCEEEE
T ss_pred EeCCCceeCCCCCeEEEE
Confidence 345678899999985443
No 143
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=78.05 E-value=0.86 Score=25.13 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=17.1
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.+=-|.+|...+ +.-.||+||+.
T Consensus 10 ~~~AC~~C~~~~-----~~~~CPnC~s~ 32 (69)
T 1ryq_A 10 SEKACRHCHYIT-----SEDRCPVCGSR 32 (69)
T ss_dssp -CEEETTTCBEE-----SSSSCTTTCCC
T ss_pred hhhhHHhCCccc-----cCCcCCCccCC
Confidence 344699999966 45689999975
No 144
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=77.89 E-value=1.3 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 34999999998864
No 145
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=77.85 E-value=2.1 Score=28.38 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=20.7
Q ss_pred eEEEcCCCCCeeecC-------CCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLK-------PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~~~irC~~CG~R 35 (51)
....|..|+.....+ ....-+|+.||..
T Consensus 138 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 172 (285)
T 3glr_A 138 ASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172 (285)
T ss_dssp EEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTCCB
T ss_pred CeEEECCCCCcCCHHHHHHHhhcCCCCCCCCCCCc
Confidence 356899999987753 2345689999974
No 146
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.67 E-value=1.2 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=20.9
Q ss_pred EEEcCCCCCee-ecC----------CCCeeEcCCCCCcE
Q 035461 9 SYICGDCGMEN-TLK----------PGDVIQCRECGYRI 36 (51)
Q Consensus 9 ~Y~C~~Cg~~~-~~~----------~~~~irC~~CG~RI 36 (51)
.|.|..||+.| ... ...+..|..||...
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F 72 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQL 72 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCC
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCee
Confidence 59999999999 432 23467899999753
No 147
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=77.61 E-value=2 Score=29.33 Aligned_cols=29 Identities=24% Similarity=0.580 Sum_probs=20.0
Q ss_pred eEEEcCCCCCeeecC-------C---CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK-------P---GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~---~~~irC~~CG~RI 36 (51)
....|..||...... . ...-+||.||..+
T Consensus 143 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg~l 181 (361)
T 1q14_A 143 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELV 181 (361)
T ss_dssp EEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCCBE
T ss_pred cccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCCEe
Confidence 456799999876642 1 1236999999854
No 148
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.47 E-value=1.3 Score=19.84 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ep2_A 11 KPYECSICGKSFTK 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCcCCCCCCcccCC
Confidence 45899999998874
No 149
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=77.44 E-value=1.6 Score=28.24 Aligned_cols=24 Identities=33% Similarity=0.677 Sum_probs=18.8
Q ss_pred cCCCCCeeecC-CCCeeEcCCCCCc
Q 035461 12 CGDCGMENTLK-PGDVIQCRECGYR 35 (51)
Q Consensus 12 C~~Cg~~~~~~-~~~~irC~~CG~R 35 (51)
|+.||...... .+....|+.||..
T Consensus 110 C~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 110 CGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp CTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cccCCCcCccCCCceeeeCCCCCCE
Confidence 89999988665 3456899999864
No 150
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=77.42 E-value=2.8 Score=23.82 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=23.8
Q ss_pred eEEEcCCCCCeeecC--CCCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--PGDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--~~~~irC~~CG~RI 36 (51)
|.=+|.+|+.+..+- +...|.|..||.-+
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTIL 63 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEE
Confidence 788999999988764 56789999999643
No 151
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=77.37 E-value=1.6 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=6.5
Q ss_pred EEEcCCCCCeeec
Q 035461 9 SYICGDCGMENTL 21 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~ 21 (51)
.|.|.+||..+..
T Consensus 9 ~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 9 QVPCEKCGSLVPV 21 (39)
T ss_dssp EEECTTTCCEEEG
T ss_pred CcccccccCcCCc
Confidence 3455555555443
No 152
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=76.98 E-value=0.73 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.647 Sum_probs=18.1
Q ss_pred cCCCCCeeecCC-----CCeeEcCCCCCcE
Q 035461 12 CGDCGMENTLKP-----GDVIQCRECGYRI 36 (51)
Q Consensus 12 C~~Cg~~~~~~~-----~~~irC~~CG~RI 36 (51)
|.+||.-+.++. ...+.|+.|||..
T Consensus 7 Cp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 7 CRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred ccccCccCcccccCcCCCCEEECCcCCCee
Confidence 888888877652 2458899998854
No 153
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=76.67 E-value=1.2 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=15.7
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.-.|.+||.-.- .-.||+||..
T Consensus 6 mr~C~~CgvYTL-----k~~CP~CG~~ 27 (60)
T 2apo_B 6 MKKCPKCGLYTL-----KEICPKCGEK 27 (60)
T ss_dssp CEECTTTCCEES-----SSBCSSSCSB
T ss_pred ceeCCCCCCEec-----cccCcCCCCc
Confidence 357999987654 3459999965
No 154
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.55 E-value=0.7 Score=20.93 Aligned_cols=14 Identities=36% Similarity=0.776 Sum_probs=10.9
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2elz_A 11 KPYKCEDCGKGYNR 24 (46)
T ss_dssp SSCBCSSSCCBCSS
T ss_pred CCeeCcccCchhCC
Confidence 34889999988764
No 155
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=76.49 E-value=2.4 Score=21.54 Aligned_cols=9 Identities=56% Similarity=1.420 Sum_probs=5.0
Q ss_pred eEcCCCCCc
Q 035461 27 IQCRECGYR 35 (51)
Q Consensus 27 irC~~CG~R 35 (51)
..|.+|||+
T Consensus 38 y~C~~Cg~~ 46 (50)
T 1tfi_A 38 VVCNECGNR 46 (50)
T ss_dssp EEESSSCCE
T ss_pred EEcCCCCCe
Confidence 455556654
No 156
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.23 E-value=0.95 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.656 Sum_probs=11.6
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2en6_A 10 EKPYGCNECGKTFSQ 24 (46)
T ss_dssp SCCEEETTTTEEESS
T ss_pred CcCeECCCCCcccCc
Confidence 345899999988864
No 157
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=76.13 E-value=2.6 Score=22.13 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=6.2
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..||..|.
T Consensus 67 ~~C~~C~~~f~ 77 (119)
T 2jp9_A 67 FQCKTCQRKFS 77 (119)
T ss_dssp EECTTTCCEES
T ss_pred ccCCccCchhC
Confidence 55555555554
No 158
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=75.78 E-value=1.5 Score=21.66 Aligned_cols=11 Identities=27% Similarity=0.915 Sum_probs=5.8
Q ss_pred EEcCC--CCCeee
Q 035461 10 YICGD--CGMENT 20 (51)
Q Consensus 10 Y~C~~--Cg~~~~ 20 (51)
|.|.. ||+.|.
T Consensus 39 ~~C~~~~C~k~f~ 51 (79)
T 2dlk_A 39 FSCPEPACGKSFN 51 (79)
T ss_dssp EECSCTTTCCEES
T ss_pred eECCCCCCcCccC
Confidence 55555 555544
No 159
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=75.77 E-value=0.74 Score=20.70 Aligned_cols=14 Identities=43% Similarity=0.871 Sum_probs=10.9
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eov_A 11 KPYKCSDCGKSFTW 24 (46)
T ss_dssp CSCBCSSSCCBCSS
T ss_pred CCccCCccChhhCC
Confidence 34889999988764
No 160
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.48 E-value=1.6 Score=18.46 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2els_A 8 KIFTCEYCNKVFKF 21 (36)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCEECCCCCceeCC
Confidence 46999999998853
No 161
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=75.32 E-value=1.6 Score=29.37 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=19.7
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
-...|+-||.+-.... ++||+||..
T Consensus 207 R~l~Cs~C~t~W~~~R---~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHYVR---IKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEECCT---TSCSSSCCC
T ss_pred EEEEeCCCCCEEeecC---cCCcCCCCC
Confidence 3567999999887764 789999964
No 162
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.14 E-value=1.6 Score=18.31 Aligned_cols=14 Identities=21% Similarity=0.743 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 45999999998864
No 163
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=75.08 E-value=2.9 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.8
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
...-|..|++.+.....+.-+|+.||.-
T Consensus 41 ~Y~ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 41 YYYRCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp EEEECTTSCCCEEEETTTEEEETTTTEE
T ss_pred EehhchhhCCEeeeCCCCeEECCCCCCC
Confidence 5667999999997556678999999964
No 164
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=75.05 E-value=2.5 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.745 Sum_probs=16.8
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-.|.-|+..+- .+++|..|+..+
T Consensus 15 t~C~~C~~~l~----qG~~C~~C~~~~ 37 (52)
T 1faq_A 15 AFCDICQKFLL----NGFRCQTCGYKF 37 (52)
T ss_dssp EECTTSSSEEC----SEEECTTTTCCB
T ss_pred cCCCCcccccc----cCCEeCCCCCeE
Confidence 35888887653 678999888653
No 165
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=74.83 E-value=2.6 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=18.1
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+---...+.+|..|+..+
T Consensus 25 ~C~~C~~~l~Gl~~qg~~C~~C~~~~ 50 (65)
T 2enz_A 25 FCEHCGTLLWGLARQGLKCDACGMNV 50 (65)
T ss_dssp BCSSSCCBCCCSSSCSEEESSSCCEE
T ss_pred CchhcChhheecCCcccccCCCCCcc
Confidence 48888877643344778999998653
No 166
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=74.74 E-value=1.5 Score=26.33 Aligned_cols=24 Identities=29% Similarity=0.726 Sum_probs=18.6
Q ss_pred cCCCCCeeecCCC-----CeeEcCCCCCc
Q 035461 12 CGDCGMENTLKPG-----DVIQCRECGYR 35 (51)
Q Consensus 12 C~~Cg~~~~~~~~-----~~irC~~CG~R 35 (51)
|.+||.-.-++.+ -...|+.|||.
T Consensus 27 CPeCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 27 CRDCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CTTTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred CCCCCCEeeECccCCCceeEEECCCCCCc
Confidence 8999998877643 24899999984
No 167
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.70 E-value=1.7 Score=18.34 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|.-
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 8 LLYDCHICERKFKN 21 (36)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 45999999998864
No 168
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=74.64 E-value=1.1 Score=20.17 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 11 KPFKCVECGKGFSRR 25 (46)
T ss_dssp CSBCCSSSCCCBSST
T ss_pred CCcccCccCcccCCH
Confidence 458899999888753
No 169
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=74.43 E-value=3 Score=28.51 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=21.6
Q ss_pred ceEEEcCCCCCeeecC--CCCeeEcCCCCCcEE
Q 035461 7 PVSYICGDCGMENTLK--PGDVIQCRECGYRIL 37 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~--~~~~irC~~CG~RIl 37 (51)
...|.|..||.-.... +..+-.|++||.+..
T Consensus 242 g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~ 274 (392)
T 3axs_A 242 GYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFH 274 (392)
T ss_dssp EEEEECTTTCCEEEECCGGGCCSBCTTTCSBCE
T ss_pred ceEEECCCCCCeEeecCCCCCCCcCCCCCCccc
Confidence 4678999999754322 124578999998754
No 170
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=74.37 E-value=0.67 Score=18.63 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=9.3
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 788889887753
No 171
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.25 E-value=1.7 Score=18.45 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=11.7
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 8 k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 8 RAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCEECSSSSCEECSS
T ss_pred CCeECCCCChhhccC
Confidence 459999999988643
No 172
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=73.87 E-value=0.83 Score=18.10 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=9.1
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 788888887753
No 173
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=73.78 E-value=1.3 Score=29.71 Aligned_cols=27 Identities=19% Similarity=0.532 Sum_probs=17.7
Q ss_pred eEEEcCCCCC---eeec-CCCCeeEcCCCCC
Q 035461 8 VSYICGDCGM---ENTL-KPGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~---~~~~-~~~~~irC~~CG~ 34 (51)
+.++|.+||. .+-. .....+-|.+||.
T Consensus 20 ~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp --CCCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCcCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 5678999996 2212 2457799999984
No 174
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.73 E-value=1.8 Score=18.26 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 45999999998864
No 175
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=73.53 E-value=1.8 Score=18.70 Aligned_cols=13 Identities=38% Similarity=0.608 Sum_probs=10.9
Q ss_pred EEEcCCCCCeeec
Q 035461 9 SYICGDCGMENTL 21 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~ 21 (51)
.|.|..||+.|..
T Consensus 6 ~~~C~~C~k~f~~ 18 (39)
T 1njq_A 6 SYTCSFCKREFRS 18 (39)
T ss_dssp SEECTTTCCEESS
T ss_pred ceECCCCCcccCC
Confidence 4999999998864
No 176
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=73.46 E-value=0.76 Score=18.07 Aligned_cols=13 Identities=15% Similarity=0.296 Sum_probs=9.6
Q ss_pred EEcCCCCCeeecC
Q 035461 10 YICGDCGMENTLK 22 (51)
Q Consensus 10 Y~C~~Cg~~~~~~ 22 (51)
|.|..||..|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 7788888877543
No 177
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=73.42 E-value=1.9 Score=18.79 Aligned_cols=14 Identities=43% Similarity=1.063 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 10 ~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 10 TPYLCGQCGKSFTQ 23 (42)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 45999999999864
No 178
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=73.26 E-value=3.3 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.626 Sum_probs=18.1
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+---...+.+|..|+..+
T Consensus 22 ~C~~C~~~l~Gl~~qg~~C~~C~~~~ 47 (65)
T 3uej_A 22 FCDHCGSLLWGLVKQGLKCEDCGMNV 47 (65)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred cccccChhhhccCceeeECCCCCCeE
Confidence 48888886532234789999998653
No 179
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=73.24 E-value=0.76 Score=18.22 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.3
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 788888887754
No 180
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=73.17 E-value=2.9 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=22.8
Q ss_pred eEEEcCCCCCeeecC--CCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLK--PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--~~~~irC~~CG~R 35 (51)
|.=+|.+|+.+..+- +...|.|..||.-
T Consensus 35 m~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 667999999988764 4578999999863
No 181
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=73.03 E-value=0.89 Score=20.42 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.0
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eop_A 11 KPHECRECGKSFSF 24 (46)
T ss_dssp CSCBCTTTCCBCSS
T ss_pred CCeeCCCCCchhCC
Confidence 45889999988764
No 182
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=72.81 E-value=2.2 Score=23.96 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=9.7
Q ss_pred eeEcCCCCCcEEEE
Q 035461 26 VIQCRECGYRILYK 39 (51)
Q Consensus 26 ~irC~~CG~RIlyK 39 (51)
.+.||.||.-.|..
T Consensus 2 ~M~Cp~Cg~~~~~~ 15 (133)
T 3o9x_A 2 HMKCPVCHQGEMVS 15 (133)
T ss_dssp CCBCTTTSSSBEEE
T ss_pred CcCCCcCCCCceee
Confidence 36799998775533
No 183
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.76 E-value=0.68 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytr_A 11 KPYKCNECGKAFSQ 24 (46)
T ss_dssp CTTCCTTTCCCCSS
T ss_pred cCcCCCCCCCccCC
Confidence 34889999988764
No 184
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=75.05 E-value=0.74 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=10.6
Q ss_pred EEEcCCCCCeeecC
Q 035461 9 SYICGDCGMENTLK 22 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~ 22 (51)
.|.|..||+.|...
T Consensus 2 ~~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 2 PCQCVMCGKAFTQA 15 (29)
Confidence 38899999887644
No 185
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=72.59 E-value=2.8 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=19.3
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~ 34 (51)
-.|-.|+....+.. .+.+.|+.||.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGL 34 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 36889998888764 47799999973
No 186
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.59 E-value=0.81 Score=20.56 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.0
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 11 KLYNCKECGKSFSR 24 (46)
T ss_dssp CCCCBTTTTBCCSC
T ss_pred CCeECCCCCCccCc
Confidence 45889999988764
No 187
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=72.41 E-value=2.8 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=19.7
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~ 34 (51)
-.|-.|+...++.. ...+.|+.||.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRL 34 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCc
Confidence 46889998888764 46799999973
No 188
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=74.70 E-value=0.77 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=10.8
Q ss_pred EEEcCCCCCeeecC
Q 035461 9 SYICGDCGMENTLK 22 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~ 22 (51)
.|.|..||+.|.-.
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 48899999887644
No 189
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=72.12 E-value=4 Score=19.99 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=6.2
Q ss_pred EEc--CCCCCeee
Q 035461 10 YIC--GDCGMENT 20 (51)
Q Consensus 10 Y~C--~~Cg~~~~ 20 (51)
|.| ..||+.+.
T Consensus 2 ~~C~~~~C~~~f~ 14 (85)
T 2j7j_A 2 YVCHFENCGKAFK 14 (85)
T ss_dssp EECCSTTCCCEES
T ss_pred ccCCCCCCCcccC
Confidence 555 55665554
No 190
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=71.86 E-value=4.3 Score=21.66 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-.|..|+..+---...+++|..|++.+
T Consensus 35 t~C~~C~~~lwGl~kqG~~C~~C~~~~ 61 (77)
T 2enn_A 35 TFCSVCHEFVWGLNKQGYQCRQCNAAI 61 (77)
T ss_dssp EECSSSCCEECCTTCCEEECSSSCCEE
T ss_pred cCccccChhhccccccccCcCCCCCcC
Confidence 358888887653345789999998754
No 191
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.56 E-value=1.1 Score=20.22 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred cCeECCCCCCeeCC
Confidence 34889999988764
No 192
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=71.45 E-value=3.4 Score=22.96 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=21.1
Q ss_pred eEEEcCCCCCeeecC--------------C-CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--------------P-GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--------------~-~~~irC~~CG~RI 36 (51)
-.|.|..||+.|... . ..+..|..||...
T Consensus 17 kpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F 60 (102)
T 2ghf_A 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60 (102)
T ss_dssp SSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEE
T ss_pred cCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCccc
Confidence 569999999998631 1 2358899999654
No 193
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=71.39 E-value=1.5 Score=23.83 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=19.3
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
....-+|..|++.+.+. +.+| .||.-.
T Consensus 12 ~~~~~rC~~C~kkvgl~---~f~C-rCg~~F 38 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVM---GFKC-KCGSTF 38 (64)
T ss_dssp SCCSCSCTTTCCCCTTS---CEEC-TTSCEE
T ss_pred CCcCCcChhhCCccccc---CeEe-ecCCEe
Confidence 33456899999887664 5888 788643
No 194
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=71.30 E-value=2.7 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=19.2
Q ss_pred eEEEcCCCCCeeecCC-----------CCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKP-----------GDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~-----------~~~irC~~CG~R 35 (51)
....|..|+....... ...-+|| ||..
T Consensus 153 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~ 190 (290)
T 3u31_A 153 FEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI 190 (290)
T ss_dssp EEEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB
T ss_pred CcceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE
Confidence 3568999999876532 1246899 9975
No 195
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.14 E-value=2.2 Score=18.98 Aligned_cols=14 Identities=29% Similarity=0.731 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 11 KPYECNECGKAFIW 24 (44)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCcccCc
Confidence 45999999999864
No 196
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=71.11 E-value=6.9 Score=23.00 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=16.6
Q ss_pred cCCCCCeeecCC-----CCeeEcCCCC
Q 035461 12 CGDCGMENTLKP-----GDVIQCRECG 33 (51)
Q Consensus 12 C~~Cg~~~~~~~-----~~~irC~~CG 33 (51)
|..||....... ...-.|+.||
T Consensus 6 C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 6 CSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred CchhCCccccccccCCCCcceECCCCC
Confidence 899999987642 2356799998
No 197
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.09 E-value=2.3 Score=18.57 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2en2_A 10 KPYKCETCGARFVQ 23 (42)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCEeCCCcChhhCC
Confidence 45999999998864
No 198
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.07 E-value=3.8 Score=22.12 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=16.8
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|..|+..+---...+++|..|++.
T Consensus 30 ~C~~C~~~lwGl~kqg~~C~~C~~~ 54 (83)
T 2yuu_A 30 FCSVCKDFVWGLNKQGYKCRQCNAA 54 (83)
T ss_dssp CCSSSCCCCCSSSCCEEEETTTCCE
T ss_pred ChhhcChhhccccccccccCCcCCe
Confidence 3778877653223467888888765
No 199
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=71.06 E-value=2.8 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=19.8
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~ 34 (51)
-.|-.|+...++.. .+.+.|+.||.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRL 34 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 47899998887764 57799999973
No 200
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=70.97 E-value=2.8 Score=22.57 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=19.4
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~ 34 (51)
-.|-.|+...++.. .+.+.|+.||.
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKL 34 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 46889988887764 57799999973
No 201
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=70.83 E-value=1 Score=20.35 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emk_A 11 KPYECKECGKAFSQ 24 (46)
T ss_dssp CSCBCSSSCCBCSC
T ss_pred CceECCCCCchhCC
Confidence 34889999988764
No 202
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.52 E-value=0.89 Score=20.41 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~F~~ 24 (46)
T 2eoe_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSEETTTTEECSS
T ss_pred CCeECCCcChhhCC
Confidence 44889999988764
No 203
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=70.43 E-value=3.2 Score=21.50 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=17.6
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+---...+++|..|++.+
T Consensus 26 ~C~~C~~~l~Gl~~qg~~C~~C~~~~ 51 (66)
T 1y8f_A 26 YCYECEGLLWGIARQGMRCTECGVKC 51 (66)
T ss_dssp CCTTTCCCCCSSCCEEEEETTTCCEE
T ss_pred ChhhcChhhcccCcceeEcCCCCCee
Confidence 47788777632234778999998653
No 204
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=70.30 E-value=1.1 Score=18.99 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=11.0
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 10 KPFQCPDCDRSFSR 23 (37)
T ss_dssp SSBCCTTTCCCBSS
T ss_pred CCccCCCCCcccCc
Confidence 45899999988753
No 205
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.21 E-value=0.96 Score=20.37 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 11 KPFKCDICGKSFCG 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCcCCchhCC
Confidence 45889999988764
No 206
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=70.19 E-value=3.6 Score=21.90 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=5.6
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
|.|..||..|.
T Consensus 35 ~~C~~C~~~f~ 45 (124)
T 1ubd_C 35 HVCAECGKAFV 45 (124)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCchhC
Confidence 55555555543
No 207
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=70.16 E-value=1.1 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEcCCCCCeeecC--------CC----CeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--------PG----DVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--------~~----~~irC~~CG~RI 36 (51)
+.-.|..||...... .+ ....|++||||-
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ 259 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRT 259 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcc
Confidence 667899998765432 11 568999999985
No 208
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.95 E-value=4.1 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=17.1
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+---...+++|..|++.+
T Consensus 30 ~C~~C~~~l~Gl~kqG~~C~~C~~~~ 55 (85)
T 2eli_A 30 FCDHCGSLLYGLIHQGMKCDTCDMNV 55 (85)
T ss_dssp BCSSSCCBCCCSSSCEEECSSSCCEE
T ss_pred CCcccCccccccccCCCcCCCcCCcc
Confidence 47778776533234778888887653
No 209
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.85 E-value=1.4 Score=19.74 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2epz_A 11 KPFDCIDCGKAFSD 24 (46)
T ss_dssp CSBCCTTTCCCBSS
T ss_pred CCeECCCCCceeCC
Confidence 45899999998874
No 210
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.84 E-value=2.4 Score=18.72 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.2
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQR 25 (44)
T ss_dssp CSEECSSSSCEESSS
T ss_pred CCeECCCCCchhCCH
Confidence 459999999998754
No 211
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=69.74 E-value=1.4 Score=21.04 Aligned_cols=27 Identities=30% Similarity=0.717 Sum_probs=16.9
Q ss_pred EcCCCCCeeec---C-CCCeeEcCCCCCcEE
Q 035461 11 ICGDCGMENTL---K-PGDVIQCRECGYRIL 37 (51)
Q Consensus 11 ~C~~Cg~~~~~---~-~~~~irC~~CG~RIl 37 (51)
.|.+||.+... + ..-.++|..||++--
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCccc
Confidence 47888765432 2 224588999997643
No 212
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=69.50 E-value=4.7 Score=20.06 Aligned_cols=27 Identities=26% Similarity=0.660 Sum_probs=14.4
Q ss_pred EEEcC--CCCCeeecC-----------CCCeeEcCCCCCc
Q 035461 9 SYICG--DCGMENTLK-----------PGDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~--~Cg~~~~~~-----------~~~~irC~~CG~R 35 (51)
.|.|. .||..+... ...+..|+.||..
T Consensus 35 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~ 74 (89)
T 2wbs_A 35 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA 74 (89)
T ss_dssp CEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred CcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence 36664 566666431 1234666666653
No 213
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=69.47 E-value=2.5 Score=19.58 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 6 kp~~C~~C~k~F~~ 19 (48)
T 3iuf_A 6 KPYACDICGKRYKN 19 (48)
T ss_dssp SCEECTTTCCEESS
T ss_pred cCEECCCcCcccCC
Confidence 35999999998864
No 214
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.43 E-value=2.6 Score=18.31 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (41)
T 2ept_A 9 RVYECQECGKSFRQ 22 (41)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCCcCC
Confidence 45999999999864
No 215
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=69.08 E-value=2.7 Score=18.30 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2el5_A 9 NPYECSECGKAFNR 22 (42)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCccCCCcChhhCC
Confidence 45999999999864
No 216
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.07 E-value=1.2 Score=18.70 Aligned_cols=14 Identities=21% Similarity=0.520 Sum_probs=10.9
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|.-
T Consensus 8 ~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 8 KTHLCDMCGKKFKS 21 (36)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCeecCcCCCCcCc
Confidence 45899999988753
No 217
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=69.06 E-value=2.9 Score=22.42 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=15.7
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
-.|..||.-.- .-.||.||...
T Consensus 6 r~C~~Cg~YTL-----k~~CP~CG~~t 27 (60)
T 2aus_D 6 RKCPKCGRYTL-----KETCPVCGEKT 27 (60)
T ss_dssp EECTTTCCEES-----SSBCTTTCSBC
T ss_pred eECCCCCCEEc-----cccCcCCCCcc
Confidence 57999987653 24599999754
No 218
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.03 E-value=2.6 Score=18.59 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2emb_A 11 KRYECSKCQATFNL 24 (44)
T ss_dssp SSEECTTTCCEESC
T ss_pred CCeECCCCCCccCC
Confidence 45999999999864
No 219
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=68.85 E-value=2.1 Score=24.92 Aligned_cols=27 Identities=30% Similarity=0.748 Sum_probs=20.3
Q ss_pred EEcCCCCCeeecCCCC--eeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKPGD--VIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~--~irC~~CG~RI 36 (51)
-+|.-||.++.+..+. -+-|.+|++.|
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv 45 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPA 45 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChh
Confidence 5899999998887543 27788888754
No 220
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.50 E-value=2.7 Score=18.77 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=12.2
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2ytp_A 10 ERHYECSECGKAFAR 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCcCCcccCC
Confidence 345999999999874
No 221
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.20 E-value=2.8 Score=18.67 Aligned_cols=15 Identities=27% Similarity=0.632 Sum_probs=12.2
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~~~~~C~~C~k~F~~ 24 (46)
T 2emi_A 10 ERHYECSECGKAFIQ 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCCCCCCCCcccCC
Confidence 345999999999874
No 222
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=68.15 E-value=2.2 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=16.2
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.+..=.|..||... ..---|++||+
T Consensus 27 ~p~l~~c~~cG~~~----~pH~vc~~CG~ 51 (60)
T 2zjr_Z 27 APNLTECPQCHGKK----LSHHICPNCGY 51 (60)
T ss_dssp CCCCEECTTTCCEE----CTTBCCTTTCB
T ss_pred CCCceECCCCCCEe----CCceEcCCCCc
Confidence 34455788888773 23367888883
No 223
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=68.05 E-value=3.7 Score=25.24 Aligned_cols=25 Identities=16% Similarity=0.432 Sum_probs=18.5
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
...-+|+.|+++..+.. .|++||..
T Consensus 56 ~~~vlCg~C~~~q~~~~----~C~~Cg~~ 80 (143)
T 2dkt_A 56 VKEVQCINCEKLQHAQQ----TCEDCSTL 80 (143)
T ss_dssp CCCEEESSSCCEECSCS----BCSSSCCB
T ss_pred cceeeecccCccccccC----cCCCCCcc
Confidence 35678999999987652 78888853
No 224
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.99 E-value=0.98 Score=20.48 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=10.7
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 11 KPYKCMECGKAFGD 24 (46)
T ss_dssp CSSSBTTTTBCCSS
T ss_pred CCcCCCCCCchhCC
Confidence 45889999888764
No 225
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=67.97 E-value=5.5 Score=24.27 Aligned_cols=28 Identities=14% Similarity=0.431 Sum_probs=22.4
Q ss_pred ceEEEcCC--CCCeeecCCCCeeEcCCCCC
Q 035461 7 PVSYICGD--CGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~--Cg~~~~~~~~~~irC~~CG~ 34 (51)
....-|.. |++.+.....+.-+|+.|+.
T Consensus 41 ~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~ 70 (181)
T 1l1o_C 41 CMYQACPTQDCNKKVIDQQNGLYRCEKCDT 70 (181)
T ss_dssp TEEEBCCSTTCCCBCEEETTTEEEETTTTE
T ss_pred EEECCCCchhcCCccccCCCCeEECCCCCC
Confidence 46678999 99998765566789999984
No 226
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.71 E-value=2.9 Score=18.29 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2eof_A 11 KPYECNECQKAFNT 24 (44)
T ss_dssp CSEECTTTCCEESC
T ss_pred CCeECCCCCcccCC
Confidence 45999999999864
No 227
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=67.60 E-value=2.7 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=18.8
Q ss_pred eEEEcCCCCCe---eec-CCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGME---NTL-KPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~---~~~-~~~~~irC~~CG~R 35 (51)
...+|.+||.. +.. .....+-|.+||.=
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 44579999872 222 24577999999963
No 228
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=67.57 E-value=3.8 Score=25.91 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=13.5
Q ss_pred eEEEcCCCCCeeecCC----CCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKP----GDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~----~~~irC~~CG~R 35 (51)
....|.+|+.....+. ...-+|+.||..
T Consensus 112 ~~~~C~~C~~~~~~~~~~~~~~~p~c~~Cgg~ 143 (235)
T 1s5p_A 112 LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAP 143 (235)
T ss_dssp EEEEETTTCCEEECCSCCCSSCCC-------C
T ss_pred eEEEeCCCCCcccchhhccCCCCCCCCCCCCe
Confidence 4567999999776542 234578889874
No 229
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=67.47 E-value=4 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=19.9
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+.--...+.+|..||..+
T Consensus 359 ~C~~C~~~~~g~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 359 SCKACQMLLRGTFYQGYRCYRCRAPA 384 (406)
T ss_dssp BCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCccccchhceeCCCCCCCCCCcCcc
Confidence 58999988854455789999998653
No 230
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.24 E-value=3 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em4_A 11 RPYECIECGKAFKT 24 (46)
T ss_dssp SSEECSSSCCEESS
T ss_pred cCcCCCCCCCccCC
Confidence 45999999999874
No 231
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.18 E-value=3.1 Score=18.47 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.7
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eow_A 11 KPYKCNECGKAFRA 24 (46)
T ss_dssp CCEECTTSCCEESS
T ss_pred CCeeccccCChhcC
Confidence 45999999999864
No 232
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.07 E-value=3.1 Score=18.54 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=12.1
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2en3_A 11 KPFQCKECGMNFSWS 25 (46)
T ss_dssp CSEECSSSCCEESSS
T ss_pred CCeeCcccChhhCCH
Confidence 459999999998753
No 233
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=66.76 E-value=6 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.490 Sum_probs=17.0
Q ss_pred EEcCCCCCeeecC----------CCCeeEcCCCCCcEEEE
Q 035461 10 YICGDCGMENTLK----------PGDVIQCRECGYRILYK 39 (51)
Q Consensus 10 Y~C~~Cg~~~~~~----------~~~~irC~~CG~RIlyK 39 (51)
+.|..|+..+... ....+.|++|+..+..+
T Consensus 111 v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~ 150 (170)
T 3hcs_A 111 MDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFE 150 (170)
T ss_dssp EECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGG
T ss_pred eECCCCChHHHHHHHHHHhhhhCCCCCeECCCCCCccCHH
Confidence 4566666665432 23456677776665543
No 234
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.71 E-value=3.1 Score=18.42 Aligned_cols=15 Identities=33% Similarity=0.822 Sum_probs=12.1
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQ 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCCCCCccCC
Confidence 345999999999874
No 235
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=66.67 E-value=3.2 Score=18.49 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=12.2
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ema_A 10 EKRYKCNECGKVFSR 24 (46)
T ss_dssp SCCEECSSSCCEESS
T ss_pred CcCcCCCCCcchhCC
Confidence 345999999999874
No 236
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.65 E-value=3.2 Score=18.42 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=12.1
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yts_A 10 EKPYICNECGKSFIQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCEECCCCChhhCC
Confidence 345999999999874
No 237
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=66.62 E-value=4.5 Score=21.09 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=16.3
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|.-||..+.+- ..+.+|.+|+..
T Consensus 21 ~C~~Cg~~i~~g-kq~~kC~dC~~~ 44 (61)
T 4b6d_A 21 SCVPCGKRIKFG-KLSLKCRDCRVV 44 (61)
T ss_dssp ECTTTCCEECTT-CEEEEESSSSCE
T ss_pred ccccccCEEEEe-eEeeECCCCCCe
Confidence 578888876432 266888888743
No 238
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.61 E-value=3.2 Score=18.48 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 11 KPYRCAECGKAFTD 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45999999999874
No 239
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=66.36 E-value=1.4 Score=18.72 Aligned_cols=12 Identities=17% Similarity=0.553 Sum_probs=9.4
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 788899888753
No 240
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.27 E-value=3.2 Score=18.51 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=12.1
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yto_A 10 EKPYKCSDCGKAFTR 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCEECcccCCccCC
Confidence 345999999999864
No 241
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.16 E-value=3.2 Score=18.38 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2eor_A 11 KPYNCEECGKAFIH 24 (46)
T ss_dssp CSEECTTTCCEESS
T ss_pred cCccCCCCCCCcCC
Confidence 45999999999864
No 242
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.80 E-value=3.4 Score=18.39 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.7
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~F~~ 24 (46)
T 2em3_A 11 KPYECKVCSKAFTQ 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCCcccCC
Confidence 45999999999874
No 243
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=65.66 E-value=3.3 Score=18.50 Aligned_cols=14 Identities=21% Similarity=0.807 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emj_A 11 KPFECAECGKSFSI 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCEECCCCCcccCC
Confidence 45999999999864
No 244
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.54 E-value=4.1 Score=22.03 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=11.8
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|+-|...+. ..++|+.|++++
T Consensus 17 ~C~IC~~~i~----~g~~C~~C~h~f 38 (74)
T 2ct0_A 17 ICNICHSLLI----QGQSCETCGIRM 38 (74)
T ss_dssp BCSSSCCBCS----SSEECSSSCCEE
T ss_pred cCcchhhHcc----cCCccCCCCchh
Confidence 4555555543 235666666553
No 245
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=65.53 E-value=4 Score=21.71 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=9.8
Q ss_pred eeEcCCCCCcEEEEE
Q 035461 26 VIQCRECGYRILYKK 40 (51)
Q Consensus 26 ~irC~~CG~RIlyK~ 40 (51)
.++||.||.--|...
T Consensus 2 ~m~Cp~Cg~~~l~~~ 16 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSG 16 (78)
T ss_dssp -CBCTTTSSSBEEEE
T ss_pred ceECCCCCCCeeEeE
Confidence 368999997645433
No 246
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.47 E-value=3.4 Score=18.37 Aligned_cols=14 Identities=43% Similarity=0.710 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|.-
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2emh_A 11 RPYICTVCGKAFTD 24 (46)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCcCCCCCCchhCC
Confidence 45999999999875
No 247
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=65.33 E-value=1.5 Score=31.97 Aligned_cols=27 Identities=26% Similarity=0.614 Sum_probs=2.7
Q ss_pred EEEcCCCCCeeecCCC-CeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKPG-DVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~-~~irC~~CG~R 35 (51)
.=+|.+||..-++... ..-.||.||..
T Consensus 540 ~~~C~~CGy~~~~~~~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 540 VDKCFTCGSTHEMTPTENGFVCSICGET 567 (605)
T ss_dssp EEET------------------------
T ss_pred CccCcccCCcCccCccccCCcCCCCCCC
Confidence 4579999987654422 23679999974
No 248
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=65.18 E-value=2.9 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.557 Sum_probs=19.6
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
+....+|..|++.+.+. +.+| .||.-
T Consensus 22 k~~~~RC~~C~kkvgL~---~f~C-rCg~~ 47 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVT---GFKC-RCGST 47 (74)
T ss_dssp TCCCCBCSSSCCBCTTT---CEEC-TTSCE
T ss_pred cccCccchhhcCccccc---ceEe-ccCCE
Confidence 33567899999887775 5889 68864
No 249
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.10 E-value=3.5 Score=18.24 Aligned_cols=14 Identities=14% Similarity=0.498 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytf_A 11 KPFECSECQKAFNT 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCcCCCCCCcccCC
Confidence 45999999999864
No 250
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.09 E-value=2 Score=18.12 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=9.1
Q ss_pred eEEEcCCCCCeee
Q 035461 8 VSYICGDCGMENT 20 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~ 20 (51)
..|.|..||+.|.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elo_A 8 RSYSCPVCEKSFS 20 (37)
T ss_dssp CCCEETTTTEECS
T ss_pred CCcCCCCCCCccC
Confidence 3477888887764
No 251
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.08 E-value=3.5 Score=18.38 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=12.2
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~f~~~ 25 (46)
T 2eoy_A 11 KCFKCNKCEKTFSCS 25 (46)
T ss_dssp CCEECSSSCCEESSS
T ss_pred CCEECcCCCCcCCCH
Confidence 459999999998753
No 252
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.95 E-value=3.6 Score=18.30 Aligned_cols=14 Identities=43% Similarity=1.049 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytj_A 11 KPYICAECGKAFTI 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred cCeECCCCChhhCC
Confidence 45999999999874
No 253
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=64.92 E-value=1.4 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.765 Sum_probs=13.2
Q ss_pred CceEEEcCCCCCeeecC
Q 035461 6 EPVSYICGDCGMENTLK 22 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~ 22 (51)
....|.|..||+.|.-.
T Consensus 5 gekp~~C~~CgK~F~~~ 21 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSP 21 (36)
T ss_dssp SCCCCEETTTTEECSCH
T ss_pred CccCeECCCCCCccCCH
Confidence 34569999999998754
No 254
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=64.89 E-value=3.4 Score=19.27 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 23 k~~~C~~C~k~f~~ 36 (54)
T 1yui_A 23 QPATCPICYAVIRQ 36 (54)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCccCCCCCcccCC
Confidence 45999999998864
No 255
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=64.75 E-value=2.8 Score=16.33 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=9.6
Q ss_pred EEcC--CCCCeeec
Q 035461 10 YICG--DCGMENTL 21 (51)
Q Consensus 10 Y~C~--~Cg~~~~~ 21 (51)
|.|. .||+.|..
T Consensus 3 ~~C~~~~C~k~f~~ 16 (29)
T 2ab3_A 3 YVCHFENCGRSFND 16 (29)
T ss_dssp EEECSTTTCEEESS
T ss_pred CCCcCCcCcCccCC
Confidence 8899 99988753
No 256
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=64.63 E-value=0.86 Score=19.20 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.5
Q ss_pred EEcCCCCCeeec
Q 035461 10 YICGDCGMENTL 21 (51)
Q Consensus 10 Y~C~~Cg~~~~~ 21 (51)
|.|..||+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 788999887764
No 257
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=64.55 E-value=3.5 Score=18.23 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2el4_A 11 KPYGCSQCAKTFSL 24 (46)
T ss_dssp CSEECSSSSCEESS
T ss_pred CceECCCCCchhCC
Confidence 45999999999875
No 258
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=64.35 E-value=11 Score=22.90 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=22.6
Q ss_pred ceEEEcCCCCCeeec--------CCCCeeEcCCCCCcEEEEEe
Q 035461 7 PVSYICGDCGMENTL--------KPGDVIQCRECGYRILYKKR 41 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~--------~~~~~irC~~CG~RIlyK~R 41 (51)
.+.|+|..||.+... +..+.-.||.||...-.-.|
T Consensus 76 r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~ 118 (166)
T 3ir9_A 76 RVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDV 118 (166)
T ss_dssp EEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEE
T ss_pred EEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhH
Confidence 368999999965422 11234579999987544443
No 259
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.31 E-value=3.7 Score=18.30 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=12.3
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emf_A 10 GKHFECTECGKAFTR 24 (46)
T ss_dssp SCCEECSSSCCEESC
T ss_pred CCCeECCCCCchhCC
Confidence 345999999999874
No 260
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=64.24 E-value=1.4 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEcCCCCCeeecCCCCeeEcC--CCCCc
Q 035461 10 YICGDCGMENTLKPGDVIQCR--ECGYR 35 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~--~CG~R 35 (51)
..|-.|+...+... +.+.|+ .||..
T Consensus 11 L~CP~c~~~L~~~~-~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 11 LACPACHAPLEERD-AELICTGQDCGLA 37 (56)
T ss_dssp CCCSSSCSCEEEET-TEEEECSSSCCCE
T ss_pred eeCCCCCCcceecC-CEEEcCCcCCCcE
Confidence 37889988877766 779999 88754
No 261
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.21 E-value=3.7 Score=18.21 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.1
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp SCSEECSSSCCEESS
T ss_pred CCCEeCCcCCCccCC
Confidence 345999999999874
No 262
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=63.92 E-value=5.1 Score=21.17 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=15.9
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCC
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.|..|+..|.+-. ..-.|+.||.
T Consensus 13 ~C~~C~~~F~~~~-RrHHCR~CG~ 35 (73)
T 1vfy_A 13 ACMICSKKFSLLN-RKHHCRSCGG 35 (73)
T ss_dssp BCTTTCCBCBTTB-CCEECTTTCC
T ss_pred cccCCCCccCCcc-ccccCCCCCE
Confidence 6999999998753 3355555553
No 263
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.43 E-value=2.8 Score=18.49 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.2
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 ~~~~C~~C~k~F~~~ 25 (44)
T 2eox_A 11 KSYNCNECGKAFTRI 25 (44)
T ss_dssp CCEEETTTTEEESSS
T ss_pred CCeECcccCcccCCH
Confidence 459999999988754
No 264
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.10 E-value=4 Score=18.09 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2enc_A 11 KPFKCEECGKGFYT 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCcCCCCCCCcCCC
Confidence 45999999999874
No 265
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=62.89 E-value=1.9 Score=31.27 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCC-CcEEEE
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECG-YRILYK 39 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG-~RIlyK 39 (51)
..-.| .||..+.++.+.--.||.|| ..++.+
T Consensus 555 ~~~~c-~cg~~~~~k~g~~G~CP~Cg~g~l~~r 586 (633)
T 2gai_A 555 TNQKC-SCGKEMRLSFGKYGFYLKCECGKTRSV 586 (633)
T ss_dssp EEEEC-TTSCEEEEEEETTEEEEECSSSCCEEC
T ss_pred ccchh-hcCceeeecccccccCcccCCCcceee
Confidence 45679 99987766543334699999 666654
No 266
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=62.66 E-value=4.4 Score=26.01 Aligned_cols=9 Identities=22% Similarity=0.634 Sum_probs=4.9
Q ss_pred eeEcCCCCC
Q 035461 26 VIQCRECGY 34 (51)
Q Consensus 26 ~irC~~CG~ 34 (51)
...||.|+.
T Consensus 217 ~~~CP~C~~ 225 (238)
T 3nw0_A 217 EPRCPHCND 225 (238)
T ss_dssp SCBCTTTCC
T ss_pred CCCCCCCCC
Confidence 445666654
No 267
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.27 E-value=4.3 Score=18.08 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=12.1
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em2_A 10 EKPFKCKECGKAFRQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCEECCcCCchhCC
Confidence 345999999999864
No 268
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.00 E-value=3.1 Score=18.59 Aligned_cols=14 Identities=36% Similarity=0.745 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eoz_A 11 KPYSCNVCGKAFVL 24 (46)
T ss_dssp CSEEETTTTEEESS
T ss_pred CCeECcccChhhCC
Confidence 45999999998864
No 269
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=61.68 E-value=2 Score=25.84 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=14.1
Q ss_pred CeeEcCCCCCcEEEEEecCce
Q 035461 25 DVIQCRECGYRILYKKRTRRI 45 (51)
Q Consensus 25 ~~irC~~CG~RIlyK~R~~~~ 45 (51)
+.+.||+||+..-.+..-+.|
T Consensus 98 G~L~Cp~cgr~ypI~~GIPNm 118 (125)
T 3q87_A 98 GSLRCDMCGLIYPIKGSIVET 118 (125)
T ss_dssp EEEEETTTCCEEEEETTEEEC
T ss_pred EEEECCCCCCEeeccCCcccH
Confidence 567888888877666554433
No 270
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.26 E-value=3.2 Score=18.42 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (45)
T 2epu_A 11 KPFECTHCGKSFRA 24 (45)
T ss_dssp CSEEETTTTEEESS
T ss_pred cCccCCCCCCccCC
Confidence 45999999998864
No 271
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=60.89 E-value=5.8 Score=21.30 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=21.8
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCCcEEEEEec
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGYRILYKKRT 42 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~RIlyK~R~ 42 (51)
-.|-.|+...+... .+.+.|+.|| ..|-.|-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~--~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLN--LAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTT--EEEEEET
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCC--ccccCCC
Confidence 46888988877753 4679999987 4444443
No 272
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.80 E-value=5.9 Score=17.31 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (44)
T 2emx_A 9 KPFGCSCCEKAFSS 22 (44)
T ss_dssp CCEECSSSSCEESS
T ss_pred cCccCCCCCcccCC
Confidence 45999999998874
No 273
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=60.57 E-value=1.1 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=18.2
Q ss_pred eEEEcCCCCCeeecCC---------CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLKP---------GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~---------~~~irC~~CG~RI 36 (51)
..|.|..|+..|.... ..+..|+.||...
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f 52 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRF 52 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCB
T ss_pred cCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCcc
Confidence 4578888888775421 1346787777643
No 274
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.32 E-value=4.9 Score=17.81 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (46)
T 2ep0_A 11 KPYKCDVCHKSFRY 24 (46)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeeCcccCcccCC
Confidence 45999999999874
No 275
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.15 E-value=2.4 Score=18.57 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=11.9
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (42)
T 2eos_A 9 EKPYPCEICGTRFRH 23 (42)
T ss_dssp SCCBCCSSSCCCBSS
T ss_pred CCCEECCCCCCccCC
Confidence 345999999998864
No 276
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=60.12 E-value=3.3 Score=27.53 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=18.1
Q ss_pred EEEcCCCCCe---eecC-CCCeeEcCCCCC
Q 035461 9 SYICGDCGME---NTLK-PGDVIQCRECGY 34 (51)
Q Consensus 9 ~Y~C~~Cg~~---~~~~-~~~~irC~~CG~ 34 (51)
...|.+||.. +..+ ..+.+-|..||.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 4479999885 2222 345689999996
No 277
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=60.04 E-value=4.3 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.638 Sum_probs=16.3
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|.-|++.+- .+++|.+|+++.
T Consensus 16 ~C~~C~k~i~----~G~kC~~Ck~~c 37 (49)
T 1kbe_A 16 VCNVCQKSMI----FGVKCKHCRLKC 37 (49)
T ss_dssp CCSSSCCSSC----CEEEETTTTEEE
T ss_pred CccccCceeE----CcCCCCCCCCcc
Confidence 4888888763 358999998763
No 278
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.70 E-value=2.4 Score=18.42 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQ 23 (42)
T ss_dssp CSBCCTTTTCCBSS
T ss_pred CCeeCCCccchhCC
Confidence 45999999998864
No 279
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=59.40 E-value=6.7 Score=21.12 Aligned_cols=23 Identities=30% Similarity=0.761 Sum_probs=16.2
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCC
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.|..|+..|.+-. .--.|..||.
T Consensus 21 ~C~~C~~~Fs~~~-RrHHCR~CG~ 43 (82)
T 2yw8_A 21 HCRQCEKEFSISR-RKHHCRNCGH 43 (82)
T ss_dssp BCTTTCCBCBTTB-CCEECTTTCC
T ss_pred cccCcCCcccCcc-ccccCCCCCC
Confidence 5999999998653 3456666664
No 280
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=59.30 E-value=3 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=22.1
Q ss_pred eEEEcCC--CCCeeecCC--------CCeeEcCCCCCc
Q 035461 8 VSYICGD--CGMENTLKP--------GDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~--Cg~~~~~~~--------~~~irC~~CG~R 35 (51)
..|.|.. ||.++.... ..+..||.|+.+
T Consensus 134 ~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~ 171 (595)
T 3f9v_A 134 ATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 171 (595)
T ss_dssp CCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred EEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC
Confidence 6799999 998877552 256799999985
No 281
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=59.05 E-value=10 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=23.1
Q ss_pred ceEEEcCC--CCCeeecCCCCeeEcCCCCCc
Q 035461 7 PVSYICGD--CGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 7 ~~~Y~C~~--Cg~~~~~~~~~~irC~~CG~R 35 (51)
.....|.. |++.+.....+.-+|+.||.-
T Consensus 306 ~~Y~aC~~~~C~kkv~~~~~g~~~C~~C~~~ 336 (444)
T 4gop_C 306 LYYTACASEGCNKKVNLDHENNWRCEKCDRS 336 (444)
T ss_dssp CEEEECCSTTCCCBEEECTTSCEEETTTTEE
T ss_pred eEEccCCcccCCCccccCCCccEECCCCCCc
Confidence 46678998 999987665567999999843
No 282
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.88 E-value=2.4 Score=18.89 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emg_A 11 NPFICSECGKVFTH 24 (46)
T ss_dssp CSCBCTTTCCBCSS
T ss_pred CCEECCccCcccCC
Confidence 45999999998864
No 283
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.39 E-value=2.5 Score=18.32 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2yte_A 9 KPYSCAECKETFSD 22 (42)
T ss_dssp CSCBCTTTCCBCSS
T ss_pred CCeECCCCCCccCC
Confidence 34899999998864
No 284
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=58.36 E-value=4.5 Score=25.46 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=16.3
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|.. |..........++||+||..-
T Consensus 171 ~c~~-g~~m~~~~~~~m~cp~cg~~E 195 (209)
T 2nn6_I 171 HSES-GIQMVPISWCEMQCPKTHTKE 195 (209)
T ss_dssp BCSS-SCBCEEEETTEEECTTTTCCB
T ss_pred EcCC-CCEEEEccCCEEECCCCCCEE
Confidence 4555 554444344789999999653
No 285
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=57.84 E-value=5.9 Score=22.03 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=22.3
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEEe
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYRILYKKR 41 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R 41 (51)
...+|..|++.+.+- +..|. ||.-+.-+-|
T Consensus 24 ~~nRC~~CrKkvgL~---gf~Cr-Cg~~FCs~HR 53 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT---GFDCR-CGNLFCGLHR 53 (74)
T ss_dssp CTTBCSSSCCBCGGG---CEECT-TSCEECSSSC
T ss_pred cCCcChhhCCccccc---CeecC-CCCEechhcC
Confidence 446899999998875 48998 9976654444
No 286
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=57.05 E-value=7.1 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.444 Sum_probs=20.0
Q ss_pred eEEEcCC--CCCeeecC-------CCCeeEcCCCCCc
Q 035461 8 VSYICGD--CGMENTLK-------PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~--Cg~~~~~~-------~~~~irC~~CG~R 35 (51)
....|.+ |+.....+ ....-+||.||..
T Consensus 158 ~~~~C~~~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 194 (323)
T 1j8f_A 158 YTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL 194 (323)
T ss_dssp EEEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCB
T ss_pred ceeecCCCccCccccHHHHHHhhccCCCCCCcCCCCc
Confidence 3567999 99986532 2234699999985
No 287
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.48 E-value=2.9 Score=18.64 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2enf_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp CSCBCSSSCCBCSS
T ss_pred cCeECCCCCcccCC
Confidence 45999999998864
No 288
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.31 E-value=7.9 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=16.2
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
-.|..|+..|.+.. .--.|+.||.
T Consensus 70 ~~C~~C~~~Fs~~~-RrHHCR~CG~ 93 (125)
T 1joc_A 70 QNCMACGKGFSVTV-RRHHCRQCGN 93 (125)
T ss_dssp CBCTTTCCBCCSSS-CCEECTTTCC
T ss_pred CCCcCcCCcccccc-ccccCCCCCe
Confidence 36999999998653 3355666654
No 289
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=56.01 E-value=6.6 Score=22.28 Aligned_cols=25 Identities=32% Similarity=0.740 Sum_probs=18.0
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
..-+|..|++.+.+. .+..|. ||.-
T Consensus 24 ~~~rC~~C~kkvgl~--~~f~Cr-Cg~~ 48 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA--TSFECR-CGNN 48 (85)
T ss_dssp CCCBCSSSCCBCSSS--SCEECT-TCCE
T ss_pred cCccchhhCCeeccc--CCeEcC-CCCE
Confidence 446889999887664 358885 8864
No 290
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=55.55 E-value=8.9 Score=20.71 Aligned_cols=24 Identities=38% Similarity=0.826 Sum_probs=16.1
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
-.|..|+..|.+-. .--.|+.||.
T Consensus 22 ~~C~~C~~~Fs~~~-RrHHCR~CG~ 45 (84)
T 1z2q_A 22 PACNGCGCVFTTTV-RRHHCRNCGY 45 (84)
T ss_dssp CBCTTTCCBCCTTS-CCEECTTTCC
T ss_pred CCCcCcCCccccch-hcccccCCCc
Confidence 36999999998753 3355555553
No 291
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=55.43 E-value=7.1 Score=19.85 Aligned_cols=19 Identities=32% Similarity=0.906 Sum_probs=14.0
Q ss_pred CCceEE-EcCCCCCeeecCC
Q 035461 5 PEPVSY-ICGDCGMENTLKP 23 (51)
Q Consensus 5 ~~~~~Y-~C~~Cg~~~~~~~ 23 (51)
.+++.| +|..||+.+.+++
T Consensus 12 e~~~~YRvC~~CgkPi~lsA 31 (44)
T 2lo3_A 12 DKPIQYRVCEKCGKPLALTA 31 (44)
T ss_dssp CCCCCEEECTTTCCEEETTT
T ss_pred CccccchhhcccCCcchHHH
Confidence 345555 6999999998764
No 292
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.41 E-value=2.8 Score=18.40 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 11 NPYECCECGKVFSR 24 (44)
T ss_dssp CSCEETTTTEECSS
T ss_pred cCeeCCCCCCccCC
Confidence 45999999998764
No 293
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.31 E-value=3.1 Score=22.12 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=16.0
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|..|+..+---...+++|..|+..
T Consensus 30 ~C~~C~~~lwGl~kqG~~C~~C~~~ 54 (74)
T 2db6_A 30 FCDVCARMIVLNNKFGLRCKNCKTN 54 (74)
T ss_dssp ECSSSCCEECHHHHEEEEESSSCCE
T ss_pred CchhcChhhccccCCccccCCCCCc
Confidence 4777777653222367888888764
No 294
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=54.64 E-value=8.4 Score=19.49 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.7
Q ss_pred eEEEcC--CCCCeee
Q 035461 8 VSYICG--DCGMENT 20 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~ 20 (51)
..|.|. .||..|.
T Consensus 14 ~~~~C~~~~C~~~f~ 28 (100)
T 2ebt_A 14 RIHYCDYPGCTKVYT 28 (100)
T ss_dssp CCEECCSSSCCCEES
T ss_pred cceEcCCCCCCCccc
Confidence 456666 3666664
No 295
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.59 E-value=3.2 Score=18.54 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=11.9
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
..|.|..||+.|...
T Consensus 11 k~~~C~~C~k~F~~~ 25 (46)
T 2enh_A 11 KPYECDVCRKAFSHH 25 (46)
T ss_dssp SSCBCTTTCCBCSSS
T ss_pred CCcCCCCcCchhCCH
Confidence 459999999988653
No 296
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.41 E-value=3.2 Score=18.51 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2em6_A 11 KCYKCDVCGKEFSQ 24 (46)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred CCeECCCCCcccCC
Confidence 45999999998864
No 297
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.30 E-value=3.4 Score=18.45 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yth_A 11 KPFQCEECGKRFTQ 24 (46)
T ss_dssp SSBCCSSSCCCBSS
T ss_pred cCCCCCCCCcccCC
Confidence 44999999998864
No 298
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.24 E-value=3.2 Score=18.51 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.9
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|.-
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2en9_A 10 KKLFKCNECKKTFTQ 24 (46)
T ss_dssp SCCCBCTTTCCBCSS
T ss_pred CCCEECCccCcccCC
Confidence 345999999998864
No 299
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=54.20 E-value=3.9 Score=21.26 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=20.1
Q ss_pred EcCCCCCeeecCCC-CeeEcCC--CCCcE
Q 035461 11 ICGDCGMENTLKPG-DVIQCRE--CGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~-~~irC~~--CG~RI 36 (51)
.|..|+..++...+ .-|.|+. ||+..
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCC
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEE
Confidence 58889999888765 5688887 87654
No 300
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.13 E-value=3.4 Score=18.29 Aligned_cols=14 Identities=14% Similarity=0.600 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 9 GAFFCNECDCRFSE 22 (43)
T ss_dssp CCBCCSSSCCCBSS
T ss_pred CCEECCCCCCeeCC
Confidence 45999999998864
No 301
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.00 E-value=3.3 Score=18.54 Aligned_cols=14 Identities=29% Similarity=0.648 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
-.|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 11 KPYKCQVCGKAFRV 24 (46)
T ss_dssp CSCBCSSSCCBCSS
T ss_pred cccCCCCCCcccCc
Confidence 45999999998864
No 302
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=53.76 E-value=9.6 Score=26.63 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=17.7
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+..+---...+.+|..||..+
T Consensus 531 ~C~~C~~~l~gl~~qg~~C~~C~~~v 556 (587)
T 3ky9_A 531 SCKACQMLLRGTFYQGYRCHRCRASA 556 (587)
T ss_dssp BCTTTCSBCCSSSCCEEEETTTCCEE
T ss_pred ccccccccccccccCCcCCCCCCCcc
Confidence 58888887643344678888888543
No 303
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.08 E-value=3.1 Score=18.53 Aligned_cols=15 Identities=27% Similarity=0.682 Sum_probs=11.9
Q ss_pred ceEEEcCCCCCeeec
Q 035461 7 PVSYICGDCGMENTL 21 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~ 21 (51)
...|.|..||+.|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 10 EKPYKCNECGKAFRA 24 (46)
T ss_dssp SCCCCCTTTTCCCSS
T ss_pred CCCeECCcCChhhCC
Confidence 345999999998864
No 304
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.07 E-value=2.7 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2en7_A 11 KPYVCNECGKAFRS 24 (44)
T ss_dssp SSSCCTTTCCCCSS
T ss_pred cCeECCCCCCccCC
Confidence 45899999998764
No 305
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.95 E-value=3.2 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2eom_A 11 RGHRCSDCGKFFLQ 24 (46)
T ss_dssp SSCCCSSSCCCCSS
T ss_pred CCcCCCCCCCeeCC
Confidence 45999999998864
No 306
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.52 E-value=3.2 Score=18.33 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (44)
T 2eou_A 11 TTSECQECGKIFRH 24 (44)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 45899999998864
No 307
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.41 E-value=3.3 Score=18.49 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
-.|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 11 KPYECKECRKTFIQ 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCCcCchhCC
Confidence 45899999998864
No 308
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.38 E-value=3.8 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=11.5
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (47)
T 2epx_A 11 KPYECIECGKAFIQ 24 (47)
T ss_dssp CSBCCSSSCCCBSS
T ss_pred CCEECCccCchhCC
Confidence 45999999998874
No 309
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.22 E-value=9.4 Score=23.66 Aligned_cols=24 Identities=33% Similarity=0.804 Sum_probs=15.7
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
-.|..|+..|.+-. .--.|+.||.
T Consensus 162 ~~C~~C~~~F~~~~-rrhhCr~CG~ 185 (220)
T 1dvp_A 162 RVCHRCRVEFTFTN-RKHHCRNCGQ 185 (220)
T ss_dssp SBCTTTCCBCCSSS-CCEECTTTCC
T ss_pred CccCCCCCccCCcc-cccccCCcCC
Confidence 37999999998653 3345555553
No 310
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=52.14 E-value=11 Score=20.72 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=16.6
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
-.|..|+..|.+-. ..-.|+.||.
T Consensus 21 ~~C~~C~~~F~~~~-RrhhCr~CG~ 44 (90)
T 3t7l_A 21 PNCMNCQVKFTFTK-RRHHCRACGK 44 (90)
T ss_dssp CBCTTTCCBCCSSS-CCEECTTTCC
T ss_pred CcCcCCCCcccchh-hCccccCCCC
Confidence 46999999998653 3355666654
No 311
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=52.08 E-value=11 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.659 Sum_probs=18.8
Q ss_pred EEEcCCCCCeeecCC--------CCeeEcCCCCCc
Q 035461 9 SYICGDCGMENTLKP--------GDVIQCRECGYR 35 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~--------~~~irC~~CG~R 35 (51)
-|+|.+|...--+.. .+.-.||.||..
T Consensus 502 hy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~ 536 (1041)
T 3f2b_A 502 HYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTK 536 (1041)
T ss_dssp EEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCB
T ss_pred cccCccccccccccccccccccCCccccCcccccc
Confidence 499999987332221 256899999865
No 312
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=51.91 E-value=8.3 Score=22.52 Aligned_cols=31 Identities=26% Similarity=0.721 Sum_probs=23.2
Q ss_pred eEEEcCCCCCeeecC-------CC-CeeEcCCCCCcEEE
Q 035461 8 VSYICGDCGMENTLK-------PG-DVIQCRECGYRILY 38 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~-~~irC~~CG~RIly 38 (51)
+.|.|..|+....-. .+ --|+||.|..+=|.
T Consensus 12 l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlI 50 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLI 50 (100)
T ss_dssp EEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEES
T ss_pred EEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEe
Confidence 899999999876532 22 34999999987553
No 313
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.45 E-value=3.5 Score=18.40 Aligned_cols=14 Identities=21% Similarity=0.608 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emz_A 11 RPFKCNECGKGFGR 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCeECCCCCcccCC
Confidence 45999999998764
No 314
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.89 E-value=3.1 Score=18.45 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.3
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 11 KPYECSDCGKSFIK 24 (46)
T ss_dssp CSSCCSSSCCCCSS
T ss_pred CCcCCCCCCchhCC
Confidence 45899999998864
No 315
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.86 E-value=2.9 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 11 KPYQCNECGKAFSQ 24 (46)
T ss_dssp CSSSCCSSCCCCSS
T ss_pred CCeECCCCCcccCC
Confidence 45899999998864
No 316
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=50.81 E-value=6.1 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=18.1
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
..-.|..|+..|.+- ...-.|+.||.
T Consensus 18 ~~~~C~~C~~~Fs~~-~RkHHCR~CG~ 43 (120)
T 1y02_A 18 LEPSCKSCGAHFANT-ARKQTCLDCKK 43 (120)
T ss_dssp --CCCTTTCCCCSSG-GGCEECTTTCC
T ss_pred ccCcccCcCCccccc-cccccCCCCCC
Confidence 345799999999864 34567888875
No 317
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=50.60 E-value=7.7 Score=22.10 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=19.2
Q ss_pred EEEcCCCCCeeecCCCCeeEcC--CCCCcE
Q 035461 9 SYICGDCGMENTLKPGDVIQCR--ECGYRI 36 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~--~CG~RI 36 (51)
..+|.+|++.+.... ..|. .|||.-
T Consensus 93 ~~ic~~~~~~~~~~~---~~~~~~~c~~~~ 119 (128)
T 3u5e_m 93 KSVCRKCYARLPPRA---TNCRKRKCGHTN 119 (128)
T ss_dssp CEEETTTCCEECTTC---SSCSCTTTTSCC
T ss_pred eEeeccccccCCchh---hccchhhCCCcc
Confidence 478999999987654 7788 598743
No 318
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.50 E-value=4.1 Score=18.15 Aligned_cols=14 Identities=29% Similarity=0.705 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytq_A 11 KPYGCSECGKAFSS 24 (46)
T ss_dssp CSCBCSSSCCBCSC
T ss_pred CCcCCCccChhhCC
Confidence 45999999999874
No 319
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.37 E-value=3.3 Score=18.36 Aligned_cols=14 Identities=29% Similarity=0.797 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eq3_A 11 KPYECNQCGKAFSV 24 (46)
T ss_dssp CSSEETTTTEECSS
T ss_pred CCeECCCCChhhCC
Confidence 45899999998864
No 320
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=49.88 E-value=9 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=18.6
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.-.|-.||..........+-|+.||.
T Consensus 10 ~~~Cw~C~~~~~~~~~~~~fC~~c~~ 35 (207)
T 3bvo_A 10 YPRCWNCGGPWGPGREDRFFCPQCRA 35 (207)
T ss_dssp -CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred CCCCCCCCCCcccccccccccccccc
Confidence 34699999875444556789999985
No 321
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.77 E-value=3 Score=18.57 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2yti_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp CTTCCSSSCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 44899999998864
No 322
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.39 E-value=12 Score=20.15 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=10.0
Q ss_pred EcCCCCCeeecC
Q 035461 11 ICGDCGMENTLK 22 (51)
Q Consensus 11 ~C~~Cg~~~~~~ 22 (51)
.|..|+..|.+-
T Consensus 16 ~C~~C~~~F~~~ 27 (84)
T 1x4u_A 16 NCTGCSATFSVL 27 (84)
T ss_dssp SCSSSCCCCCSS
T ss_pred cCcCcCCccccc
Confidence 588999999765
No 323
>2gag_D Heterotetrameric sarcosine oxidase delta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_D* 1x31_D* 1vrq_D* 3ad7_D* 3ad8_D* 3ad9_D* 3ada_D*
Probab=49.31 E-value=3.7 Score=23.93 Aligned_cols=10 Identities=50% Similarity=1.262 Sum_probs=7.9
Q ss_pred eeEcCCCCCc
Q 035461 26 VIQCRECGYR 35 (51)
Q Consensus 26 ~irC~~CG~R 35 (51)
-|.||+||-|
T Consensus 3 ~I~CP~CG~R 12 (99)
T 2gag_D 3 LIDCPNCGPR 12 (99)
T ss_dssp EEEETTTEEE
T ss_pred EecCCCCCCc
Confidence 4889999954
No 324
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=49.03 E-value=4 Score=18.11 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.6
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2em0_A 11 KTWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCCSSSCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 45999999999874
No 325
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=48.87 E-value=18 Score=20.06 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=15.7
Q ss_pred cCCCCCeeecCCCC--eeEcCCCCCcE
Q 035461 12 CGDCGMENTLKPGD--VIQCRECGYRI 36 (51)
Q Consensus 12 C~~Cg~~~~~~~~~--~irC~~CG~RI 36 (51)
|..|+..+---... +..|..|+..+
T Consensus 38 Cd~C~~~lWGl~kqp~G~~C~~C~~~~ 64 (84)
T 2row_A 38 CEACMKPLWHMFKPPPALECRRCHIKC 64 (84)
T ss_dssp CSSSSSEECCSSSCCCEEEESSSCCEE
T ss_pred hhhcCHhhhccccCCCCCEecCCCCcc
Confidence 77777765433333 78888887643
No 326
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=48.59 E-value=5.3 Score=22.44 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=8.2
Q ss_pred eEcCCCCCcE
Q 035461 27 IQCRECGYRI 36 (51)
Q Consensus 27 irC~~CG~RI 36 (51)
--||||++|.
T Consensus 31 NiCPYC~nRl 40 (77)
T 2l7x_A 31 NICPYCASRL 40 (77)
T ss_dssp TCCTTTCCCC
T ss_pred ccChhhhccC
Confidence 4699999985
No 327
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=48.23 E-value=4.7 Score=16.18 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=8.9
Q ss_pred EEcC--CCCCeeec
Q 035461 10 YICG--DCGMENTL 21 (51)
Q Consensus 10 Y~C~--~Cg~~~~~ 21 (51)
|.|. .||+.|..
T Consensus 3 ~~C~~~~C~k~f~~ 16 (31)
T 1sp2_A 3 FMCTWSYCGKRFTR 16 (31)
T ss_dssp CBCCSTTCCCBCSS
T ss_pred cCCcCCCCCcccCC
Confidence 7787 88887753
No 328
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.97 E-value=22 Score=16.66 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=21.2
Q ss_pred ceEEEcCCCCCeeecCC----CCeeEcCCCCCc
Q 035461 7 PVSYICGDCGMENTLKP----GDVIQCRECGYR 35 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~----~~~irC~~CG~R 35 (51)
...|.|..||+.|.... ..+..|+.||..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~ 48 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKD 48 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCCSSSCCCHHHHHT
T ss_pred CCCeeCCcccchhCCHHHhCcCCCCCCCCCChh
Confidence 35699999999987542 345778888754
No 329
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.93 E-value=14 Score=20.31 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=14.7
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECG 33 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG 33 (51)
-.|..|+..|.+-. .--.|..||
T Consensus 10 ~~C~~C~~~F~~~~-RrHHCR~CG 32 (88)
T 1wfk_A 10 SRCYGCAVKFTLFK-KEYGCKNCG 32 (88)
T ss_dssp SBCTTTCCBCCSSS-CEEECSSSC
T ss_pred CCCcCcCCcccCcc-ccccCCCCC
Confidence 36899999998753 334444444
No 330
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=47.87 E-value=12 Score=26.08 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=18.4
Q ss_pred cCCCCCeeecCCCCeeEcCCCCCcEEEEE
Q 035461 12 CGDCGMENTLKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 12 C~~Cg~~~~~~~~~~irC~~CG~RIlyK~ 40 (51)
|-.||..++......-+|..||..+.++.
T Consensus 171 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~ 199 (560)
T 3h99_A 171 CEVCGATYSPTELIEPKSVVSGATPVMRD 199 (560)
T ss_dssp CTTTCCBCCGGGCEEEEETTTCCCCEEEE
T ss_pred hhhccccCChhhhcCCccccCCCCceEEe
Confidence 44555555444334468888998888654
No 331
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=47.82 E-value=4.4 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.686 Sum_probs=17.4
Q ss_pred eEEEc--CCCCCeeecC-----------CCCeeEc--CCCCCc
Q 035461 8 VSYIC--GDCGMENTLK-----------PGDVIQC--RECGYR 35 (51)
Q Consensus 8 ~~Y~C--~~Cg~~~~~~-----------~~~~irC--~~CG~R 35 (51)
-.|.| ..||+.|... ...+..| +.||..
T Consensus 11 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~ 53 (190)
T 1tf6_A 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKG 53 (190)
T ss_dssp CCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCC
T ss_pred cceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChh
Confidence 45778 5788777532 2245677 667754
No 332
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=47.07 E-value=20 Score=19.94 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=15.5
Q ss_pred eEcCCCCCcEEEEEec-CceEEEE
Q 035461 27 IQCRECGYRILYKKRT-RRIVQYE 49 (51)
Q Consensus 27 irC~~CG~RIlyK~R~-~~~~~~~ 49 (51)
.-|+.||..+.+.... +..+.+.
T Consensus 68 ~FC~~CGs~l~~~~~~~~~~~~V~ 91 (118)
T 3fac_A 68 WFCRTCGIYTHHQRRSNPEEYGVN 91 (118)
T ss_dssp EEETTTCCEEEEECSSCTTEEEEE
T ss_pred EECCCCCccccCccCCCCCEEEEE
Confidence 5699999999887543 3334443
No 333
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=46.93 E-value=14 Score=25.16 Aligned_cols=26 Identities=19% Similarity=0.450 Sum_probs=17.8
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.|..|+.-+--....+.+|..||..+
T Consensus 222 ~C~~C~~~l~g~~~qg~~C~~C~~~~ 247 (463)
T 3cxl_A 222 WCEYCANFMWGLIAQGVKCADCGLNV 247 (463)
T ss_dssp BCTTTCCBCCSSSCCEEEETTTCCEE
T ss_pred cchhhhhhhhhHHhcCeeccccCccc
Confidence 48888876532334678999998753
No 334
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=45.90 E-value=22 Score=16.15 Aligned_cols=25 Identities=28% Similarity=0.772 Sum_probs=17.0
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
+-...|..||..+.... ..|-.||.
T Consensus 3 ~gDW~C~~C~~~Nfa~r---~~C~~C~~ 27 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKR---LKCFRCGA 27 (32)
T ss_dssp CSEEECTTTCCEEETTC---CBCTTTCC
T ss_pred CCCCCcCcCcCCcChhc---ceecCCCC
Confidence 34578888988876654 55666663
No 335
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.77 E-value=13 Score=23.34 Aligned_cols=22 Identities=27% Similarity=0.735 Sum_probs=14.8
Q ss_pred EcCCCCCeeecCCCCeeEcCCCC
Q 035461 11 ICGDCGMENTLKPGDVIQCRECG 33 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG 33 (51)
.|..|+..|.+-. .--.|+.||
T Consensus 166 ~C~~C~~~F~~~~-RrhHCR~CG 187 (226)
T 3zyq_A 166 ECHRCRVQFGVMT-RKHHCRACG 187 (226)
T ss_dssp BCTTTCCBCBTTB-CCEECTTTC
T ss_pred CCcCcCCCCCccc-cccccCCCc
Confidence 7999999998653 234455554
No 336
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=45.75 E-value=12 Score=15.59 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=10.8
Q ss_pred eEEEcC--CCCCeeec
Q 035461 8 VSYICG--DCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~~ 21 (51)
..|.|. .||+.|..
T Consensus 5 k~~~C~~~~C~k~f~~ 20 (38)
T 1bhi_A 5 KPFLCTAPGCGQRFTN 20 (38)
T ss_dssp CCEECCCTTTCCEESS
T ss_pred cceECCCCCCCcccCC
Confidence 349999 69998764
No 337
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=45.47 E-value=10 Score=24.55 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.1
Q ss_pred eEEEcCCCCCeee
Q 035461 8 VSYICGDCGMENT 20 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~ 20 (51)
....|.+||....
T Consensus 133 ~~~~C~~C~~~~~ 145 (273)
T 3riy_A 133 FKTRCTSCGVVAE 145 (273)
T ss_dssp EEEEETTTCCEEE
T ss_pred CeeEcCCCCCccc
Confidence 4568999999864
No 338
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=45.40 E-value=25 Score=16.74 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=21.6
Q ss_pred ceEEEcCC--CCCeeecC-----------CCCeeEcCC--CCCcE
Q 035461 7 PVSYICGD--CGMENTLK-----------PGDVIQCRE--CGYRI 36 (51)
Q Consensus 7 ~~~Y~C~~--Cg~~~~~~-----------~~~~irC~~--CG~RI 36 (51)
...|.|.. ||+.|... ...+..|+. ||...
T Consensus 15 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f 59 (72)
T 2epa_A 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRF 59 (72)
T ss_dssp CCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEE
T ss_pred cCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCccc
Confidence 36799988 99998642 235689964 99754
No 339
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=45.24 E-value=5.8 Score=15.94 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.4
Q ss_pred EEcC--CCCCeeec
Q 035461 10 YICG--DCGMENTL 21 (51)
Q Consensus 10 Y~C~--~Cg~~~~~ 21 (51)
|.|. .||+.|..
T Consensus 4 ~~C~~~~C~k~f~~ 17 (32)
T 1zfd_A 4 YSCDHPGCDKAFVR 17 (32)
T ss_dssp BCCCCTTCCCCBSS
T ss_pred CcCcCCCCCCccCC
Confidence 7888 89888754
No 340
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=44.69 E-value=13 Score=15.57 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.2
Q ss_pred eEEEcC--CCCCeeec
Q 035461 8 VSYICG--DCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~~ 21 (51)
..|.|. .||+.|..
T Consensus 7 k~~~C~~~~C~k~f~~ 22 (37)
T 1va1_A 7 KQHICHIQGCGKVYGK 22 (37)
T ss_dssp CCEECCSTTCCCEESC
T ss_pred CCCCCCCCCCCCccCC
Confidence 458897 59888753
No 341
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.68 E-value=11 Score=21.42 Aligned_cols=15 Identities=20% Similarity=0.282 Sum_probs=12.8
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|.+||+.+++.
T Consensus 90 ~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 90 DHMVCVDTGEVIEFM 104 (136)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred eEEEECCCCCEEEec
Confidence 457999999999985
No 342
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=44.45 E-value=18 Score=18.59 Aligned_cols=12 Identities=8% Similarity=0.083 Sum_probs=7.2
Q ss_pred CeeEcCCCCCcE
Q 035461 25 DVIQCRECGYRI 36 (51)
Q Consensus 25 ~~irC~~CG~RI 36 (51)
..+.||+||.-.
T Consensus 26 ~l~~c~~cGe~~ 37 (56)
T 3r8s_0 26 SLSVDKTSGEKH 37 (56)
T ss_dssp CEEECTTTCCEE
T ss_pred ceeECCCCCCee
Confidence 356677777643
No 343
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=44.03 E-value=7 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=20.6
Q ss_pred CceEEEcCCCCCeeecCC--CCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLKP--GDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~--~~~irC~~CG~RI 36 (51)
+...-+|.+|+..+-.+. ...-.||.|||..
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 345678899988776552 2346788888763
No 344
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=43.96 E-value=19 Score=21.31 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.6
Q ss_pred CcEEEEEecCceEEEEcC
Q 035461 34 YRILYKKRTRRIVQYEAR 51 (51)
Q Consensus 34 ~RIlyK~R~~~~~~~~Ar 51 (51)
+-|++++|+..+.|||-+
T Consensus 35 ~~i~f~KRt~GiRqfEi~ 52 (108)
T 1kaf_A 35 YLAILEKRTNGIRNFEIN 52 (108)
T ss_dssp EEEEEEEEETTEEEEEEC
T ss_pred eEEeeecccCceeEEEEe
Confidence 678999999999999853
No 345
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=43.83 E-value=5 Score=22.56 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=23.6
Q ss_pred ceEEEcCCCCCee--ecC-----CCCeeEcCCCCCcEEEE
Q 035461 7 PVSYICGDCGMEN--TLK-----PGDVIQCRECGYRILYK 39 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~--~~~-----~~~~irC~~CG~RIlyK 39 (51)
+..|.|.-||.+. +.+ ....|.|..||-+.=++
T Consensus 21 ~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~ 60 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60 (85)
T ss_dssp SSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEE
T ss_pred CCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEec
Confidence 3678999999983 332 12679999999776543
No 346
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=43.73 E-value=6.9 Score=23.98 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=18.0
Q ss_pred EcCCCCCeeec-C---CCCeeEcCCCCCcEE
Q 035461 11 ICGDCGMENTL-K---PGDVIQCRECGYRIL 37 (51)
Q Consensus 11 ~C~~Cg~~~~~-~---~~~~irC~~CG~RIl 37 (51)
+|..||.+-.. . ..-.++|..||++--
T Consensus 106 lC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 106 ICPVCGSPDTKIIKRDRFHFLKCEACGAETP 136 (148)
T ss_dssp SCSSSCCTTCCCCBSSSSBCCCCSSSCCCCC
T ss_pred ECCCCCCcCcEEEEeCCEEEEEecCCCCCcc
Confidence 58999775442 1 224589999998643
No 347
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=43.52 E-value=13 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.825 Sum_probs=17.3
Q ss_pred EcCCCCCeeec---C-CCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTL---K-PGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~---~-~~~~irC~~CG~R 35 (51)
+|..|+..-.. + ..-.++|.-||++
T Consensus 104 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred ECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 58889776432 1 2356999999975
No 348
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.41 E-value=14 Score=19.06 Aligned_cols=29 Identities=28% Similarity=0.606 Sum_probs=17.7
Q ss_pred eEEEcCCCCCeeecC---CC------CeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK---PG------DVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~---~~------~~irC~~CG~RI 36 (51)
..-+|..|+..+..+ .. +=.+|..|+..+
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L 51 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKEL 51 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBC
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCcc
Confidence 456788888877632 11 225777776543
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.78 E-value=13 Score=21.46 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=12.7
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
--.+|.+||+.+++.
T Consensus 86 ~HliC~~Cg~v~~~~ 100 (139)
T 3mwm_A 86 HHLVCRACGKAVEVE 100 (139)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred cEEEECCCCCEeecc
Confidence 457899999999875
No 350
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.69 E-value=8.7 Score=21.26 Aligned_cols=11 Identities=27% Similarity=0.712 Sum_probs=8.8
Q ss_pred eeEcCCCCCcE
Q 035461 26 VIQCRECGYRI 36 (51)
Q Consensus 26 ~irC~~CG~RI 36 (51)
+-.||-||..+
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 56799999864
No 351
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=42.55 E-value=19 Score=19.58 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=5.6
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
-.|..||+.+.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 34555555554
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.51 E-value=12 Score=21.63 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=12.7
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|..||+.+++.
T Consensus 89 ~HliC~~Cg~v~~~~ 103 (145)
T 3eyy_A 89 IHLVCRDCTNVIEAD 103 (145)
T ss_dssp EEEEESSSSCEEEEC
T ss_pred eEEEECCCCCEEEec
Confidence 568899999998875
No 353
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=42.45 E-value=16 Score=18.42 Aligned_cols=25 Identities=28% Similarity=0.760 Sum_probs=18.0
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
-.|.-|+.......+..|.|..|..
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~ 31 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQ 31 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCh
Confidence 3588888765555667888888864
No 354
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=42.10 E-value=7.3 Score=23.57 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=14.1
Q ss_pred EcCCCCCeeec-C---CCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTL-K---PGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~-~---~~~~irC~~CG~R 35 (51)
+|..|+..-.. . ..-.++|.-||++
T Consensus 105 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 105 ECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred ECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 69999876442 1 1245899999975
No 355
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.92 E-value=13 Score=21.41 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.2
Q ss_pred eEEEcCCCCCeeecCC
Q 035461 8 VSYICGDCGMENTLKP 23 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~ 23 (51)
.-.+|.+||+.+++..
T Consensus 92 ~HliC~~Cg~v~~~~~ 107 (145)
T 2fe3_A 92 YHAICENCGKIVDFHY 107 (145)
T ss_dssp EEEEETTTCCEEECCC
T ss_pred ceEEECCCCCEEEecC
Confidence 4579999999999863
No 356
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.70 E-value=4.7 Score=17.91 Aligned_cols=14 Identities=29% Similarity=0.717 Sum_probs=11.4
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2ytt_A 11 KPYQCSECGKSFSG 24 (46)
T ss_dssp CTTCCSSSCCCCSS
T ss_pred CCeeCCCCCcccCC
Confidence 45899999998864
No 357
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.57 E-value=6 Score=20.53 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=12.7
Q ss_pred CceEEEcCCCCCeeec
Q 035461 6 EPVSYICGDCGMENTL 21 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~ 21 (51)
+...|.|..||+.|.-
T Consensus 10 ~ekpy~C~~CgK~F~~ 25 (66)
T 2epp_A 10 EAGILPCGLCGKVFTD 25 (66)
T ss_dssp CCCCCCCTTTCCCCSC
T ss_pred CccCcCCCCCCCccCC
Confidence 3456999999999874
No 358
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=41.10 E-value=14 Score=18.83 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=17.2
Q ss_pred Ec-CCCCCeeecC----------CCCeeEcCCCCCcEEE
Q 035461 11 IC-GDCGMENTLK----------PGDVIQCRECGYRILY 38 (51)
Q Consensus 11 ~C-~~Cg~~~~~~----------~~~~irC~~CG~RIly 38 (51)
.| ..||..+... +...+.|++|+..+..
T Consensus 18 ~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~ 56 (76)
T 2yuc_A 18 PCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSG 56 (76)
T ss_dssp BCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCH
T ss_pred CCCccccHHhhHhHHHhhCHhhCCCcceECCCCCCccCH
Confidence 45 4677666533 2246778888876643
No 359
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.46 E-value=14 Score=21.50 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=13.0
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|.+||+.+++.
T Consensus 98 ~HliC~~Cg~v~~~~ 112 (150)
T 2xig_A 98 DHIICLHCGKIIEFA 112 (150)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred eEEEECCCCCEEEec
Confidence 568999999999985
No 360
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=40.01 E-value=11 Score=21.84 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=13.1
Q ss_pred CceEEEcCCCCCeeecC
Q 035461 6 EPVSYICGDCGMENTLK 22 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~ 22 (51)
+...|+|..||.+|--+
T Consensus 48 e~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 48 EEFVFKCPVCGEEFYGK 64 (95)
T ss_dssp HHSEEECTTTCCEEETT
T ss_pred HHHhhcCCCccHHHhcc
Confidence 34679999999988643
No 361
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.80 E-value=15 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.7
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|.+||+.+++.
T Consensus 89 ~HliC~~Cg~v~~~~ 103 (150)
T 2w57_A 89 DHLVCLDCGEVIEFS 103 (150)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred eEEEECCCCCEEEec
Confidence 457999999999975
No 362
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=39.14 E-value=18 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=11.2
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
+.|.|..||..-.+.
T Consensus 93 vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 93 VVITCLECGYIMRYP 107 (120)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred EEEECCCCCCEEEEc
Confidence 778888888776654
No 363
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=39.09 E-value=17 Score=19.92 Aligned_cols=23 Identities=30% Similarity=0.770 Sum_probs=15.3
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
|.|.-|+... .+-.-+|..|++.
T Consensus 48 ~~C~~C~~~~---~~~~Y~C~~C~f~ 70 (89)
T 1v5n_A 48 YTCDKCEEEG---TIWSYHCDECDFD 70 (89)
T ss_dssp CCCTTTSCCC---CSCEEECTTTCCC
T ss_pred eEeCCCCCcC---CCcEEEcCCCCCe
Confidence 6778887763 2455777777764
No 364
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=38.91 E-value=21 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=6.6
Q ss_pred eEEEcCCCCCeee
Q 035461 8 VSYICGDCGMENT 20 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~ 20 (51)
..+.|..||+.+.
T Consensus 69 ~~~~C~nC~R~va 81 (99)
T 3mhs_C 69 QYIHCENCGRDVS 81 (99)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeEECCCCCCCch
Confidence 4455555555443
No 365
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.91 E-value=15 Score=21.77 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=12.6
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|.+||+.+++.
T Consensus 106 ~HliC~~CG~v~e~~ 120 (162)
T 4ets_A 106 DHMICKNCGKIIEFE 120 (162)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred cEEEECCCCCEEEec
Confidence 457899999999875
No 366
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=38.51 E-value=15 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=8.4
Q ss_pred EcCCCCCeeecCCC
Q 035461 11 ICGDCGMENTLKPG 24 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~ 24 (51)
.|++||..+.++++
T Consensus 35 ~CaRCGg~v~lr~~ 48 (62)
T 2a20_A 35 FCARCGGRVSLRSN 48 (62)
T ss_dssp ECTTSEEEEESSTT
T ss_pred eecccCCEeeecCC
Confidence 46666666666543
No 367
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=38.38 E-value=18 Score=23.94 Aligned_cols=28 Identities=25% Similarity=0.698 Sum_probs=19.7
Q ss_pred eEEEcCCCCCeee---------cC--CCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENT---------LK--PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~---------~~--~~~~irC~~CG~R 35 (51)
..+.|..||...- .+ ..--..|.+|||+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~ 305 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNR 305 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCc
Confidence 4689999986543 23 2344889999997
No 368
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=38.13 E-value=43 Score=18.64 Aligned_cols=27 Identities=26% Similarity=0.737 Sum_probs=16.9
Q ss_pred eEEEcCCCCCeeecC---------CC-CeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLK---------PG-DVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~---------~~-~~irC~~CG~ 34 (51)
|.|.|..||..+.-. .+ ..+-|-.|+-
T Consensus 9 V~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~ 45 (79)
T 1wjv_A 9 VFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGK 45 (79)
T ss_dssp CEEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTE
T ss_pred eEEEcCCCCCeeecccchhHHhhCCCCCcEEecccCC
Confidence 677888888776542 11 3566666663
No 369
>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B
Probab=37.78 E-value=16 Score=20.42 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=11.0
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.|+|-.||..|
T Consensus 53 ~D~V~Cf~C~~~l 65 (94)
T 2poi_A 53 GDTVRCFSCHAAV 65 (94)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEcccCCCEe
Confidence 5889999999765
No 370
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=37.63 E-value=22 Score=22.10 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=18.8
Q ss_pred eEEEcCCCCCe--eecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGME--NTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~--~~~~~~~~irC~~CG~R 35 (51)
-.-.|-.||.. +.+.......|-.||+.
T Consensus 13 ~~~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp EEECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cCCcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 34579999873 33323335999999985
No 371
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=37.47 E-value=15 Score=22.70 Aligned_cols=28 Identities=25% Similarity=0.687 Sum_probs=19.3
Q ss_pred eEEEcCCCCCeee---------cC--CCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENT---------LK--PGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~---------~~--~~~~irC~~CG~R 35 (51)
..+.|..||...- .+ ..--..|.+|||+
T Consensus 136 ~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~ 174 (178)
T 3po3_S 136 DRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNR 174 (178)
T ss_dssp SSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCE
T ss_pred CCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCe
Confidence 4578999986543 13 3345889999987
No 372
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=37.33 E-value=18 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=18.6
Q ss_pred eEEEcCCCCCeeecC-------CCCeeEcCCCC
Q 035461 8 VSYICGDCGMENTLK-------PGDVIQCRECG 33 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~~~irC~~CG 33 (51)
....|..||..+..+ ....-+|+.||
T Consensus 298 ~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 298 ATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp TEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred ceeecCCCCCcCCHHHHHHHHhccCCCCCcccc
Confidence 346899999987643 23456899997
No 373
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=37.07 E-value=15 Score=23.78 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=10.1
Q ss_pred cCCCCCeeecC---CCCeeEcCCC
Q 035461 12 CGDCGMENTLK---PGDVIQCREC 32 (51)
Q Consensus 12 C~~Cg~~~~~~---~~~~irC~~C 32 (51)
|..||..+.-. ....--||.|
T Consensus 238 C~~CG~~I~~~~~~gR~t~~CP~C 261 (266)
T 1ee8_A 238 CPACGRPVERRVVAGRGTHFCPTC 261 (266)
T ss_dssp CTTTCCBCEEEESSSCEEEECTTT
T ss_pred CCCCCCEeeEEEECCCceEECCCC
Confidence 55555554422 2244555555
No 374
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=36.91 E-value=24 Score=17.84 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEE
Q 035461 3 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKK 40 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~ 40 (51)
...+.+.-.|.+|+..=.+-. -.|+.|+.+=+.++
T Consensus 3 ~~~qq~~~~C~~C~GsG~~i~---~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 3 IATDDLETTCPNCNGSGREEP---EPCPKCLGKGVILT 37 (53)
T ss_dssp SCHHHHEEECTTTTTSCEETT---EECTTTTTSSEEEC
T ss_pred eecCceeccCcCCcccccCCC---CcCCCCCCcEEEEE
Confidence 445567788999965544332 68999987655443
No 375
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=36.81 E-value=15 Score=22.79 Aligned_cols=17 Identities=29% Similarity=0.952 Sum_probs=13.0
Q ss_pred CCeeEcCCCCCcEEEEE
Q 035461 24 GDVIQCRECGYRILYKK 40 (51)
Q Consensus 24 ~~~irC~~CG~RIlyK~ 40 (51)
|....||.|++++.|..
T Consensus 76 Gal~~CP~C~G~l~y~~ 92 (160)
T 2riq_A 76 GALLPCEECSGQLVFKS 92 (160)
T ss_dssp CEECCCTTTCCCEEEET
T ss_pred CCCCCCCCCCCEEEEeC
Confidence 34568999998888853
No 376
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.31 E-value=14 Score=18.81 Aligned_cols=25 Identities=32% Similarity=0.813 Sum_probs=12.5
Q ss_pred EEcCCCCCeeecC----CCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLK----PGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~----~~~~irC~~CG~ 34 (51)
+.|..|+..+... .++.+-|..|-.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 64 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGS 64 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhh
Confidence 4566666554322 234566665544
No 377
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=36.03 E-value=33 Score=17.15 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=16.0
Q ss_pred CCCCeeecC------CCCeeEcCCCCCcE
Q 035461 14 DCGMENTLK------PGDVIQCRECGYRI 36 (51)
Q Consensus 14 ~Cg~~~~~~------~~~~irC~~CG~RI 36 (51)
.||..|... ......||.|+..+
T Consensus 25 ~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 25 STGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp TTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 578877743 22367899999775
No 378
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=35.71 E-value=13 Score=23.95 Aligned_cols=10 Identities=40% Similarity=0.903 Sum_probs=5.0
Q ss_pred EcCCCCCcEE
Q 035461 28 QCRECGYRIL 37 (51)
Q Consensus 28 rC~~CG~RIl 37 (51)
-|+.||..|.
T Consensus 236 pC~~CG~~I~ 245 (262)
T 1k3x_A 236 PCERCGSIIE 245 (262)
T ss_dssp BCTTTCCBCE
T ss_pred CCCCCCCEeE
Confidence 3555555544
No 379
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=35.66 E-value=32 Score=19.39 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=23.0
Q ss_pred eEEEcCCCCCeeecC---CCCeeEcCCCCCcEE
Q 035461 8 VSYICGDCGMENTLK---PGDVIQCRECGYRIL 37 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~---~~~~irC~~CG~RIl 37 (51)
+.-.|..|+..+.+. ....-+|..|+...+
T Consensus 13 ~~~~c~~c~~~~~~~~~r~~~~~~~~~~~~~~~ 45 (155)
T 2ppt_A 13 LRLTCLACGQANKVPSDRLAAGPKCGICGAGLI 45 (155)
T ss_dssp EEEECTTTCCEEEEEGGGTTSCCBCTTTCCBSC
T ss_pred ceEECccccccccCCcccccCCCCCCcCCcccc
Confidence 468999999999875 345678888887653
No 380
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.44 E-value=18 Score=18.82 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=19.1
Q ss_pred eEEEcCCCCCeeecC--------C------CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENTLK--------P------GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~--------~------~~~irC~~CG~RI 36 (51)
..|.|..||+.|... . .....|+.||...
T Consensus 18 ~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f 60 (115)
T 2dmi_A 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60 (115)
T ss_dssp CSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCC
T ss_pred CCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCccc
Confidence 459999999988632 1 1223499998654
No 381
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=35.20 E-value=21 Score=18.68 Aligned_cols=28 Identities=32% Similarity=0.713 Sum_probs=16.9
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCCcEEEEEe
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGYRILYKKR 41 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R 41 (51)
+..-.|.+||..... ---|++|| .||-|
T Consensus 28 p~l~~c~~cGe~~~~----H~vc~~CG---~Y~gr 55 (60)
T 3v2d_5 28 PTLVPCPECKAMKPP----HTVCPECG---YYAGR 55 (60)
T ss_dssp CCCEECTTTCCEECT----TSCCTTTC---EETTE
T ss_pred CceeECCCCCCeecc----eEEcCCCC---cCCCE
Confidence 345578888875322 23488888 45543
No 382
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=34.96 E-value=18 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=18.0
Q ss_pred eEEEcCCCCCeeecC-------CCCeeEcCCCC
Q 035461 8 VSYICGDCGMENTLK-------PGDVIQCRECG 33 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-------~~~~irC~~CG 33 (51)
....|..||.....+ ....-+||.||
T Consensus 160 ~~~~C~~C~~~~~~~~~~~~~~~~~~P~Cp~C~ 192 (354)
T 2hjh_A 160 ATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 192 (354)
T ss_dssp EEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred CccccCCCCCcCCHHHHHHHhhccCCCcCcccc
Confidence 456799999876542 22345899997
No 383
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=34.95 E-value=26 Score=15.58 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=11.6
Q ss_pred eEEEcC--CCCCeeecC
Q 035461 8 VSYICG--DCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~~~ 22 (51)
..|.|. .||+.|.-.
T Consensus 17 k~~~C~~~~C~k~F~~~ 33 (47)
T 1ncs_A 17 KTFECLFPGCTKTFKRR 33 (47)
T ss_dssp TEEECCCTTCCCEECSS
T ss_pred CCeECCCCCCCCccCCH
Confidence 459995 899998754
No 384
>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A
Probab=34.78 E-value=20 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.8
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-+||..+
T Consensus 46 ~D~v~Cf~C~~~l 58 (97)
T 3d9t_A 46 NDDVKCFCCDGGL 58 (97)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEecCcCCEe
Confidence 4889999999854
No 385
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.61 E-value=13 Score=16.62 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=7.8
Q ss_pred EcCCCCCeee
Q 035461 11 ICGDCGMENT 20 (51)
Q Consensus 11 ~C~~Cg~~~~ 20 (51)
+|..||+.+-
T Consensus 5 ~C~~C~k~Vy 14 (31)
T 1zfo_A 5 NCARCGKIVY 14 (31)
T ss_dssp BCSSSCSBCC
T ss_pred cCCccCCEEe
Confidence 6888888874
No 386
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.58 E-value=14 Score=23.93 Aligned_cols=9 Identities=44% Similarity=1.125 Sum_probs=4.2
Q ss_pred cCCCCCcEE
Q 035461 29 CRECGYRIL 37 (51)
Q Consensus 29 C~~CG~RIl 37 (51)
|+.||..|.
T Consensus 245 C~~CG~~I~ 253 (271)
T 2xzf_A 245 CSRCGAEIQ 253 (271)
T ss_dssp CTTTCCBCE
T ss_pred CCCCCCEee
Confidence 444444443
No 387
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=34.52 E-value=23 Score=25.00 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=12.4
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|..||....--...+.+|..|+..
T Consensus 115 ~C~~C~~~l~g~~~qg~~C~~C~~~ 139 (674)
T 3pfq_A 115 FCDHCGSLLYGLIHQGMKCDTCMMN 139 (674)
T ss_dssp CCSSSCSCCBBSSSCEECCSSSCCC
T ss_pred CCCccccccchhhcCccccccCCcc
Confidence 4556655533222345666666543
No 388
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.45 E-value=14 Score=23.92 Aligned_cols=11 Identities=45% Similarity=0.999 Sum_probs=5.7
Q ss_pred EcCCCCCcEEE
Q 035461 28 QCRECGYRILY 38 (51)
Q Consensus 28 rC~~CG~RIly 38 (51)
-|+.||..|.-
T Consensus 242 pC~~CG~~I~~ 252 (268)
T 1k82_A 242 PCRVCGTPIVA 252 (268)
T ss_dssp BCTTTCCBCEE
T ss_pred CCCCCCCEeeE
Confidence 35555555543
No 389
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=34.00 E-value=14 Score=23.98 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=7.1
Q ss_pred eEcCCCCCcEEEEE
Q 035461 27 IQCRECGYRILYKK 40 (51)
Q Consensus 27 irC~~CG~RIlyK~ 40 (51)
--||.||..|.-.+
T Consensus 246 ~pC~~CG~~I~~~~ 259 (273)
T 3u6p_A 246 NPCKRCGTPIEKTV 259 (273)
T ss_dssp SBCTTTCCBCEEEE
T ss_pred CCCCCCCCeEEEEE
Confidence 34556665554433
No 390
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=33.16 E-value=20 Score=17.96 Aligned_cols=22 Identities=23% Similarity=0.680 Sum_probs=16.1
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCC
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECG 33 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG 33 (51)
+.|.|..|+..+ +.-.+|..|.
T Consensus 5 ~~~~Cd~C~~~i----g~R~~C~~C~ 26 (52)
T 1tot_A 5 FVYTCNECKHHV----ETRWHCTVCE 26 (52)
T ss_dssp SCEEETTTTEEE----SSEEEESSSS
T ss_pred CEEECCCCCCCC----cceEEcCCCC
Confidence 568899999873 3448888774
No 391
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=32.96 E-value=16 Score=21.26 Aligned_cols=16 Identities=31% Similarity=0.908 Sum_probs=12.5
Q ss_pred eEE-EcCCCCCeeecCC
Q 035461 8 VSY-ICGDCGMENTLKP 23 (51)
Q Consensus 8 ~~Y-~C~~Cg~~~~~~~ 23 (51)
..| +|..||+++.+.+
T Consensus 73 ~~YRvCn~CGkPI~l~A 89 (96)
T 3mhs_E 73 IQYRVCEKCGKPLALTA 89 (96)
T ss_dssp CCCEEETTTCCEECGGG
T ss_pred ccchhhhccCCceeHHH
Confidence 444 6999999998764
No 392
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.85 E-value=22 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.560 Sum_probs=11.8
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
..|.|..||+.|.-
T Consensus 24 kpy~C~~C~k~F~~ 37 (88)
T 1x6f_A 24 STYQCKHCDSKLQS 37 (88)
T ss_dssp SCEECSSSCCEESS
T ss_pred CCCcCCCCCCEeCC
Confidence 45999999999864
No 393
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=32.65 E-value=36 Score=19.82 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=14.0
Q ss_pred CCCCceEEEcCCCCCeee
Q 035461 3 PQPEPVSYICGDCGMENT 20 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~ 20 (51)
...++-.|.|..||.++-
T Consensus 7 ~~~~~G~Y~C~~Cg~pLF 24 (105)
T 3mao_A 7 NHFEPGVYVCAKCGYELF 24 (105)
T ss_dssp TCCCSEEEEETTTCCEEE
T ss_pred CCCCCEEEEcCCCCCccc
Confidence 345678899999998764
No 394
>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}
Probab=32.64 E-value=22 Score=20.68 Aligned_cols=13 Identities=31% Similarity=0.892 Sum_probs=11.1
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-.||..|
T Consensus 70 ~D~V~Cf~C~~~L 82 (111)
T 2qra_D 70 GDTVRCFSCHAAV 82 (111)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEcccCCCEe
Confidence 5889999999765
No 395
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.28 E-value=23 Score=19.91 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.6
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
.-.+|.+||+.+++.
T Consensus 82 ~HliC~~Cg~v~~~~ 96 (131)
T 2o03_A 82 HHLVCRSCGSTIEVG 96 (131)
T ss_dssp EEEEETTTCCEEEEC
T ss_pred CEEEeCCCCCEEEEC
Confidence 567899999999874
No 396
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=32.18 E-value=29 Score=23.71 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=11.2
Q ss_pred CCeeEcCCCCCcEE
Q 035461 24 GDVIQCRECGYRIL 37 (51)
Q Consensus 24 ~~~irC~~CG~RIl 37 (51)
.+.++||+||.+.+
T Consensus 285 ~~~v~Cp~cgA~y~ 298 (325)
T 3mv2_A 285 TPSVSDPLTGSKYV 298 (325)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCCccCCCCCCeec
Confidence 46799999998754
No 397
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.00 E-value=32 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=10.9
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|.-|+. . ..-+||.|+-+
T Consensus 14 ~C~vC~~--~----~kY~CPrC~~~ 32 (56)
T 2yqq_A 14 VCVICLE--K----PKYRCPACRVP 32 (56)
T ss_dssp CCTTTCS--C----CSEECTTTCCE
T ss_pred ccCcCcC--C----CeeeCCCCCCC
Confidence 3666665 1 23577777754
No 398
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=32.00 E-value=41 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=19.8
Q ss_pred eEEEcCCCCCeeecC-CCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLK-PGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~-~~~~irC~~CG~ 34 (51)
..|+|..||...... ......|+.|+.
T Consensus 4 ~~~VC~~CG~~~~~~~~~~~~~C~~C~~ 31 (436)
T 3qqc_A 4 EVWVCENCGHIALEDKRRRRVYCPVCGE 31 (436)
T ss_dssp EEEEETTTCCBCEEETTTTEEECTTTCC
T ss_pred EEEEeCCCCceeeeccccCccCCCCCCC
Confidence 468999999864322 345689999986
No 399
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.97 E-value=11 Score=19.24 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=11.9
Q ss_pred EEcCCCCCeeecC-----CCCeeEcCCCC
Q 035461 10 YICGDCGMENTLK-----PGDVIQCRECG 33 (51)
Q Consensus 10 Y~C~~Cg~~~~~~-----~~~~irC~~CG 33 (51)
+.|..|+..+... .++.+-|..|.
T Consensus 32 F~C~~C~~~L~~~~~f~~~~~~~yC~~C~ 60 (73)
T 1wig_A 32 ALCVRCGQMFAEGEEMYLQGSSIWHPACR 60 (73)
T ss_dssp SCCSSSCCCCCSSCCCEEETTEEECTTHH
T ss_pred CEeCCCCCCCCCCCeeEeeCCEEEChHHC
Confidence 3566666555411 12445666554
No 400
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=31.77 E-value=24 Score=19.30 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.0
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-.||..+
T Consensus 44 ~D~v~Cf~C~~~l 56 (85)
T 3m1d_A 44 NDKVKCFCCGLML 56 (85)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEeCCcCCEe
Confidence 5889999999764
No 401
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.56 E-value=27 Score=17.43 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=9.2
Q ss_pred eEEEcCCCCCeee
Q 035461 8 VSYICGDCGMENT 20 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~ 20 (51)
..-+|..|+..+.
T Consensus 10 ~~~~C~~C~~~I~ 22 (77)
T 1g47_A 10 ASATCERCKGGFA 22 (77)
T ss_dssp CCCBCSSSCCBCC
T ss_pred CCCCchhcCCccC
Confidence 3457888888775
No 402
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=31.48 E-value=11 Score=19.89 Aligned_cols=11 Identities=27% Similarity=0.924 Sum_probs=8.4
Q ss_pred eeEcCCCCCcE
Q 035461 26 VIQCRECGYRI 36 (51)
Q Consensus 26 ~irC~~CG~RI 36 (51)
+|||--||.-|
T Consensus 3 PVRCFTCGkvi 13 (55)
T 1ef4_A 3 PVRCLSCGKPV 13 (55)
T ss_dssp SSSCSCTTSCC
T ss_pred CeecCCCCCCh
Confidence 68888888644
No 403
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=31.36 E-value=25 Score=17.79 Aligned_cols=34 Identities=9% Similarity=-0.109 Sum_probs=23.6
Q ss_pred ceEEEcCCCCCeeecCC---C-C----eeEcCCCCCcEEEEE
Q 035461 7 PVSYICGDCGMENTLKP---G-D----VIQCRECGYRILYKK 40 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~---~-~----~irC~~CG~RIlyK~ 40 (51)
.+.-.|.+|+..+-... . + ---||.|+.-+|+|+
T Consensus 9 ~i~L~ct~c~~~~Y~t~Knr~~~rLelkKycp~~~khtlhkE 50 (52)
T 2ftc_P 9 LVRMVSEAGTGFCFNTKRNRLREKLTLLHYDPVVKQRVLFVE 50 (52)
T ss_pred EEEEEEecCCCeeEEEecCCCCceeEEEccCCCCCceEeEEe
Confidence 46778999977554321 1 1 126999999999987
No 404
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.34 E-value=12 Score=18.29 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=15.7
Q ss_pred CCCCCeeecC------CCCeeEcCCCCCcE
Q 035461 13 GDCGMENTLK------PGDVIQCRECGYRI 36 (51)
Q Consensus 13 ~~Cg~~~~~~------~~~~irC~~CG~RI 36 (51)
..||..|-.. ......||.|+..+
T Consensus 24 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCCEEHHHHHHHHHTTSSSCTTTCCCC
T ss_pred CCCCCHhHHHHHHHHHHcCCCcCCCCCCcc
Confidence 4677776532 12457899998775
No 405
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=31.25 E-value=42 Score=18.28 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=25.1
Q ss_pred CCCCCCceEEEcCCCCCeeecCCCCeeEcCCCCCcEEE
Q 035461 1 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILY 38 (51)
Q Consensus 1 ~~~~~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RIly 38 (51)
||.+.+....+|.-|+.. ..+..|.|-.-+...-|
T Consensus 9 ~NIp~~R~~l~C~iC~~~---~~GAciqC~~~~C~~~f 43 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQK---GVGASIQCHKANCYTAF 43 (87)
T ss_dssp CCCCCCCCCCCBTTTTBC---CSSCEEECSCTTTCCEE
T ss_pred cCCChHHhcCCCcCCCCC---CCcEeEecCCCCCCCcC
Confidence 788888888899999742 24677999875544444
No 406
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=31.23 E-value=27 Score=17.98 Aligned_cols=35 Identities=3% Similarity=-0.136 Sum_probs=24.7
Q ss_pred ceEEEcCCCCCeeecC----CC--Ce----eEcCCCCCcEEEEEe
Q 035461 7 PVSYICGDCGMENTLK----PG--DV----IQCRECGYRILYKKR 41 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~----~~--~~----irC~~CG~RIlyK~R 41 (51)
.+.-.|.+|+..+-.. .+ +- --||.|+..+|+|+-
T Consensus 9 ~I~L~ct~c~~~~Y~t~Knrrn~~~rLelkKycp~~~kHtlhkE~ 53 (55)
T 2zjr_1 9 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREK 53 (55)
T ss_pred EEEEEEcccCCeeEeEcccCCCCCcceEEEccCCCCCCEEeEEEe
Confidence 4678899998765432 11 11 269999999999974
No 407
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.22 E-value=26 Score=15.85 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=10.8
Q ss_pred eEEEcCC--CCCeeec
Q 035461 8 VSYICGD--CGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~--Cg~~~~~ 21 (51)
-.|.|.. ||+.|.-
T Consensus 8 kp~~C~~~~C~k~F~~ 23 (38)
T 2eln_A 8 ILLKCPTDGCDYSTPD 23 (38)
T ss_dssp CCEECSSSSCCCEESC
T ss_pred CCCCCCCCCCCCccCC
Confidence 4599985 9998864
No 408
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=31.18 E-value=24 Score=20.57 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=10.8
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
+.|.|..||..-.+.
T Consensus 88 vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 88 IVVKCLECGHIMRYP 102 (123)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEe
Confidence 778888888766554
No 409
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.14 E-value=28 Score=15.09 Aligned_cols=14 Identities=21% Similarity=0.648 Sum_probs=11.5
Q ss_pred eEEEcC--CCCCeeec
Q 035461 8 VSYICG--DCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~--~Cg~~~~~ 21 (51)
..|.|. .||+.|..
T Consensus 11 k~~~C~~~~C~k~f~~ 26 (48)
T 2ent_A 11 KPFACTWPGCGWRFSR 26 (48)
T ss_dssp CCEECCSSSCCCEESS
T ss_pred CCeECCCCCCCCccCC
Confidence 459998 89999874
No 410
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.93 E-value=65 Score=17.31 Aligned_cols=13 Identities=23% Similarity=0.710 Sum_probs=8.4
Q ss_pred EEEcCC--CCCeeec
Q 035461 9 SYICGD--CGMENTL 21 (51)
Q Consensus 9 ~Y~C~~--Cg~~~~~ 21 (51)
.|.|.. ||+.|..
T Consensus 97 ~~~C~~~~C~~~f~~ 111 (155)
T 2gli_A 97 PYMCEHEGCSKAFSN 111 (155)
T ss_dssp CEECCSTTCCCEESS
T ss_pred CeeCCCCCCCCccCC
Confidence 477776 7776653
No 411
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=30.90 E-value=40 Score=19.31 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=19.4
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCCcE
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGYRI 36 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~RI 36 (51)
.+..+.=..||.++. ....|.+||..|
T Consensus 110 ~~~~~~~~~~g~~~~----~~~~~~~~g~~~ 136 (146)
T 2f2e_A 110 SHVRLVERDSGQPVP----RLQVRAGDGSPL 136 (146)
T ss_dssp CCCEEEETTTCCBCC----CCCCBCTTSCBC
T ss_pred CcceeeeCCCCCCCC----ceEEECCCcCCC
Confidence 346777788888764 347888998754
No 412
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=30.72 E-value=19 Score=20.91 Aligned_cols=26 Identities=27% Similarity=0.698 Sum_probs=17.0
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.--+|-.||...-- .+-..|-.|||.
T Consensus 15 tH~lCrRCG~~sfH--~qK~~CgkCGYp 40 (97)
T 2zkr_2 15 THTLCRRCGSKAYH--LQKSTCGKCGYP 40 (97)
T ss_dssp CEECCTTTCSSCEE--TTSCCBTTTCTT
T ss_pred CCCcCCCCCCccCc--CccccCcccCCc
Confidence 44578888876442 245678888875
No 413
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.46 E-value=24 Score=24.00 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=10.8
Q ss_pred CCeeEcCCCCCcEE
Q 035461 24 GDVIQCRECGYRIL 37 (51)
Q Consensus 24 ~~~irC~~CG~RIl 37 (51)
.+.++||+||.+.+
T Consensus 276 ~~~v~Cp~cgA~y~ 289 (320)
T 3mkr_B 276 KPVEKCPLSGACYS 289 (320)
T ss_dssp SCCEECTTTCCEEC
T ss_pred CCCccCCCCCCeec
Confidence 36699999998753
No 414
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=30.16 E-value=21 Score=20.21 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.1
Q ss_pred eEEEcCCCCCeeec
Q 035461 8 VSYICGDCGMENTL 21 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~ 21 (51)
-.-+|.+||+.|..
T Consensus 20 d~iiClecGK~fK~ 33 (87)
T 2jsp_A 20 DHIVCLECGGSFKS 33 (87)
T ss_dssp SCEECTBTCCEESB
T ss_pred CceEecccchhhHH
Confidence 45689999998863
No 415
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.06 E-value=24 Score=16.13 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=13.5
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.+|..||..+-... ..|-.||.
T Consensus 7 W~C~~C~~~Nfa~R---~~C~~C~~ 28 (33)
T 2k1p_A 7 WQCKTCSNVNWARR---SECNMCNT 28 (33)
T ss_dssp CBCSSSCCBCCTTC---SBCSSSCC
T ss_pred cccCCCCCcccccc---ccccccCC
Confidence 46778877765543 45656653
No 416
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.98 E-value=2.3 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=15.7
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
...+|..|++.+.|......+| .||.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~ 39 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGY 39 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSC
T ss_pred cCCcchhhCCeecccccCceEe-cCCC
Confidence 4457888888776542123567 6664
No 417
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=29.74 E-value=6.3 Score=21.16 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=18.8
Q ss_pred eEEEcCCCCCeeecC----CCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLK----PGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~----~~~~irC~~CG~ 34 (51)
..-.|..||...... ....+-|.-||-
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl 38 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQPLCNACGL 38 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTEEECHHHHH
T ss_pred CCCCCCCCCCCCCCcCCcCCCCCCccHHHHH
Confidence 345799999887765 234577888873
No 418
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=29.39 E-value=18 Score=18.25 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=15.0
Q ss_pred CCceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 5 PEPVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
+......|..||.. ...+|..|..
T Consensus 9 ~~~~~~~C~~C~~~------~~~~Cs~C~~ 32 (60)
T 2od1_A 9 NSDSSESCWNCGRK------ASETCSGCNT 32 (60)
T ss_dssp --CCSSCCTTTSSC------CCEECTTTSC
T ss_pred CCCCCCccccCCCc------ccccCCCCCC
Confidence 33345678899883 3478877763
No 419
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=29.10 E-value=9 Score=19.20 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=16.9
Q ss_pred EcCCCCCeeecC----CCCeeEcCCCCC
Q 035461 11 ICGDCGMENTLK----PGDVIQCRECGY 34 (51)
Q Consensus 11 ~C~~Cg~~~~~~----~~~~irC~~CG~ 34 (51)
.|..||...... +.+..-|.-||-
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 589999887764 224477888874
No 420
>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A
Probab=29.07 E-value=28 Score=19.35 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=11.6
Q ss_pred CCCeeEcCCCCCcE
Q 035461 23 PGDVIQCRECGYRI 36 (51)
Q Consensus 23 ~~~~irC~~CG~RI 36 (51)
.+|.++|-.||..+
T Consensus 43 ~~D~v~Cf~C~~~l 56 (95)
T 3hl5_A 43 EGDKVKCFHCGGGL 56 (95)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCeEEecCCCCCc
Confidence 35889999999765
No 421
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=28.94 E-value=16 Score=20.05 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=8.7
Q ss_pred CeeEcCCCCCcE
Q 035461 25 DVIQCRECGYRI 36 (51)
Q Consensus 25 ~~irC~~CG~RI 36 (51)
-+|||--||.-|
T Consensus 3 iPVRCFTCGkvi 14 (70)
T 1twf_J 3 VPVRCFSCGKVV 14 (70)
T ss_dssp CCSBCTTTCCBC
T ss_pred CCeecCCCCCCh
Confidence 368888888644
No 422
>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A
Probab=28.87 E-value=27 Score=20.40 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=11.4
Q ss_pred CCCeeEcCCCCCcE
Q 035461 23 PGDVIQCRECGYRI 36 (51)
Q Consensus 23 ~~~~irC~~CG~RI 36 (51)
.+|.++|-+||..+
T Consensus 57 ~~D~V~Cf~C~~~L 70 (121)
T 1g73_C 57 EGDKVKCFHCGGGL 70 (121)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEcCcCCCCc
Confidence 35789999999765
No 423
>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}
Probab=28.86 E-value=28 Score=19.85 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=11.0
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-.||..+
T Consensus 54 ~D~V~Cf~C~~~L 66 (106)
T 2vm5_A 54 QDTVQCFSCGGCL 66 (106)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEccccCCEe
Confidence 5889999999765
No 424
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.26 E-value=41 Score=16.43 Aligned_cols=12 Identities=17% Similarity=0.609 Sum_probs=8.1
Q ss_pred CeeEcCCCCCcE
Q 035461 25 DVIQCRECGYRI 36 (51)
Q Consensus 25 ~~irC~~CG~RI 36 (51)
....||.|...|
T Consensus 56 ~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 56 GFFKCPLCKTSV 67 (73)
T ss_dssp SCCCCSSSCCCC
T ss_pred CCCCCCCCCCcC
Confidence 456788887654
No 425
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.20 E-value=61 Score=16.91 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=19.9
Q ss_pred CCCCceEEEcCCCCCeeecC-----------CC--CeeEcCC--CCCc
Q 035461 3 PQPEPVSYICGDCGMENTLK-----------PG--DVIQCRE--CGYR 35 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~-----------~~--~~irC~~--CG~R 35 (51)
....+..+.-..||..|=.. .+ ..++||. |...
T Consensus 14 ~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 14 EYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred ccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 33445555555677776531 12 4699999 7755
No 426
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=28.17 E-value=40 Score=16.93 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=10.0
Q ss_pred eeEcCCCCCcEEE
Q 035461 26 VIQCRECGYRILY 38 (51)
Q Consensus 26 ~irC~~CG~RIly 38 (51)
...|.+||..|.-
T Consensus 18 ~~~C~~CG~~i~~ 30 (49)
T 2l8e_A 18 LLKCEYCGKYAPA 30 (49)
T ss_dssp EEECTTTCCEEEG
T ss_pred CCcChhccCcccc
Confidence 3569999988874
No 427
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=28.14 E-value=29 Score=20.50 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=11.3
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-+||..|
T Consensus 58 ~D~V~Cf~C~~~L 70 (124)
T 1jd5_A 58 GDRVRCFSCGGGL 70 (124)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEecCCCCEe
Confidence 5889999999866
No 428
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=27.86 E-value=27 Score=17.97 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=25.1
Q ss_pred ceEEEcCCCCCeeecC----CC------CeeEcCCCCCcEEEEEe
Q 035461 7 PVSYICGDCGMENTLK----PG------DVIQCRECGYRILYKKR 41 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~----~~------~~irC~~CG~RIlyK~R 41 (51)
.+.-.|.+|+..+=.. .+ ----||.|+.-.|+|+-
T Consensus 8 ~I~L~ct~c~~~nY~T~KNkrn~p~rLelkKycp~c~kHtlhkE~ 52 (54)
T 3v2d_6 8 KLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHREV 52 (54)
T ss_dssp EEEEEETTTCCEEEEEEEETTTSCSCCEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEeCCCCccEeEeecCCCCCcccEEeeeCCCCCCEeeEEEe
Confidence 4778899998766442 11 12469999999999873
No 429
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=27.78 E-value=45 Score=17.59 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=15.7
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.-=+|-+||...--. ....|-.|||
T Consensus 16 tH~~CrRCG~~syH~--qK~~Ca~CGy 40 (57)
T 1vq8_1 16 THTKCRRCGEKSYHT--KKKVCSSCGF 40 (57)
T ss_dssp CEEECTTTCSEEEET--TTTEETTTCT
T ss_pred ccccccccCChhhhc--cccccccccC
Confidence 445778887764322 2367888887
No 430
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=27.59 E-value=8.7 Score=18.97 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=17.6
Q ss_pred EcCCCCCeeecC----CCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLK----PGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~----~~~~irC~~CG~R 35 (51)
.|..|+...... ..+..-|.-||-+
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHH
Confidence 488999887654 2345788888855
No 431
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.55 E-value=24 Score=17.97 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=6.8
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
-+|..|+..+.
T Consensus 8 ~~C~~C~~~I~ 18 (81)
T 1a7i_A 8 NKCGACGRTVY 18 (81)
T ss_dssp CBCSSSCCBCS
T ss_pred CcCcCcCcccc
Confidence 35777776653
No 432
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=27.39 E-value=31 Score=18.20 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=11.0
Q ss_pred EcCCCCCe--eecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGME--NTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~--~~~~~~~~irC~~CG~R 35 (51)
+|.-|+.. ... .-+||.||-|
T Consensus 13 ~C~vC~~~~~~~a----kY~CPrC~~r 35 (59)
T 1x4s_A 13 PCGFCPAGEVQPA----RYTCPRCNAP 35 (59)
T ss_dssp EECSSCTTCCEEE----CEECTTTCCE
T ss_pred cCcCCCCCcCCCc----cccCcCCCCC
Confidence 56666641 222 2566666644
No 433
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=27.30 E-value=35 Score=20.45 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=13.3
Q ss_pred CCCceEEEcCCCCCeee
Q 035461 4 QPEPVSYICGDCGMENT 20 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~ 20 (51)
..++-.|.|..||.++-
T Consensus 15 ~~~~GiY~C~~Cg~pLF 31 (124)
T 2kao_A 15 HFEPGVYVCAKCSYELF 31 (124)
T ss_dssp CCCCCEEEESSSCCCCC
T ss_pred CCCCEEEEeCCCCCccc
Confidence 44678899999988754
No 434
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.11 E-value=36 Score=17.63 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=18.7
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcC-CCCC
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCR-ECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~-~CG~ 34 (51)
....|.|+.|+.+.... ...|.|- .|..
T Consensus 5 ~~~~~~C~~C~~p~~~~-~~mI~CD~~C~~ 33 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDD-QDAILCEASCQK 33 (65)
T ss_dssp ----CBCTTTCSBCCTT-SCEEEBTTTTCC
T ss_pred CCCcCcCccCCCccCCC-CCeEecccCccc
Confidence 34678999999986543 3679998 7864
No 435
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=27.08 E-value=31 Score=20.02 Aligned_cols=14 Identities=43% Similarity=0.959 Sum_probs=11.5
Q ss_pred CCCeeEcCCCCCcE
Q 035461 23 PGDVIQCRECGYRI 36 (51)
Q Consensus 23 ~~~~irC~~CG~RI 36 (51)
.+|.++|-+||..+
T Consensus 45 ~~D~V~Cf~C~~~L 58 (116)
T 1se0_A 45 AGDKVKCFFCGVEI 58 (116)
T ss_dssp STTCEEETTTCCEE
T ss_pred CCCEEEecCcCCEe
Confidence 35889999999865
No 436
>2yrt_A Chord containing protein-1; CHP1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.97 E-value=32 Score=18.88 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=19.3
Q ss_pred CceEEEcCC--CCCeeecCCCCeeEcC
Q 035461 6 EPVSYICGD--CGMENTLKPGDVIQCR 30 (51)
Q Consensus 6 ~~~~Y~C~~--Cg~~~~~~~~~~irC~ 30 (51)
+.|...|.+ ||+.+....+..-.|.
T Consensus 6 ~~m~~~C~n~GC~~~f~~~~n~~~~C~ 32 (75)
T 2yrt_A 6 SGMALLCYNRGCGQRFDPETNSDDACT 32 (75)
T ss_dssp CSCCEECCSTTTCCEECTTTCCTTTBC
T ss_pred CcCccccCCCCCCCEecCCCCCCCCeE
Confidence 457789998 9999987766555676
No 437
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.95 E-value=27 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=7.1
Q ss_pred EEcCCCCCeee
Q 035461 10 YICGDCGMENT 20 (51)
Q Consensus 10 Y~C~~Cg~~~~ 20 (51)
-+|..|+..+.
T Consensus 16 ~~C~~C~~~I~ 26 (82)
T 2co8_A 16 DLCALCGEHLY 26 (82)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCCcc
Confidence 45777777663
No 438
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=26.91 E-value=37 Score=16.16 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=13.4
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
...-.|..||.. ...+|..|..
T Consensus 7 ~~~~~C~~C~~~------~~~~C~~C~~ 28 (52)
T 2jw6_A 7 RKEQSCVNCGRE------AMSECTGCHK 28 (52)
T ss_dssp ----CCSSSSSS------CSEECTTTCS
T ss_pred ccCCcCCCCCCC------CcCcCCCCCC
Confidence 345679999884 3578887763
No 439
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=26.69 E-value=21 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=19.3
Q ss_pred CceEEEcCCCCCeeecCC--CCeeEcCCCCCc
Q 035461 6 EPVSYICGDCGMENTLKP--GDVIQCRECGYR 35 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~--~~~irC~~CG~R 35 (51)
+...-+|.+|+..+-.+. ...-.||.|+|+
T Consensus 27 ~~l~~kc~~~~~~~y~~~l~~~~~v~p~~~~~ 58 (285)
T 2f9i_B 27 AGIMTKCPKCKKIMYTKELAENLNVCFNCDHH 58 (285)
T ss_dssp CSSEEECTTTCCEEEHHHHHHTTTBCTTTCCB
T ss_pred hHHHHhhHhhCCccchhhhHHhcCcCCCCCCC
Confidence 345678888888766542 123578888874
No 440
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.66 E-value=16 Score=18.93 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.0
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
+.|.|..|+..+.+.
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 778899999888753
No 441
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=26.51 E-value=35 Score=17.05 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=15.5
Q ss_pred CceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 6 EPVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
++..-.|..|+.. ...+|..|..
T Consensus 12 ~~~~~~C~~C~~~------~~~~Cs~C~~ 34 (60)
T 2dj8_A 12 EDSSESCWNCGRK------ASETCSGCNT 34 (60)
T ss_dssp CCCSCCCSSSCSC------CCEECTTTSC
T ss_pred CCCCcccccCCCC------CcccCCCCCC
Confidence 3445678899873 3578887764
No 442
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=26.50 E-value=42 Score=16.91 Aligned_cols=28 Identities=14% Similarity=0.513 Sum_probs=17.7
Q ss_pred CCceEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 5 PEPVSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.....-.|..|+-.=... ...|+.|+..
T Consensus 5 ~~~~~~~C~~C~GsG~~~---~~~C~~C~G~ 32 (53)
T 2bx9_A 5 TDDLEVACPKCERAGEIE---GTPCPACSGK 32 (53)
T ss_dssp HHHHEEECTTTTTSSEET---TEECTTTTTS
T ss_pred cCCccccCCCCcceeccC---CCCCccCCCC
Confidence 344556788885443332 3789999865
No 443
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=26.15 E-value=51 Score=20.11 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.3
Q ss_pred CCCceEEEcCCCCCeee
Q 035461 4 QPEPVSYICGDCGMENT 20 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~ 20 (51)
..++-.|.|..||.++-
T Consensus 32 ~~~~G~Y~C~~Cg~pLF 48 (143)
T 2l1u_A 32 NKETGMYHCVCCDSPLF 48 (143)
T ss_dssp CCCCEEEEESSSSCEEE
T ss_pred CcCCeEEEeCCCCCeee
Confidence 34668899999988764
No 444
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=26.12 E-value=29 Score=20.79 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=17.3
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCC
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECG 33 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG 33 (51)
.+.|..|+....... ...+|++|.
T Consensus 2 ~~~Cp~C~~~~~~~~-~~~~C~~~~ 25 (269)
T 1p91_A 2 SFSCPLCHQPLSREK-NSYICPQRH 25 (269)
T ss_dssp CBBCTTTCCBCEEET-TEEECTTCC
T ss_pred cccCCCCCccceeCC-CEEECCCCC
Confidence 367999988765543 568998875
No 445
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10 E-value=27 Score=17.74 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=6.0
Q ss_pred EcCCCCCeee
Q 035461 11 ICGDCGMENT 20 (51)
Q Consensus 11 ~C~~Cg~~~~ 20 (51)
+|+.|+..+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 4666666554
No 446
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=25.95 E-value=38 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=13.2
Q ss_pred eEEEcCCCCCeeecC
Q 035461 8 VSYICGDCGMENTLK 22 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~ 22 (51)
-.|+|-.||+-++++
T Consensus 153 QFYKCe~CgKYvDId 167 (226)
T 2czr_A 153 QFYKCEECGKYVDIE 167 (226)
T ss_dssp EEEECTTTCCEEEGG
T ss_pred EEEehhhcCceecHH
Confidence 369999999999986
No 447
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=25.88 E-value=36 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=13.4
Q ss_pred eEcCCCCCcEEEEEec
Q 035461 27 IQCRECGYRILYKKRT 42 (51)
Q Consensus 27 irC~~CG~RIlyK~R~ 42 (51)
.-|+.||..+.+....
T Consensus 99 ~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 99 HRCRDCGVHMYGRIEN 114 (196)
T ss_dssp EEETTTCCEEEEEECC
T ss_pred EECCCCCCcCCccccc
Confidence 5699999999987664
No 448
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.81 E-value=49 Score=17.99 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=11.0
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.|..|+-.=.........|+.|+..
T Consensus 30 ~C~~C~G~G~~~g~~~~~C~~C~G~ 54 (104)
T 2ctt_A 30 TCERCNGKGNEPGTKVQHCHYCGGS 54 (104)
T ss_dssp ECSSSSSSSSCTTCCCEECSSSSSS
T ss_pred ECCCCcCCccCCCCCCccCCCCCCC
Confidence 5666633211111134566666544
No 449
>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...
Probab=25.73 E-value=33 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.5
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
.|.++|-+||..+
T Consensus 52 ~D~V~Cf~C~~~L 64 (142)
T 2qfa_A 52 PDLAQCFFCFKEL 64 (142)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEcCCCCCEe
Confidence 4789999999754
No 450
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.55 E-value=4.8 Score=24.07 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 7 PVSYICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
.-.--|..|+.....+.-..--||+||.
T Consensus 14 r~lrAC~~C~~V~t~~qF~~~gCpnC~~ 41 (120)
T 3h7h_A 14 RHLRACLLCSLVKTIDQFEYDGCDNCDA 41 (120)
T ss_dssp TTEEEETTTCBEEEHHHHHHHCCTTTHH
T ss_pred ccCeeeccCCceechhhccCCCCCCCcc
Confidence 3567899999987655312246999983
No 451
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.42 E-value=16 Score=18.97 Aligned_cols=29 Identities=17% Similarity=0.552 Sum_probs=21.6
Q ss_pred eEEEcCCCCCeee-cC-----------C-CCeeEcCCCCCcE
Q 035461 8 VSYICGDCGMENT-LK-----------P-GDVIQCRECGYRI 36 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~-~~-----------~-~~~irC~~CG~RI 36 (51)
..|.|..||+.|. .. . ..+..|+.||...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F 64 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQF 64 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred CCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCcc
Confidence 4599999999997 32 1 2357899999764
No 452
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=25.18 E-value=56 Score=19.99 Aligned_cols=18 Identities=17% Similarity=-0.055 Sum_probs=14.2
Q ss_pred CCCceEEEcCCCCCeeec
Q 035461 4 QPEPVSYICGDCGMENTL 21 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~~ 21 (51)
..++-.|.|..||.++-.
T Consensus 37 ~~~~G~Y~C~~Cg~pLF~ 54 (144)
T 3e0o_A 37 HKEEGLYVDIVSGKPLFT 54 (144)
T ss_dssp CCCSEEEEETTTCCEEEE
T ss_pred cCCCEEEEeCCCCccccc
Confidence 446688999999988654
No 453
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=25.16 E-value=54 Score=20.50 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.1
Q ss_pred CCCceEEEcCCCCCeeec
Q 035461 4 QPEPVSYICGDCGMENTL 21 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~~ 21 (51)
..++-.|.|..||.++-.
T Consensus 68 ~~~~GiY~C~~Cg~pLF~ 85 (164)
T 3cxk_A 68 TEDAGIYHCVVCGTALFE 85 (164)
T ss_dssp CCCSEEEEETTTCCEEEE
T ss_pred cCCCeEEEccCCCccccC
Confidence 346689999999988653
No 454
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.13 E-value=66 Score=18.48 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=13.7
Q ss_pred CCCCeeecCC-CCeeEcC-CCCCcE
Q 035461 14 DCGMENTLKP-GDVIQCR-ECGYRI 36 (51)
Q Consensus 14 ~Cg~~~~~~~-~~~irC~-~CG~RI 36 (51)
+|....+... =.+|.|| .||-.|
T Consensus 24 ~C~~~~~~~~~C~~i~CP~~Cga~i 48 (100)
T 2yre_A 24 RCMTRPEPGISCDLIGCPLVCGAVF 48 (100)
T ss_dssp TCCCCCCTTTCCCEEECTTCCSCEE
T ss_pred ccCCCCCCCCeeeeeeCCcccCCee
Confidence 3444443332 2689999 899833
No 455
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=24.99 E-value=27 Score=17.67 Aligned_cols=35 Identities=9% Similarity=-0.058 Sum_probs=24.3
Q ss_pred CceEEEcCCCCCeeecC----------CCCeeEcCCCCCcEEEEE
Q 035461 6 EPVSYICGDCGMENTLK----------PGDVIQCRECGYRILYKK 40 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~----------~~~~irC~~CG~RIlyK~ 40 (51)
..+.-.|.+|+..+-.. ..-.--||.|+..+|+|+
T Consensus 4 ~~I~L~ct~c~~~nY~t~kn~~~~~~rLelkKycp~~~khtlhkE 48 (50)
T 3r8s_1 4 EKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKE 48 (50)
T ss_dssp EEEEEEESSSSCCEEEEEECGGGCCSCCCEEEEETTTTEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEEccCCCCCccceEeeeCcCCCCEeeEEE
Confidence 34677899997665431 112357999999999986
No 456
>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*
Probab=24.70 E-value=36 Score=19.93 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=11.2
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.++|-.||..+
T Consensus 52 ~D~V~Cf~C~~~L 64 (122)
T 3mup_A 52 NDDVKCFCCDGGL 64 (122)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCeEEecCcCCEe
Confidence 5889999999865
No 457
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.22 E-value=92 Score=17.13 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=20.3
Q ss_pred ceEEEcCC--CCCeeecCCCCeeEcCCCCCcEEEE
Q 035461 7 PVSYICGD--CGMENTLKPGDVIQCRECGYRILYK 39 (51)
Q Consensus 7 ~~~Y~C~~--Cg~~~~~~~~~~irC~~CG~RIlyK 39 (51)
...+.|.- |+.. ++ -++.|+.||...=-+
T Consensus 23 ~~~~~C~~~~Ck~~-~~---l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 23 HKSYSCSFKGCTDV-EL---VAVICPYCEKNFCLR 53 (86)
T ss_dssp SCCEECCSTTCCCE-ES---SCEECTTTCCEECGG
T ss_pred CCCCCCCCcCCCCC-Cc---cceECCCCCcccccc
Confidence 35688987 9887 33 468999998765333
No 458
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=24.11 E-value=37 Score=20.49 Aligned_cols=15 Identities=40% Similarity=0.797 Sum_probs=12.0
Q ss_pred CCCeeEcCCCCCcEE
Q 035461 23 PGDVIQCRECGYRIL 37 (51)
Q Consensus 23 ~~~~irC~~CG~RIl 37 (51)
.+|.++|-.||..+-
T Consensus 67 ~~D~V~Cf~C~~~L~ 81 (136)
T 3siq_A 67 AGDKVKCFFCGVEIG 81 (136)
T ss_dssp STTCEEETTTCCEEE
T ss_pred CCCeEEEeccCCEec
Confidence 358899999998753
No 459
>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*
Probab=24.07 E-value=37 Score=20.31 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=11.1
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.|+|-.||..+
T Consensus 80 ~D~V~Cf~C~~~L 92 (133)
T 2i3h_A 80 QDKVRCFFCYGGL 92 (133)
T ss_dssp TTCEEETTTCCEE
T ss_pred CCEEEecccCCEe
Confidence 5889999999765
No 460
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=24.07 E-value=16 Score=24.03 Aligned_cols=24 Identities=29% Similarity=0.812 Sum_probs=0.0
Q ss_pred EEEcCCCCCeeecCCCCeeEcCCCC
Q 035461 9 SYICGDCGMENTLKPGDVIQCRECG 33 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~~~~~~irC~~CG 33 (51)
.-.|..|+..|.+-. ..-.|..||
T Consensus 375 ~~~c~~c~~~f~~~~-r~h~Cr~Cg 398 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTL-RRHHCHACG 398 (434)
T ss_dssp -------------------------
T ss_pred CCcCCCcCCCCCCcc-hhhhcccCc
Confidence 356899999887643 234555555
No 461
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=21 Score=17.47 Aligned_cols=11 Identities=27% Similarity=0.757 Sum_probs=6.3
Q ss_pred EEEcCCCCCee
Q 035461 9 SYICGDCGMEN 19 (51)
Q Consensus 9 ~Y~C~~Cg~~~ 19 (51)
.+.|.-|...+
T Consensus 15 ~~~C~IC~~~~ 25 (66)
T 2ecy_A 15 KYKCEKCHLVL 25 (66)
T ss_dssp CEECTTTCCEE
T ss_pred CCCCCCCChHh
Confidence 46666665444
No 462
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.65 E-value=20 Score=22.41 Aligned_cols=29 Identities=31% Similarity=0.740 Sum_probs=17.6
Q ss_pred EcCCCCCeee---c--C-CCCeeEcCCCCCcEEEE
Q 035461 11 ICGDCGMENT---L--K-PGDVIQCRECGYRILYK 39 (51)
Q Consensus 11 ~C~~Cg~~~~---~--~-~~~~irC~~CG~RIlyK 39 (51)
+|..|+..-. . + ..-.++|.-||++--..
T Consensus 98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 98 LCPECENPETDLHVNPKKQTIGNSCKACGYRGMLD 132 (170)
T ss_dssp SCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCSC
T ss_pred ECCCCCCCccEEEEecCCCEEEEEccccCCccccc
Confidence 5888876533 2 1 12358899999764433
No 463
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=4.6 Score=20.36 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=5.7
Q ss_pred EcCCCCCeee
Q 035461 11 ICGDCGMENT 20 (51)
Q Consensus 11 ~C~~Cg~~~~ 20 (51)
+|..|+..+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 4666665554
No 464
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=23.49 E-value=51 Score=20.19 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=14.0
Q ss_pred CCCceEEEcCCCCCeeec
Q 035461 4 QPEPVSYICGDCGMENTL 21 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~~ 21 (51)
..++-.|.|..||.++-.
T Consensus 38 ~~~~G~Y~C~~Cg~pLF~ 55 (146)
T 3hcg_A 38 LFKPGIYVDVVSGEPLFS 55 (146)
T ss_dssp CCCSEEEEETTTCCEEEE
T ss_pred CCCCEEEEecCCCccccc
Confidence 346788999999988653
No 465
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=23.39 E-value=61 Score=20.04 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.5
Q ss_pred CCCceEEEcCCCCCeee
Q 035461 4 QPEPVSYICGDCGMENT 20 (51)
Q Consensus 4 ~~~~~~Y~C~~Cg~~~~ 20 (51)
..++-.|.|..||.++-
T Consensus 45 ~~~~G~Y~C~~Cg~pLF 61 (154)
T 3hcj_A 45 NKLDGVYTCRLCGLPLF 61 (154)
T ss_dssp SCSSEEEEETTTCCEEE
T ss_pred CCCCEEEEccCCCCccc
Confidence 45668899999998764
No 466
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=23.13 E-value=33 Score=25.35 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=12.0
Q ss_pred EcCCCCCeeecCCCCeeEcCC
Q 035461 11 ICGDCGMENTLKPGDVIQCRE 31 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~ 31 (51)
.|..||.++ .+....+||++
T Consensus 405 ~CP~Cgs~l-~~g~~~~~C~n 424 (667)
T 1dgs_A 405 ACPECGHRL-VKEGKVHRCPN 424 (667)
T ss_dssp BCTTTCCBC-EEETTEEECCC
T ss_pred CCCCCCCCc-cCCCeEEEeCC
Confidence 577777776 33234567765
No 467
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.97 E-value=24 Score=20.22 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=9.4
Q ss_pred eeEcCCCCCcEEEE
Q 035461 26 VIQCRECGYRILYK 39 (51)
Q Consensus 26 ~irC~~CG~RIlyK 39 (51)
-++|.+||+..+-.
T Consensus 68 rl~C~eC~~~~~~~ 81 (94)
T 3j21_j 68 RFRCTECGKAHTRG 81 (94)
T ss_dssp CEEESSSCCEECCC
T ss_pred EEEecccCccceec
Confidence 46777777766654
No 468
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=22.93 E-value=50 Score=16.50 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.3
Q ss_pred eeEcCCCCCcE
Q 035461 26 VIQCRECGYRI 36 (51)
Q Consensus 26 ~irC~~CG~RI 36 (51)
...||.|...+
T Consensus 52 ~~~CP~Cr~~~ 62 (74)
T 2yur_A 52 EHTCPTCHQND 62 (74)
T ss_dssp SSCCSSSCCSS
T ss_pred CCcCCCCCCcC
Confidence 35788887653
No 469
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=22.76 E-value=46 Score=19.92 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=12.7
Q ss_pred CCceEEEcCCCCCeee
Q 035461 5 PEPVSYICGDCGMENT 20 (51)
Q Consensus 5 ~~~~~Y~C~~Cg~~~~ 20 (51)
-++-.|.|..||.++-
T Consensus 16 ~e~G~Y~C~~Cg~pLF 31 (124)
T 2kv1_A 16 FEPGVYVCAKCSYELF 31 (124)
T ss_dssp TCCEEEEETTTCCBCC
T ss_pred CCCEEEEecCCCCccc
Confidence 3667899999988754
No 470
>2h7z_B Irditoxin subunit B; three-finger toxin, neurotoxin, snake venom; 1.50A {Boiga irregularis} SCOP: g.7.1.1
Probab=22.75 E-value=91 Score=16.43 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.3
Q ss_pred EcCCCCCeeecCCCCeeEcCCCCCcEEEEEec
Q 035461 11 ICGDCGMENTLKPGDVIQCRECGYRILYKKRT 42 (51)
Q Consensus 11 ~C~~Cg~~~~~~~~~~irC~~CG~RIlyK~R~ 42 (51)
.|-.|....+........||. |..+=||+..
T Consensus 9 ~C~~C~~~~s~~c~~~~tCp~-g~~~Cyk~~~ 39 (77)
T 2h7z_B 9 LCFECNRETCSNCFKDNRCPP-YHRTCYTLYR 39 (77)
T ss_dssp EECCEETTTCCSCSSCEECCT-TCCEEEEEEE
T ss_pred ccccCCCCccCCCccCcCcCC-CcCEEeEEEE
Confidence 788887765555456788998 7777788753
No 471
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=22.69 E-value=26 Score=19.74 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=9.2
Q ss_pred CeeEcCCCCCcE
Q 035461 25 DVIQCRECGYRI 36 (51)
Q Consensus 25 ~~irC~~CG~RI 36 (51)
+.-+|++||..+
T Consensus 34 ~~~~C~yCg~~~ 45 (112)
T 2qgp_A 34 ARGICHYCGEIF 45 (112)
T ss_dssp HHTBCTTTCCBC
T ss_pred cCCcCCCCCCcC
Confidence 345899999775
No 472
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.67 E-value=1.1e+02 Score=16.96 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCCceEEEcCCCCCeeecCC------CCeeEcCCCCCc
Q 035461 3 PQPEPVSYICGDCGMENTLKP------GDVIQCRECGYR 35 (51)
Q Consensus 3 ~~~~~~~Y~C~~Cg~~~~~~~------~~~irC~~CG~R 35 (51)
........+|.-|...+.+.. ...-.|-.||-+
T Consensus 11 ~~~~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 11 SADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp ----CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCB
T ss_pred ccccccceECccccccCcCccccCCCCCCCCcccccCcc
Confidence 344457889999998777653 245678889854
No 473
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.64 E-value=4.3 Score=21.01 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=6.3
Q ss_pred EcCCCCCeee
Q 035461 11 ICGDCGMENT 20 (51)
Q Consensus 11 ~C~~Cg~~~~ 20 (51)
+|..|+..+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1v6g_A 17 RCFSCDQFIE 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccccCEec
Confidence 5666666554
No 474
>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A
Probab=22.54 E-value=38 Score=20.37 Aligned_cols=13 Identities=46% Similarity=1.037 Sum_probs=11.0
Q ss_pred CCeeEcCCCCCcE
Q 035461 24 GDVIQCRECGYRI 36 (51)
Q Consensus 24 ~~~irC~~CG~RI 36 (51)
+|.|+|-+||..|
T Consensus 76 ~D~V~Cf~C~~~L 88 (141)
T 1i4o_C 76 GDQVQCFCCGGKL 88 (141)
T ss_pred CCEEEeccCCCEe
Confidence 5889999999765
No 475
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1
Probab=22.24 E-value=10 Score=26.84 Aligned_cols=33 Identities=6% Similarity=-0.026 Sum_probs=22.2
Q ss_pred CCceEEEcCC-CC-CeeecCCCCeeEcCCCCCcEE
Q 035461 5 PEPVSYICGD-CG-MENTLKPGDVIQCRECGYRIL 37 (51)
Q Consensus 5 ~~~~~Y~C~~-Cg-~~~~~~~~~~irC~~CG~RIl 37 (51)
++.|.|+|.+ |+ ..++++.--.-.|+.||.-.+
T Consensus 3 ~~~M~y~str~~~~~~~~~~~a~l~g~a~dGGl~~ 37 (514)
T 1kl7_A 3 NASQVYRSTRSSSPKTISFEEAIIQGLATDGGLFI 37 (514)
T ss_dssp CTTSCBEETTCCSSCCBCHHHHHHHCSCTTSCCEE
T ss_pred CcCeEEEecCCCCCCccCHHHHHHhCCcCCCCeee
Confidence 3558899997 99 777654222346778987554
No 476
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.80 E-value=47 Score=17.79 Aligned_cols=23 Identities=26% Similarity=0.618 Sum_probs=13.4
Q ss_pred EEcCCCCCeeecCCCCeeEcCCCCC
Q 035461 10 YICGDCGMENTLKPGDVIQCRECGY 34 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~~~~irC~~CG~ 34 (51)
=+|-+||...--. ..-+|-.|||
T Consensus 18 ~lCrRCG~~syH~--qK~~Ca~CGy 40 (62)
T 3j21_e 18 IRCRRCGRVSYNV--KKGYCAACGF 40 (62)
T ss_dssp CBCSSSCSBCEET--TTTEETTTCT
T ss_pred eeecccCcchhcc--ccccccccCC
Confidence 3577777653221 3357777777
No 477
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=21.74 E-value=74 Score=17.39 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEcCCCCCeeecCC-CCeeEcCCCCCcE
Q 035461 10 YICGDCGMENTLKP-GDVIQCRECGYRI 36 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~-~~~irC~~CG~RI 36 (51)
.+|.-|++...... ....||.-|+.-|
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~V 66 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMV 66 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEE
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhH
Confidence 57888988866443 4779999997543
No 478
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=21.53 E-value=78 Score=18.22 Aligned_cols=26 Identities=31% Similarity=0.857 Sum_probs=16.9
Q ss_pred eEEEcCCCCCeeecCCCCeeEcCCCCCc
Q 035461 8 VSYICGDCGMENTLKPGDVIQCRECGYR 35 (51)
Q Consensus 8 ~~Y~C~~Cg~~~~~~~~~~irC~~CG~R 35 (51)
.--+|-.||...--. ..-.|-.|||.
T Consensus 15 tHtlCrRCG~~syH~--qK~~Ca~CGyp 40 (94)
T 4a18_A 15 THTLCRRCGKATYHK--QKLRCAACGYP 40 (94)
T ss_dssp CEEECTTTCSEEEET--TTTEESSSCGG
T ss_pred ccceecCcCchhhhh--ccccccccCCc
Confidence 456788888765433 22478888875
No 479
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.53 E-value=28 Score=17.48 Aligned_cols=10 Identities=20% Similarity=0.477 Sum_probs=6.3
Q ss_pred EcCCCCCeee
Q 035461 11 ICGDCGMENT 20 (51)
Q Consensus 11 ~C~~Cg~~~~ 20 (51)
+|..|+..+.
T Consensus 11 ~C~~C~~~I~ 20 (76)
T 2cu8_A 11 KCPKCDKTVY 20 (76)
T ss_dssp BCTTTCCBCC
T ss_pred CCcCCCCEeE
Confidence 5666666655
No 480
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=21.25 E-value=46 Score=19.53 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=10.7
Q ss_pred eeEcCCCCCcEEEE
Q 035461 26 VIQCRECGYRILYK 39 (51)
Q Consensus 26 ~irC~~CG~RIlyK 39 (51)
-++|.+||+..+.-
T Consensus 69 rl~C~eC~~~~~~~ 82 (109)
T 4a18_C 69 KFDCTTCKTKRVIP 82 (109)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEecccCcccccc
Confidence 47899999877654
No 481
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=20.92 E-value=97 Score=17.14 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=14.4
Q ss_pred CCcEEEEEecCceEEEEcC
Q 035461 33 GYRILYKKRTRRIVQYEAR 51 (51)
Q Consensus 33 G~RIlyK~R~~~~~~~~Ar 51 (51)
++||+|..-...++.+.+|
T Consensus 75 ~yRivy~i~d~~i~Il~~~ 93 (96)
T 3oei_C 75 EHRLVYRAGDDEVTMLKAR 93 (96)
T ss_dssp SCEEEEEECSSEEEEEESS
T ss_pred CEEEEEEEECCEEEEEEee
Confidence 4899999988877666543
No 482
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=20.71 E-value=51 Score=17.12 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=7.3
Q ss_pred EEEcCCCCCeeec
Q 035461 9 SYICGDCGMENTL 21 (51)
Q Consensus 9 ~Y~C~~Cg~~~~~ 21 (51)
.|.|..|+..|=+
T Consensus 30 ~y~C~~C~~~FC~ 42 (59)
T 1z60_A 30 VYVCAVCQNVFCV 42 (59)
T ss_dssp EECCTTTTCCBCH
T ss_pred cEECCccCcCccc
Confidence 3566666655544
No 483
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=20.71 E-value=50 Score=19.75 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.9
Q ss_pred CeeEcCCCCCcE
Q 035461 25 DVIQCRECGYRI 36 (51)
Q Consensus 25 ~~irC~~CG~RI 36 (51)
.+|+|.+||.-+
T Consensus 19 ~~V~C~nCgr~v 30 (119)
T 3u5c_a 19 KPVRCVNCSKSI 30 (119)
T ss_dssp CEEECTTTCCEE
T ss_pred ccEeeccccccc
Confidence 689999999643
No 484
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=20.55 E-value=50 Score=18.48 Aligned_cols=35 Identities=3% Similarity=-0.138 Sum_probs=24.7
Q ss_pred ceEEEcCCCCCeeecC----CC--C--e--eEcCCCCCcEEEEEe
Q 035461 7 PVSYICGDCGMENTLK----PG--D--V--IQCRECGYRILYKKR 41 (51)
Q Consensus 7 ~~~Y~C~~Cg~~~~~~----~~--~--~--irC~~CG~RIlyK~R 41 (51)
.+.-.|.+|+..+-.. .+ + . --||.|+..+|+|+-
T Consensus 36 ~I~L~Ct~ct~~nY~T~KNrrn~peRLELkKYcP~crKHtlHkEt 80 (82)
T 1nkw_1 36 IVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREK 80 (82)
T ss_pred EEEEEEecCCCeeEEEecCCCCCCcceEEEccCCCCCCeeeEEee
Confidence 4678999997765432 11 1 1 269999999999974
No 485
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=20.52 E-value=9.7 Score=20.75 Aligned_cols=29 Identities=28% Similarity=0.666 Sum_probs=18.7
Q ss_pred CceEEEcCCCCCeeecCCC-----CeeEcCCCCC
Q 035461 6 EPVSYICGDCGMENTLKPG-----DVIQCRECGY 34 (51)
Q Consensus 6 ~~~~Y~C~~Cg~~~~~~~~-----~~irC~~CG~ 34 (51)
+.....|..||........ ..+-|.-||-
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 3455789999998876532 3477888873
No 486
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=20.47 E-value=10 Score=20.23 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=16.3
Q ss_pred EEcCCCCCeeecCC----CCeeEcCCCC
Q 035461 10 YICGDCGMENTLKP----GDVIQCRECG 33 (51)
Q Consensus 10 Y~C~~Cg~~~~~~~----~~~irC~~CG 33 (51)
-.|..||....... .+..-|.-||
T Consensus 8 ~~C~~C~tt~Tp~WR~gp~G~~LCNACG 35 (63)
T 3dfx_A 8 TSCANCQTTTTTLWRRNANGDPVCNACG 35 (63)
T ss_dssp CCCTTTCCSCCSSCCCCTTSCCCCHHHH
T ss_pred CcCCCcCCCCCCccCCCCCCCchhhHHH
Confidence 35999998877642 2346777777
No 487
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=20.14 E-value=62 Score=18.77 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=15.8
Q ss_pred CCCCCeeecC------CCCeeEcCCCCCcEE
Q 035461 13 GDCGMENTLK------PGDVIQCRECGYRIL 37 (51)
Q Consensus 13 ~~Cg~~~~~~------~~~~irC~~CG~RIl 37 (51)
..||..|-.. ......||.|...+-
T Consensus 94 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred cCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 4677776642 124468999987653
Done!