BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035465
MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNKQDS

High Scoring Gene Products

Symbol, full name Information P value
AT2G43780 protein from Arabidopsis thaliana 1.4e-18

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035465
        (60 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2043914 - symbol:AT2G43780 "AT2G43780" species...   224  1.4e-18   1


>TAIR|locus:2043914 [details] [associations]
            symbol:AT2G43780 "AT2G43780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002333
            EMBL:AF385698 EMBL:AY078016 EMBL:AY086362 IPI:IPI00529515
            PIR:D84870 RefSeq:NP_001154575.1 RefSeq:NP_181906.1
            UniGene:At.12152 STRING:O22825 PaxDb:O22825 PRIDE:O22825
            EnsemblPlants:AT2G43780.1 EnsemblPlants:AT2G43780.2 GeneID:818981
            KEGG:ath:AT2G43780 TAIR:At2g43780 eggNOG:NOG248601
            HOGENOM:HOG000241153 InParanoid:O22825 OMA:RSLAPKT PhylomeDB:O22825
            ProtClustDB:CLSN2683091 ArrayExpress:O22825 Genevestigator:O22825
            Uniprot:O22825
        Length = 67

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 44/55 (80%), Positives = 47/55 (85%)

Query:     1 MAGLAGFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQK 55
             MAG  GF+ L P+ KN VVAGGLTAFVFGVY+YTMRAVGGTDELQ AIDKFE QK
Sbjct:     1 MAGFPGFSYLGPKGKNTVVAGGLTAFVFGVYFYTMRAVGGTDELQVAIDKFEGQK 55


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       60        60   0.00091  102 3  11 22  0.37    28
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  375 (40 KB)
  Total size of DFA:  63 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.55u 0.14s 6.69t   Elapsed:  00:00:01
  Total cpu time:  6.55u 0.14s 6.69t   Elapsed:  00:00:01
  Start:  Thu May  9 16:39:20 2013   End:  Thu May  9 16:39:21 2013

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