Query 035465
Match_columns 60
No_of_seqs 86 out of 88
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:09:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09813 Coiled-coil_56: Coile 99.7 2.8E-18 6.1E-23 111.5 2.0 44 10-57 45-88 (100)
2 KOG4782 Predicted membrane pro 99.1 4.3E-11 9.3E-16 78.8 1.3 33 14-46 57-89 (108)
3 PF14055 NVEALA: NVEALA protei 66.4 12 0.00026 21.6 3.4 32 28-59 15-48 (65)
4 KOG3300 NADH:ubiquinone oxidor 56.0 2 4.4E-05 29.9 -1.3 49 6-54 18-71 (146)
5 PLN03155 cytochrome c oxidase 49.9 11 0.00024 23.1 1.4 21 11-31 14-34 (63)
6 PF13623 SurA_N_2: SurA N-term 48.8 13 0.00028 24.7 1.7 15 17-31 13-27 (145)
7 PTZ00234 variable surface prot 46.7 13 0.00028 29.1 1.6 29 14-42 364-392 (433)
8 PF13334 DUF4094: Domain of un 44.9 11 0.00025 23.7 0.9 18 15-32 2-19 (95)
9 PF04612 T2SM: Type II secreti 44.4 7.4 0.00016 24.6 0.0 30 7-36 8-37 (160)
10 TIGR03786 strep_pil_rpt strept 44.2 18 0.0004 21.1 1.7 15 28-42 9-23 (64)
11 PF10661 EssA: WXG100 protein 43.7 12 0.00025 25.2 0.9 13 20-32 126-138 (145)
12 TIGR01010 BexC_CtrB_KpsE polys 42.0 6.5 0.00014 28.3 -0.6 33 6-38 325-357 (362)
13 PLN00092 photosystem I reactio 39.6 18 0.00039 25.0 1.3 35 8-42 94-131 (137)
14 PF15188 CCDC-167: Coiled-coil 36.9 26 0.00057 22.1 1.6 20 13-32 66-85 (85)
15 PF14283 DUF4366: Domain of un 35.7 31 0.00067 24.6 2.0 21 18-39 164-184 (218)
16 PLN00077 photosystem II reacti 35.7 21 0.00046 24.4 1.1 33 8-40 84-119 (128)
17 PF05545 FixQ: Cbb3-type cytoc 34.1 13 0.00027 20.3 -0.1 32 21-52 16-47 (49)
18 TIGR01006 polys_exp_MPA1 polys 33.1 22 0.00048 23.8 0.9 25 9-33 170-194 (226)
19 PRK10692 hypothetical protein; 32.4 30 0.00066 22.5 1.4 24 11-35 6-29 (92)
20 PF12037 DUF3523: Domain of un 32.3 23 0.00049 26.6 0.9 18 15-32 236-253 (276)
21 PF10762 DUF2583: Protein of u 31.3 32 0.0007 22.3 1.4 24 11-35 6-29 (89)
22 PF13150 DUF3989: Protein of u 29.8 13 0.00028 23.1 -0.6 31 8-38 20-50 (85)
23 PF10890 DUF2741: Protein of u 29.1 1.3 2.7E-05 27.7 -5.2 36 7-42 27-67 (72)
24 PF06092 DUF943: Enterobacteri 28.3 44 0.00096 23.1 1.8 37 14-51 5-49 (157)
25 PF07123 PsbW: Photosystem II 28.0 29 0.00062 23.9 0.8 32 8-39 95-129 (138)
26 PF10126 Nit_Regul_Hom: Unchar 28.0 19 0.00041 24.0 -0.1 36 15-56 20-55 (110)
27 PF13807 GNVR: G-rich domain o 26.3 36 0.00078 19.9 0.9 18 10-27 55-72 (82)
28 PF06212 GRIM-19: GRIM-19 prot 26.1 11 0.00023 25.2 -1.6 37 6-42 14-53 (130)
29 PRK11068 phosphatidylglyceroph 26.0 19 0.00042 24.9 -0.3 38 16-53 51-90 (164)
30 PRK13183 psbN photosystem II r 25.6 56 0.0012 18.8 1.6 35 17-54 8-44 (46)
31 COG3197 FixS Uncharacterized p 25.3 22 0.00047 21.4 -0.1 20 18-37 7-28 (58)
32 PLN00088 predicted protein; Pr 25.2 85 0.0018 21.5 2.7 35 9-43 89-123 (127)
33 CHL00020 psbN photosystem II p 25.2 62 0.0013 18.4 1.7 35 17-54 5-41 (43)
34 COG5488 Integral membrane prot 24.5 31 0.00066 24.5 0.4 34 4-37 20-54 (164)
35 TIGR00847 ccoS cytochrome oxid 23.4 24 0.00052 20.3 -0.2 21 20-43 11-31 (51)
36 TIGR02876 spore_yqfD sporulati 23.3 42 0.0009 25.3 1.0 29 8-36 72-104 (382)
37 PF05392 COX7B: Cytochrome C o 22.6 20 0.00044 22.8 -0.7 25 14-39 37-61 (80)
38 PF02937 COX6C: Cytochrome c o 22.4 40 0.00087 20.5 0.6 25 12-36 16-40 (73)
39 PF14640 TMEM223: Transmembran 22.2 47 0.001 22.8 1.0 28 13-40 62-92 (170)
40 PF05628 Borrelia_P13: Borreli 22.0 34 0.00073 23.4 0.3 23 9-31 12-34 (135)
41 PRK09731 putative general secr 21.6 51 0.0011 23.0 1.1 26 7-32 29-54 (178)
42 cd01403 Cyt_c_Oxidase_VIIb Cyt 20.8 38 0.00082 20.0 0.3 17 24-40 18-34 (51)
43 PF10883 DUF2681: Protein of u 20.7 18 0.0004 22.9 -1.2 27 16-42 3-29 (87)
44 COG4071 Uncharacterized protei 20.3 26 0.00056 26.6 -0.6 25 7-31 179-203 (278)
45 PF13585 CHU_C: C-terminal dom 20.2 65 0.0014 19.1 1.2 12 26-37 62-73 (87)
No 1
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=99.71 E-value=2.8e-18 Score=111.49 Aligned_cols=44 Identities=36% Similarity=0.570 Sum_probs=39.4
Q ss_pred CccchhhHHHHHHHHHHhhheeeeeeeeeccccchhhhhhhhhhhhhc
Q 035465 10 LAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKNK 57 (60)
Q Consensus 10 lp~~~kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv~Id~fE~~k~~ 57 (60)
.|+|.||++||++|++||+|||+|||++|+||+| +|++|++.+.
T Consensus 45 ~~~R~rN~~Tgl~L~~~v~gIY~YTi~sV~Qe~F----~D~~eeeak~ 88 (100)
T PF09813_consen 45 QRRRRRNLLTGLALGAFVVGIYAYTIYSVKQEDF----LDELEEEAKA 88 (100)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhheeeeechhhh----HHHhhhHHHH
Confidence 3678999999999999999999999999999999 5577887664
No 2
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=99.06 E-value=4.3e-11 Score=78.85 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeeccccchhh
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVGGTDELQA 46 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv 46 (60)
-||.+++++|+++|+|||+||+++|+|+.|+|.
T Consensus 57 ykN~is~a~i~alViaIY~YTfYSikQErFLdE 89 (108)
T KOG4782|consen 57 YKNHISFAGIGALVIAIYGYTFYSIKQERFLDE 89 (108)
T ss_pred hhhhhhhHHHHHHHHHhhhheeeehhHHHHHHH
Confidence 569999999999999999999999999999653
No 3
>PF14055 NVEALA: NVEALA protein
Probab=66.38 E-value=12 Score=21.62 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=21.9
Q ss_pred hheeeeeeeeeccc--cchhhhhhhhhhhhhccC
Q 035465 28 FGVYYYTMRAVGGT--DELQAAIDKFEEQKNKQD 59 (60)
Q Consensus 28 ~GIY~YTi~AV~Qd--df~dv~Id~fE~~k~~~~ 59 (60)
+.+=.|.++.-.+. +..|+++++-|+-..-|.
T Consensus 15 ~~~ag~~~~~~~~~~~~lsdL~L~NVEALA~gE~ 48 (65)
T PF14055_consen 15 AAVAGYNVYQSQNKEVNLSDLALANVEALASGES 48 (65)
T ss_pred hhheeeeEEEeccCccccchHHHHhHHHHhcCCC
Confidence 55555666666553 489999999998665443
No 4
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=55.99 E-value=2 Score=29.89 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=34.0
Q ss_pred CCCCCccc---hhhHHHHHHHHHHhhheeeeeeeeeccccc--hhhhhhhhhhh
Q 035465 6 GFNTLAPR---TKNLVVAGGLTAFVFGVYYYTMRAVGGTDE--LQAAIDKFEEQ 54 (60)
Q Consensus 6 ~~~~lp~~---~kN~~tg~~L~afv~GIY~YTi~AV~Qddf--~dv~Id~fE~~ 54 (60)
||+-.+|. -|-..+|....+.++|+-+|-++++.|.+- ....|++|++.
T Consensus 18 Gy~~i~y~R~~pk~~~Sg~t~~aa~~gatayG~~~~~~~~kk~rr~kiEd~~a~ 71 (146)
T KOG3300|consen 18 GYAPIRYARRIPKTGPSGMTMFAAVSGATAYGMYQVGQGNKKRRRLKIEDYAAR 71 (146)
T ss_pred CcCcccccccCCccCCCcchhhhHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 56655553 345577888888888889999999988874 33455666554
No 5
>PLN03155 cytochrome c oxidase subunit 5C; Provisional
Probab=49.90 E-value=11 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=19.0
Q ss_pred ccchhhHHHHHHHHHHhhhee
Q 035465 11 APRTKNLVVAGGLTAFVFGVY 31 (60)
Q Consensus 11 p~~~kN~~tg~~L~afv~GIY 31 (60)
|+..|-++.|++|+-++.|.|
T Consensus 14 PsvvKEI~iG~~LGL~AG~~W 34 (63)
T PLN03155 14 PSVVKELCIGLTLGLAAGGLW 34 (63)
T ss_pred CchhhhHHHHhHHHHhhhhHH
Confidence 778999999999999988876
No 6
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=48.85 E-value=13 Score=24.71 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhee
Q 035465 17 LVVAGGLTAFVFGVY 31 (60)
Q Consensus 17 ~~tg~~L~afv~GIY 31 (60)
.++|++|+||+++-.
T Consensus 13 ~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 13 IVIGLALFAFIVGDF 27 (145)
T ss_pred HHHHHHHHHHHHHHH
Confidence 688999999999854
No 7
>PTZ00234 variable surface protein Vir12; Provisional
Probab=46.67 E-value=13 Score=29.10 Aligned_cols=29 Identities=3% Similarity=0.186 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
.||+++|.+|.|.++=.++|-|.+=-+-.
T Consensus 364 ~rniim~~ailGtifFlfyyn~ss~lks~ 392 (433)
T PTZ00234 364 FRHSIVGASIIGVLVFLFFFFKSTPIRSQ 392 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccchhcc
Confidence 79999999999999999999887654444
No 8
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=44.90 E-value=11 Score=23.68 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHhhheee
Q 035465 15 KNLVVAGGLTAFVFGVYY 32 (60)
Q Consensus 15 kN~~tg~~L~afv~GIY~ 32 (60)
++.+.-+|+++|++|+|.
T Consensus 2 ~kw~l~Lc~~SF~~G~lf 19 (95)
T PF13334_consen 2 RKWVLLLCIASFCAGMLF 19 (95)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 456788999999999994
No 9
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=44.37 E-value=7.4 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCCCccchhhHHHHHHHHHHhhheeeeeee
Q 035465 7 FNTLAPRTKNLVVAGGLTAFVFGVYYYTMR 36 (60)
Q Consensus 7 ~~~lp~~~kN~~tg~~L~afv~GIY~YTi~ 36 (60)
|.+|++|=|.+++.+++..+++.+|..-+.
T Consensus 8 w~~ls~REr~ll~~~~~~l~~~l~~~~~~~ 37 (160)
T PF04612_consen 8 WQSLSPRERRLLLVLGVVLLLALLYLLLWQ 37 (160)
T ss_dssp ------------------------------
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999988888877653
No 10
>TIGR03786 strep_pil_rpt streptococcal pilin isopeptide linkage domain. This model describes a domain that occurs once in the major pilin of Streptococcus pyogenes, Spy0128, but in higher copy numbers in other streptococcal proteins. The domain occurs nine times in a surface-anchored protein of Bifidobacterium longum. All members of this family have LPXTG-type sortase target sequences. The S. pyogenes major pilin has been shown to undergo isopeptide bond cross-linking, mediated by sortases, that are critical to maintaining pilus structural integrity. One such Lys-to-Asn isopeptide bond is to a near-invariant Asn near the C-terminal end of this domain (column 81 of the seed alignment). A Glu in the S. pyogenes major pilin (column 25 of the seed alignment), invariant as Glu or Gln, is described as catalytic for isopeptide bond formation.
Probab=44.24 E-value=18 Score=21.14 Aligned_cols=15 Identities=40% Similarity=0.820 Sum_probs=12.3
Q ss_pred hheeeeeeeeecccc
Q 035465 28 FGVYYYTMRAVGGTD 42 (60)
Q Consensus 28 ~GIY~YTi~AV~Qdd 42 (60)
.|+|.|||+=+...+
T Consensus 9 ~G~Y~YtV~E~~g~~ 23 (64)
T TIGR03786 9 VGTYTYTITEVKGKE 23 (64)
T ss_pred CeEEEEEEEEeCCCC
Confidence 589999999987654
No 11
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=43.74 E-value=12 Score=25.17 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=8.0
Q ss_pred HHHHHHHhhheee
Q 035465 20 AGGLTAFVFGVYY 32 (60)
Q Consensus 20 g~~L~afv~GIY~ 32 (60)
++.|.++++|||.
T Consensus 126 ~g~ll~i~~giy~ 138 (145)
T PF10661_consen 126 GGILLAICGGIYV 138 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3445566777774
No 12
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=42.02 E-value=6.5 Score=28.33 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=25.0
Q ss_pred CCCCCccchhhHHHHHHHHHHhhheeeeeeeee
Q 035465 6 GFNTLAPRTKNLVVAGGLTAFVFGVYYYTMRAV 38 (60)
Q Consensus 6 ~~~~lp~~~kN~~tg~~L~afv~GIY~YTi~AV 38 (60)
.-.+=|.+..|+++|+.++.++.|+-+.++..|
T Consensus 325 ~~p~~P~~~~~l~~~~~~gl~l~~~~~l~~~~i 357 (362)
T TIGR01010 325 DDALEPYRLYNILATFVILLILYGVLSLLLASI 357 (362)
T ss_pred CCcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557789999999999988888877665544
No 13
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=39.59 E-value=18 Score=25.02 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCCccchhhHHHHHHHH---HHhhheeeeeeeeecccc
Q 035465 8 NTLAPRTKNLVVAGGLT---AFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 8 ~~lp~~~kN~~tg~~L~---afv~GIY~YTi~AV~Qdd 42 (60)
..||+-..|.++|..|. +++.++|+..-+....||
T Consensus 94 TGlplGlsn~~LgwIL~gVf~lIWslYf~~~~~l~ede 131 (137)
T PLN00092 94 TGLPFGLSNNLLGWILLGVFGLIWSLYFVYTSTLEEDE 131 (137)
T ss_pred ccccccccCcchhhHHHhHHHHHHHHHheeecccCccc
Confidence 35888899999998776 566677766666655443
No 14
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=36.92 E-value=26 Score=22.10 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHHhhheee
Q 035465 13 RTKNLVVAGGLTAFVFGVYY 32 (60)
Q Consensus 13 ~~kN~~tg~~L~afv~GIY~ 32 (60)
..||.+++.+|+..++=||+
T Consensus 66 NrK~~~ls~~l~~v~~LvY~ 85 (85)
T PF15188_consen 66 NRKSMLLSVALFFVCFLVYG 85 (85)
T ss_pred hhhhHHHHHHHHHHHHHHcC
Confidence 47999999999998888874
No 15
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=35.70 E-value=31 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhheeeeeeeeec
Q 035465 18 VVAGGLTAFVFGVYYYTMRAVG 39 (60)
Q Consensus 18 ~tg~~L~afv~GIY~YTi~AV~ 39 (60)
++.++|....+|+|+| ++.++
T Consensus 164 l~lllv~l~gGGa~yY-fK~~K 184 (218)
T PF14283_consen 164 LLLLLVALIGGGAYYY-FKFYK 184 (218)
T ss_pred HHHHHHHHhhcceEEE-EEEec
Confidence 3444444555677666 33333
No 16
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=35.66 E-value=21 Score=24.45 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCCccchhhHHHHHHHH---HHhhheeeeeeeeecc
Q 035465 8 NTLAPRTKNLVVAGGLT---AFVFGVYYYTMRAVGG 40 (60)
Q Consensus 8 ~~lp~~~kN~~tg~~L~---afv~GIY~YTi~AV~Q 40 (60)
..||+-..|.++|..|. +++.++|+..-+..+.
T Consensus 84 tGl~lGlsn~~LgwIL~gVf~liw~ly~~~~~~l~~ 119 (128)
T PLN00077 84 TGLSLGLSNNLLGWILLGVFGLIWSLYTTYTSDLPE 119 (128)
T ss_pred ccccccccCchhhHHHHhHHHHHHHHHhheecccCC
Confidence 35888899999998776 5677777777776644
No 17
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=34.10 E-value=13 Score=20.27 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=19.1
Q ss_pred HHHHHHhhheeeeeeeeeccccchhhhhhhhh
Q 035465 21 GGLTAFVFGVYYYTMRAVGGTDELQAAIDKFE 52 (60)
Q Consensus 21 ~~L~afv~GIY~YTi~AV~Qddf~dv~Id~fE 52 (60)
+.++++-+||.+|..+.=++++|.+.+=-+|+
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 34445556777777666667776555544444
No 18
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=33.07 E-value=22 Score=23.84 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=16.5
Q ss_pred CCccchhhHHHHHHHHHHhhheeee
Q 035465 9 TLAPRTKNLVVAGGLTAFVFGVYYY 33 (60)
Q Consensus 9 ~lp~~~kN~~tg~~L~afv~GIY~Y 33 (60)
.-|.+.+|.+.|+.++.++...+++
T Consensus 170 ~~P~~~~~~~~g~~~G~~~~~~~~~ 194 (226)
T TIGR01006 170 SSPNPKRNLLIGFLLGLVVALIIVL 194 (226)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788988887776655544443
No 19
>PRK10692 hypothetical protein; Provisional
Probab=32.43 E-value=30 Score=22.51 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=19.1
Q ss_pred ccchhhHHHHHHHHHHhhheeeeee
Q 035465 11 APRTKNLVVAGGLTAFVFGVYYYTM 35 (60)
Q Consensus 11 p~~~kN~~tg~~L~afv~GIY~YTi 35 (60)
+.+..|.+.|+++...++|| .|+|
T Consensus 6 a~~~GN~lMglGmv~Mv~gi-gysi 29 (92)
T PRK10692 6 ASLLGNVLMGLGLVVMVVGV-GYSI 29 (92)
T ss_pred hHHHhhHHHHHHHHHHHHHH-HHHH
Confidence 45678999999999999987 3443
No 20
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=32.29 E-value=23 Score=26.57 Aligned_cols=18 Identities=50% Similarity=0.682 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHhhheee
Q 035465 15 KNLVVAGGLTAFVFGVYY 32 (60)
Q Consensus 15 kN~~tg~~L~afv~GIY~ 32 (60)
|=+.+.++++++++|||+
T Consensus 236 kl~~~vgg~T~LA~GvYt 253 (276)
T PF12037_consen 236 KLTTTVGGLTALAAGVYT 253 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334556788899999996
No 21
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=31.26 E-value=32 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=19.2
Q ss_pred ccchhhHHHHHHHHHHhhheeeeee
Q 035465 11 APRTKNLVVAGGLTAFVFGVYYYTM 35 (60)
Q Consensus 11 p~~~kN~~tg~~L~afv~GIY~YTi 35 (60)
+....|.+.|+++...++|| .|+|
T Consensus 6 a~~~GN~lMglGmv~Mv~gi-gysi 29 (89)
T PF10762_consen 6 AFLLGNVLMGLGMVVMVGGI-GYSI 29 (89)
T ss_pred hHHHhhHHHHHhHHHHHHhH-HHHH
Confidence 45678999999999999998 3443
No 22
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=29.79 E-value=13 Score=23.12 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCCccchhhHHHHHHHHHHhhheeeeeeeee
Q 035465 8 NTLAPRTKNLVVAGGLTAFVFGVYYYTMRAV 38 (60)
Q Consensus 8 ~~lp~~~kN~~tg~~L~afv~GIY~YTi~AV 38 (60)
.+||++.+=.++-..+..|.++--+.|.+|+
T Consensus 20 ~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~ai 50 (85)
T PF13150_consen 20 GRLSPKQRLRVVLVMLVLFAALCLYMTVSAI 50 (85)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899998888888888888777666677764
No 23
>PF10890 DUF2741: Protein of unknown function (DUF2741); InterPro: IPR020101 This entry represents subunit 8 of the Cytochrome b-c1 complex. The ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) is part of the mitochondrial respiratory chain. This subunit, together with cytochrome b, binds to ubiquinone. In plants, the b-c1 complex contains 10 subunits: 3 respiratory subunits, 2 core proteins and 5 low-molecular weight proteins.
Probab=29.09 E-value=1.3 Score=27.74 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=27.2
Q ss_pred CCCCccc----h-hhHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 7 FNTLAPR----T-KNLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 7 ~~~lp~~----~-kN~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
|..||.+ + .|.+-+..+++-++|+|+|+.+-..||+
T Consensus 27 wKDlp~ki~hk~~enwv~a~~~~~p~~Gt~~Ya~~y~e~EK 67 (72)
T PF10890_consen 27 WKDLPKKIHHKFSENWVSATLFLVPLVGTYWYAENYKEQEK 67 (72)
T ss_pred hhhcHHHHHHHHhhcceeeEEEeeeehhhHHHHHHHHHHHh
Confidence 3456654 3 4788888888999999999988777665
No 24
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=28.31 E-value=44 Score=23.10 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhhheeee------eeeeecccc--chhhhhhhh
Q 035465 14 TKNLVVAGGLTAFVFGVYYY------TMRAVGGTD--ELQAAIDKF 51 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~Y------Ti~AV~Qdd--f~dv~Id~f 51 (60)
.+..++++.|++.++ .+.+ .|-+|+|++ +.++.++.|
T Consensus 5 ~~~ii~~l~l~~~~~-y~~W~~~rpV~Ii~vh~~~~~~~~IlV~~~ 49 (157)
T PF06092_consen 5 SKKIIIALFLLACIL-YFLWLTLRPVEIIAVHQDNNYTSDILVKNF 49 (157)
T ss_pred hhhhHHHHHHHHHHH-HhhhhccCCeEEEEEecCCCceeeeeeecC
Confidence 344566666666554 3333 466888987 567766654
No 25
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=28.04 E-value=29 Score=23.94 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=22.0
Q ss_pred CCCccchhhHHHHHHHHH---Hhhheeeeeeeeec
Q 035465 8 NTLAPRTKNLVVAGGLTA---FVFGVYYYTMRAVG 39 (60)
Q Consensus 8 ~~lp~~~kN~~tg~~L~a---fv~GIY~YTi~AV~ 39 (60)
..||.-..|.++|..|.+ ++.+.|+..-+-+.
T Consensus 95 TGL~lGlsn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 95 TGLPLGLSNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred ccccccccCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 358888999999988874 45555555545554
No 26
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=27.96 E-value=19 Score=24.05 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhhheeeeeeeeeccccchhhhhhhhhhhhh
Q 035465 15 KNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEEQKN 56 (60)
Q Consensus 15 kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv~Id~fE~~k~ 56 (60)
=|++|=++++ |-|.|-.+-++.+||-..-|+ |+|++
T Consensus 20 INaLte~GIT----GFyl~eYkGmSP~~wkgf~l~--EDpe~ 55 (110)
T PF10126_consen 20 INALTEGGIT----GFYLHEYKGMSPQDWKGFLLD--EDPEM 55 (110)
T ss_pred HHHHHhcCcc----EEEeEeecCCChHHhcCcccc--cCHHH
Confidence 3666655554 569999999999998666555 66654
No 27
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.26 E-value=36 Score=19.86 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=11.2
Q ss_pred CccchhhHHHHHHHHHHh
Q 035465 10 LAPRTKNLVVAGGLTAFV 27 (60)
Q Consensus 10 lp~~~kN~~tg~~L~afv 27 (60)
=|.+..|++.|+.++.+.
T Consensus 55 ~P~~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 55 SPKRALILALGLFLGLIL 72 (82)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 456677777776655443
No 28
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=26.10 E-value=11 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=27.5
Q ss_pred CCCCCccch---hhHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 6 GFNTLAPRT---KNLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 6 ~~~~lp~~~---kN~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
||...+|++ +-...|..+++.++|+.+|.++.+.|.+
T Consensus 14 GY~pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~~~~ 53 (130)
T PF06212_consen 14 GYPPVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVGQGN 53 (130)
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555532 2247788899999999999999888866
No 29
>PRK11068 phosphatidylglycerophosphatase A; Provisional
Probab=26.04 E-value=19 Score=24.89 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhheee--eeeeeeccccchhhhhhhhhh
Q 035465 16 NLVVAGGLTAFVFGVYY--YTMRAVGGTDELQAAIDKFEE 53 (60)
Q Consensus 16 N~~tg~~L~afv~GIY~--YTi~AV~Qddf~dv~Id~fE~ 53 (60)
+....+.+.++++|+|+ .+-+..+.+|--.|.||++=+
T Consensus 51 ~~~~~~~~~~~~iGi~~~~~~~~~~g~~Dp~~IViDEv~G 90 (164)
T PRK11068 51 QLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIG 90 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCeeehhHHH
Confidence 34455666688999997 666778888888888887643
No 30
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=25.61 E-value=56 Score=18.84 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhheeeeeee-eecccc-chhhhhhhhhhh
Q 035465 17 LVVAGGLTAFVFGVYYYTMR-AVGGTD-ELQAAIDKFEEQ 54 (60)
Q Consensus 17 ~~tg~~L~afv~GIY~YTi~-AV~Qdd-f~dv~Id~fE~~ 54 (60)
.++.+.++++.+|+=.|.+| |.||-. .+ -|+||+-
T Consensus 8 ~~~~i~i~~lL~~~TgyaiYtaFGppSk~L---rDPFeeH 44 (46)
T PRK13183 8 LSLAITILAILLALTGFGIYTAFGPPSKEL---DDPFDDH 44 (46)
T ss_pred HHHHHHHHHHHHHHhhheeeeccCCccccc---CCchhhc
Confidence 35567788899999999887 566543 22 3566653
No 31
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=25.33 E-value=22 Score=21.39 Aligned_cols=20 Identities=5% Similarity=0.358 Sum_probs=9.2
Q ss_pred HHHHHHHHHh--hheeeeeeee
Q 035465 18 VVAGGLTAFV--FGVYYYTMRA 37 (60)
Q Consensus 18 ~tg~~L~afv--~GIY~YTi~A 37 (60)
++..+|..+. ++++++++++
T Consensus 7 Lipvsi~l~~v~l~~flWavks 28 (58)
T COG3197 7 LIPVSILLGAVGLGAFLWAVKS 28 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444 4444445444
No 32
>PLN00088 predicted protein; Provisional
Probab=25.21 E-value=85 Score=21.48 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=29.7
Q ss_pred CCccchhhHHHHHHHHHHhhheeeeeeeeeccccc
Q 035465 9 TLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTDE 43 (60)
Q Consensus 9 ~lp~~~kN~~tg~~L~afv~GIY~YTi~AV~Qddf 43 (60)
.+.|-.+|.+..+..+++|++.-.-.+-.|+|.|-
T Consensus 89 gvTPSLsNFL~SLvaGgvVv~pI~~Ali~VSq~D~ 123 (127)
T PLN00088 89 GVSPSLKNLLLSVVAGGVVITVIGVAVAGVSTFDP 123 (127)
T ss_pred CCChhHHHHHHHHHhhhhhhhhhheeeEEEeccCc
Confidence 35677899999999999998888888888999884
No 33
>CHL00020 psbN photosystem II protein N
Probab=25.17 E-value=62 Score=18.38 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhheeeeeee-eecccc-chhhhhhhhhhh
Q 035465 17 LVVAGGLTAFVFGVYYYTMR-AVGGTD-ELQAAIDKFEEQ 54 (60)
Q Consensus 17 ~~tg~~L~afv~GIY~YTi~-AV~Qdd-f~dv~Id~fE~~ 54 (60)
.++...++++.+|+=.|+|| |.|+-. .+ -|+||+-
T Consensus 5 ~~~~i~i~~ll~~~Tgy~iYtaFGppSk~L---rDPfeeH 41 (43)
T CHL00020 5 TLVAIFISGLLVSFTGYALYTAFGQPSKQL---RDPFEEH 41 (43)
T ss_pred hhHHHHHHHHHHHhhheeeeeccCCchhcc---CCchhhc
Confidence 35667788899999999887 566543 22 3556653
No 34
>COG5488 Integral membrane protein [Function unknown]
Probab=24.51 E-value=31 Score=24.51 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=27.1
Q ss_pred ccCCCCCcc-chhhHHHHHHHHHHhhheeeeeeee
Q 035465 4 LAGFNTLAP-RTKNLVVAGGLTAFVFGVYYYTMRA 37 (60)
Q Consensus 4 ~~~~~~lp~-~~kN~~tg~~L~afv~GIY~YTi~A 37 (60)
+.-++||-| -+++++..++++.++.|++.-.|.|
T Consensus 20 l~p~rSlg~rgf~~lm~~~~~~~~~v~~ff~~igA 54 (164)
T COG5488 20 LTPHRSLGPRGFGVLMLALGILSLVVAIFFLVIGA 54 (164)
T ss_pred hCcccccChhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677766 4899999999999999998877665
No 35
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=23.37 E-value=24 Score=20.34 Aligned_cols=21 Identities=5% Similarity=-0.001 Sum_probs=9.8
Q ss_pred HHHHHHHhhheeeeeeeeeccccc
Q 035465 20 AGGLTAFVFGVYYYTMRAVGGTDE 43 (60)
Q Consensus 20 g~~L~afv~GIY~YTi~AV~Qddf 43 (60)
++.|+++.+.++.+ ||+...|
T Consensus 11 Sl~l~~~~l~~f~W---avk~GQf 31 (51)
T TIGR00847 11 SLLLGGVGLVAFLW---SLKSGQY 31 (51)
T ss_pred HHHHHHHHHHHHHH---HHccCCC
Confidence 33444444444444 4555554
No 36
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=23.34 E-value=42 Score=25.34 Aligned_cols=29 Identities=21% Similarity=0.167 Sum_probs=19.4
Q ss_pred CCCccc----hhhHHHHHHHHHHhhheeeeeee
Q 035465 8 NTLAPR----TKNLVVAGGLTAFVFGVYYYTMR 36 (60)
Q Consensus 8 ~~lp~~----~kN~~tg~~L~afv~GIY~YTi~ 36 (60)
..|||. .|+...-+|++.|++.+|..|-.
T Consensus 72 ~GlpF~~~r~~kRk~~~~G~~~f~~ll~~lS~f 104 (382)
T TIGR02876 72 KGLPFLFKRLRKRPGILIGILLFLAIVYFLSNF 104 (382)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 457886 77776767777777666665533
No 37
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=22.57 E-value=20 Score=22.79 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeec
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVG 39 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~ 39 (60)
-.|.++..+ ++||+.+|.|++--+|
T Consensus 37 YGn~vL~~G-a~FC~~~W~y~~TQ~G 61 (80)
T PF05392_consen 37 YGNAVLASG-ATFCVAVWTYVATQIG 61 (80)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHSS
T ss_pred cCceeeecc-cchhhhhHhhhheecc
Confidence 456665544 4788999999876554
No 38
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=22.36 E-value=40 Score=20.47 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.2
Q ss_pred cchhhHHHHHHHHHHhhheeeeeee
Q 035465 12 PRTKNLVVAGGLTAFVFGVYYYTMR 36 (60)
Q Consensus 12 ~~~kN~~tg~~L~afv~GIY~YTi~ 36 (60)
+..+|++++++++..+.+.|.|...
T Consensus 16 ~l~~~i~~a~~ls~~~~~~~kf~v~ 40 (73)
T PF02937_consen 16 RLKRHIVVAFVLSLGVAAAYKFGVA 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999998888877766553
No 39
>PF14640 TMEM223: Transmembrane protein 223
Probab=22.23 E-value=47 Score=22.84 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=19.9
Q ss_pred chhhHHHHHHHH---HHhhheeeeeeeeecc
Q 035465 13 RTKNLVVAGGLT---AFVFGVYYYTMRAVGG 40 (60)
Q Consensus 13 ~~kN~~tg~~L~---afv~GIY~YTi~AV~Q 40 (60)
+.||.++++++. ++.++++.|+-|+|++
T Consensus 62 ~~R~gl~~~~~~~g~~~l~~~~~f~rRsV~~ 92 (170)
T PF14640_consen 62 KWRYGLTAICLLFGALILGAGWFFPRRSVRY 92 (170)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhheeeE
Confidence 456777777663 5667778898888864
No 40
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=22.03 E-value=34 Score=23.38 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=18.7
Q ss_pred CCccchhhHHHHHHHHHHhhhee
Q 035465 9 TLAPRTKNLVVAGGLTAFVFGVY 31 (60)
Q Consensus 9 ~lp~~~kN~~tg~~L~afv~GIY 31 (60)
.|-|..-|+.+|+++++||=|-|
T Consensus 12 ~l~P~LLNlFlgfGIGSFvqGD~ 34 (135)
T PF05628_consen 12 ILVPFLLNLFLGFGIGSFVQGDY 34 (135)
T ss_pred hhHHHHHHHHHhcCcchhhccce
Confidence 35677889999999999987766
No 41
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=21.58 E-value=51 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=20.5
Q ss_pred CCCCccchhhHHHHHHHHHHhhheee
Q 035465 7 FNTLAPRTKNLVVAGGLTAFVFGVYY 32 (60)
Q Consensus 7 ~~~lp~~~kN~~tg~~L~afv~GIY~ 32 (60)
+.++++|=+.++.+++.+.+++-+|+
T Consensus 29 W~~ls~REq~ll~~~g~vL~l~i~Y~ 54 (178)
T PRK09731 29 LAGRSPREKGMLLAAVVFLFSVGYYV 54 (178)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999988888877766664
No 42
>cd01403 Cyt_c_Oxidase_VIIb Cytochrome C oxidase chain VIIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIb subunit is found only in eukaryotes and its specific function remains unclear. A rare polymorphism of the CcO VIIb gene may be associated with the high risk of nasopharyngeal carcinoma in a Cantonese family.
Probab=20.77 E-value=38 Score=20.00 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.4
Q ss_pred HHHhhheeeeeeeeecc
Q 035465 24 TAFVFGVYYYTMRAVGG 40 (60)
Q Consensus 24 ~afv~GIY~YTi~AV~Q 40 (60)
++|++++|.|.+--.|-
T Consensus 18 a~Fc~avw~~v~TQ~GI 34 (51)
T cd01403 18 ATFCTAVWTYVMTQTGI 34 (51)
T ss_pred cchhhhhhhheeeecce
Confidence 47899999999876653
No 43
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.71 E-value=18 Score=22.86 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 16 NLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 16 N~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
|..+-+++++++++|++|-.+-+.|-.
T Consensus 3 ~l~iv~~~~~v~~~i~~y~~~k~~ka~ 29 (87)
T PF10883_consen 3 NLQIVGGVGAVVALILAYLWWKVKKAK 29 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888999999888776644
No 44
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.34 E-value=26 Score=26.56 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.0
Q ss_pred CCCCccchhhHHHHHHHHHHhhhee
Q 035465 7 FNTLAPRTKNLVVAGGLTAFVFGVY 31 (60)
Q Consensus 7 ~~~lp~~~kN~~tg~~L~afv~GIY 31 (60)
|.+||+..-.+++|.+.++|.+|=.
T Consensus 179 FT~lp~a~pgI~sgtGv~Gfl~GRl 203 (278)
T COG4071 179 FTALPYAIPGIISGTGVFGFLLGRL 203 (278)
T ss_pred HhhccccCCCeecccchHHHHHHHh
Confidence 7899999999999999999988843
No 45
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=20.21 E-value=65 Score=19.10 Aligned_cols=12 Identities=25% Similarity=0.705 Sum_probs=9.3
Q ss_pred Hhhheeeeeeee
Q 035465 26 FVFGVYYYTMRA 37 (60)
Q Consensus 26 fv~GIY~YTi~A 37 (60)
.--|+|+|.|..
T Consensus 62 ~p~G~Y~Y~i~~ 73 (87)
T PF13585_consen 62 LPSGTYFYVIEY 73 (87)
T ss_dssp --SEEEEEEEEE
T ss_pred CCCceEEEEEEE
Confidence 346899999999
Done!