Query 035465
Match_columns 60
No_of_seqs 86 out of 88
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 04:31:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035465.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035465hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_K IHQ, cytochrome C oxida 33.6 6.2 0.00021 22.9 -0.7 26 14-40 13-38 (56)
2 2y69_K Cytochrome C oxidase po 27.4 9.3 0.00032 23.4 -0.7 26 14-40 37-62 (80)
3 3arc_X Photosystem II PSBX pro 27.3 6.4 0.00022 21.2 -1.3 33 10-42 2-34 (39)
4 3bz1_X Photosystem II PSBX pro 24.7 12 0.00042 21.1 -0.4 34 9-42 11-44 (50)
5 1v54_I STA, cytochrome C oxida 24.0 23 0.00077 20.9 0.6 45 12-56 16-65 (73)
6 3hym_A Anaphase-promoting comp 23.5 27 0.00092 17.7 0.8 18 37-59 10-27 (29)
7 3klq_A Putative pilus anchorin 21.9 40 0.0014 21.8 1.6 15 27-41 59-73 (141)
8 2lom_A HIG1 domain family memb 23.7 25 0.00085 21.4 0.0 19 17-36 66-84 (93)
9 1dw9_A Cyanate lyase; cyanate 15.5 6.8 0.00023 26.0 -3.3 19 27-45 100-118 (156)
10 4ew5_A CIGR protein; inner mem 13.4 35 0.0012 21.3 -0.3 19 3-21 28-47 (102)
No 1
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=33.64 E-value=6.2 Score=22.86 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeecc
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVGG 40 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~Q 40 (60)
-.|.++..+ ++|++.+|.|++--+|=
T Consensus 13 YGn~~L~~G-a~FC~a~W~y~~TQ~GI 38 (56)
T 1v54_K 13 YGNAVLASG-ATFCVAVWVYMATQIGI 38 (56)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHSCC
T ss_pred cCceeeecc-hhhhHhhHhhhheeece
Confidence 456555443 47899999998866553
No 2
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=27.40 E-value=9.3 Score=23.45 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeecc
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVGG 40 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~Q 40 (60)
-.|.++..+ ++|++.+|.|++--+|=
T Consensus 37 YGn~~L~~G-a~FC~a~W~y~~TQ~GI 62 (80)
T 2y69_K 37 YGNAVLASG-ATFCVAVWVYMATQIGI 62 (80)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHSCC
T ss_pred cCceeeecc-hhHHHhhHHHhheecce
Confidence 456555443 47899999998866553
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=27.28 E-value=6.4 Score=21.20 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=22.5
Q ss_pred CccchhhHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 10 LAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 10 lp~~~kN~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
+.|-.+|.+..+..+++++++=+=.+-.|+|.|
T Consensus 2 mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D 34 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVVLGLTFAVLIAISQID 34 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHheeEeccC
Confidence 346678999988888888777443444555555
No 4
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=24.70 E-value=12 Score=21.08 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCccchhhHHHHHHHHHHhhheeeeeeeeecccc
Q 035465 9 TLAPRTKNLVVAGGLTAFVFGVYYYTMRAVGGTD 42 (60)
Q Consensus 9 ~lp~~~kN~~tg~~L~afv~GIY~YTi~AV~Qdd 42 (60)
.+.|-.+|.+..+..+++++++=+=.+-.|+|.|
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D 44 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQID 44 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccC
Confidence 4567789999999999888877444555667766
No 5
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=23.97 E-value=23 Score=20.90 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHHHHhhheeeeeeeeecc---ccch--hhhhhhhhhhhh
Q 035465 12 PRTKNLVVAGGLTAFVFGVYYYTMRAVGG---TDEL--QAAIDKFEEQKN 56 (60)
Q Consensus 12 ~~~kN~~tg~~L~afv~GIY~YTi~AV~Q---ddf~--dv~Id~fE~~k~ 56 (60)
+..+|++++++++..+.+.|.|....=+. .||- =.+-++||+-++
T Consensus 16 ~lr~~i~~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD~~k~ferMk~ 65 (73)
T 1v54_I 16 RLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDFEEMRK 65 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35789999999998888877775543322 2221 023556666654
No 6
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=23.54 E-value=27 Score=17.71 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=12.5
Q ss_pred eeccccchhhhhhhhhhhhhccC
Q 035465 37 AVGGTDELQAAIDKFEEQKNKQD 59 (60)
Q Consensus 37 AV~Qddf~dv~Id~fE~~k~~~~ 59 (60)
.++.|| |..||+-++.-|
T Consensus 10 ~l~~eD-----i~e~E~~rke~e 27 (29)
T 3hym_A 10 ELKLDD-----IEEFENIRKDLE 27 (29)
T ss_dssp CCCSGG-----GHHHHHHHHHC-
T ss_pred EecHHH-----HHHHHHHHHHHh
Confidence 456777 788998887643
No 7
>3klq_A Putative pilus anchoring protein; CNAB fold, inverse IGG fold, polyproline-II-like helix, cell; 1.90A {Streptococcus pyogenes}
Probab=21.90 E-value=40 Score=21.77 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=11.9
Q ss_pred hhheeeeeeeeeccc
Q 035465 27 VFGVYYYTMRAVGGT 41 (60)
Q Consensus 27 v~GIY~YTi~AV~Qd 41 (60)
-.|+|.|||+=+...
T Consensus 59 ~~G~Y~YtI~E~~G~ 73 (141)
T 3klq_A 59 TVGQYTYRVYQKPSQ 73 (141)
T ss_dssp SCEEEEEEEEECCCS
T ss_pred CCEEEEEEEEEeCCC
Confidence 368999999987554
No 8
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=23.68 E-value=25 Score=21.42 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhheeeeeee
Q 035465 17 LVVAGGLTAFVFGVYYYTMR 36 (60)
Q Consensus 17 ~~tg~~L~afv~GIY~YTi~ 36 (60)
.+=|+.+.++++|++ ||++
T Consensus 66 ~aQg~tV~al~~g~~-ys~~ 84 (93)
T 2lom_A 66 AAQGFVVGAMTVGMG-YSMY 84 (93)
Confidence 345777778888876 5554
No 9
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=15.50 E-value=6.8 Score=26.02 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.8
Q ss_pred hhheeeeeeeeeccccchh
Q 035465 27 VFGVYYYTMRAVGGTDELQ 45 (60)
Q Consensus 27 v~GIY~YTi~AV~Qddf~d 45 (60)
++.+|.+||++|=+|.|=|
T Consensus 100 ~v~vYG~~~K~li~E~FGD 118 (156)
T 1dw9_A 100 MLQVYGTTLKALVHEKFGD 118 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhhHHHHHHHHHHcCc
Confidence 4679999999999988854
No 10
>4ew5_A CIGR protein; inner membrane protein, structural genomics, APC101781, PSI- midwest center for structural genomics, MCSG; 1.87A {Salmonella enterica subsp}
Probab=13.45 E-value=35 Score=21.31 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=13.8
Q ss_pred cccCCCCCcc-chhhHHHHH
Q 035465 3 GLAGFNTLAP-RTKNLVVAG 21 (60)
Q Consensus 3 ~~~~~~~lp~-~~kN~~tg~ 21 (60)
|+.|+.+||| ..||..-|-
T Consensus 28 ~~~g~~~lPPGiaK~w~RG~ 47 (102)
T 4ew5_A 28 GLTGYQSLPPGIAKNLARGK 47 (102)
T ss_dssp TCCCCCCCCTTTTTCCCTTS
T ss_pred CccCCCCCCcchhhccccCC
Confidence 6788999999 557765553
Done!