Query 035465
Match_columns 60
No_of_seqs 86 out of 88
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 04:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035465.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035465hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q35a_ c.94.1.1 (A:) Ferric-b 22.7 20 0.0014 21.5 1.8 17 38-54 9-25 (318)
2 d1q90l_ f.23.24.1 (L:) PetL su 20.8 17 0.0012 17.5 0.9 18 19-36 8-27 (32)
3 d1v54k_ f.23.5.1 (K:) Mitochon 19.8 9.8 0.00071 20.1 -0.1 25 14-39 8-32 (49)
4 d1dwka2 d.72.1.1 (A:87-156) Cy 14.5 3 0.00022 23.6 -3.3 19 27-45 14-32 (70)
5 d1v54i_ f.23.3.1 (I:) Mitochon 13.8 35 0.0026 19.0 1.3 24 12-35 16-39 (73)
6 d1xmec1 f.23.9.1 (C:2-34) Bact 13.3 32 0.0024 16.6 0.9 15 18-32 13-27 (33)
7 d1bx4a_ c.72.1.1 (A:) Adenosin 12.8 78 0.0057 18.6 2.8 39 15-53 64-102 (342)
8 d1y9ua_ c.94.1.1 (A:) Ferric-b 12.4 51 0.0037 18.6 1.8 18 38-55 8-25 (318)
9 d1lfwa2 d.58.19.1 (A:187-382) 11.1 55 0.004 18.7 1.6 21 3-23 79-99 (196)
10 d1i12a_ d.108.1.1 (A:) Glucosa 10.7 51 0.0037 17.1 1.3 14 33-46 5-18 (157)
No 1
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]}
Probab=22.69 E-value=20 Score=21.52 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=14.5
Q ss_pred eccccchhhhhhhhhhh
Q 035465 38 VGGTDELQAAIDKFEEQ 54 (60)
Q Consensus 38 V~Qddf~dv~Id~fE~~ 54 (60)
=.+++.++--|++||++
T Consensus 9 ~~~~~~~~~l~~~Fek~ 25 (318)
T d1q35a_ 9 YRQPYLIEPMLKNFEKD 25 (318)
T ss_dssp SSCGGGTHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHh
Confidence 35888999999999986
No 2
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.77 E-value=17 Score=17.53 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=10.6
Q ss_pred HHHHHH--HHhhheeeeeee
Q 035465 19 VAGGLT--AFVFGVYYYTMR 36 (60)
Q Consensus 19 tg~~L~--afv~GIY~YTi~ 36 (60)
+|+.++ +|.+|||.=-++
T Consensus 8 vglligal~~tlgiylgllk 27 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGLLK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455555 577888854333
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.78 E-value=9.8 Score=20.11 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHhhheeeeeeeeec
Q 035465 14 TKNLVVAGGLTAFVFGVYYYTMRAVG 39 (60)
Q Consensus 14 ~kN~~tg~~L~afv~GIY~YTi~AV~ 39 (60)
-.|.++..+ .+|+++||.|.+--.+
T Consensus 8 YGn~vL~~G-a~fc~avW~yv~TQ~g 32 (49)
T d1v54k_ 8 YGNAVLASG-ATFCVAVWVYMATQIG 32 (49)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHSC
T ss_pred cCcEEEecc-cchhhhhhhheeeeee
Confidence 345554433 4788999999875444
No 4
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=3 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.7
Q ss_pred hhheeeeeeeeeccccchh
Q 035465 27 VFGVYYYTMRAVGGTDELQ 45 (60)
Q Consensus 27 v~GIY~YTi~AV~Qddf~d 45 (60)
++.+|..||++|=+|.|=|
T Consensus 14 ~v~vYG~~~K~li~E~FGD 32 (70)
T d1dwka2 14 MLQVYGTTLKALVHEKFGD 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhcHHHHHHHHHHccc
Confidence 5678999999998888755
No 5
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.76 E-value=35 Score=18.98 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=19.1
Q ss_pred cchhhHHHHHHHHHHhhheeeeee
Q 035465 12 PRTKNLVVAGGLTAFVFGVYYYTM 35 (60)
Q Consensus 12 ~~~kN~~tg~~L~afv~GIY~YTi 35 (60)
++.+|++.+++++..+.+.|-|.+
T Consensus 16 ~lk~hl~~a~~lsl~~a~~~Kf~v 39 (73)
T d1v54i_ 16 RLRFHIVGAFMVSLGFATFYKFAV 39 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999988888876554
No 6
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=13.27 E-value=32 Score=16.56 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhheee
Q 035465 18 VVAGGLTAFVFGVYY 32 (60)
Q Consensus 18 ~tg~~L~afv~GIY~ 32 (60)
+..+.|.-|-+|+|+
T Consensus 13 il~l~ilvfw~gv~a 27 (33)
T d1xmec1 13 VLTLTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555553
No 7
>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.76 E-value=78 Score=18.62 Aligned_cols=39 Identities=10% Similarity=-0.143 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhhheeeeeeeeeccccchhhhhhhhhh
Q 035465 15 KNLVVAGGLTAFVFGVYYYTMRAVGGTDELQAAIDKFEE 53 (60)
Q Consensus 15 kN~~tg~~L~afv~GIY~YTi~AV~Qddf~dv~Id~fE~ 53 (60)
-|.+...+.+.-=+|.-..-+-.||+|.+-+..++.+++
T Consensus 64 ~N~a~~~a~~l~~lG~~~~~ig~vG~D~~G~~i~~~l~~ 102 (342)
T d1bx4a_ 64 QNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAE 102 (342)
T ss_dssp HHHHHHHHHHHCSSTTCEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEEeecCCChhhhhhhhhhhh
Confidence 355555544444467777778899999888888887765
No 8
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]}
Probab=12.43 E-value=51 Score=18.64 Aligned_cols=18 Identities=17% Similarity=0.315 Sum_probs=13.0
Q ss_pred eccccchhhhhhhhhhhh
Q 035465 38 VGGTDELQAAIDKFEEQK 55 (60)
Q Consensus 38 V~Qddf~dv~Id~fE~~k 55 (60)
=..++.++-.|+.||++-
T Consensus 8 ~~~e~~~~~li~~Fek~t 25 (318)
T d1y9ua_ 8 TREPKLIQPLLDAFAKDS 25 (318)
T ss_dssp SSCGGGTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 335667787899999763
No 9
>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}
Probab=11.05 E-value=55 Score=18.72 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=17.9
Q ss_pred cccCCCCCccchhhHHHHHHH
Q 035465 3 GLAGFNTLAPRTKNLVVAGGL 23 (60)
Q Consensus 3 ~~~~~~~lp~~~kN~~tg~~L 23 (60)
|-+|-+|.|.+-.|++..++-
T Consensus 79 Gk~aHss~P~~G~NAi~~l~~ 99 (196)
T d1lfwa2 79 GQGAHASAPQVGKNSATFLAL 99 (196)
T ss_dssp CBCCBTTCGGGSBCHHHHHHH
T ss_pred EEECCccCcccCcCHHHHHHH
Confidence 677889999999999987754
No 10
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.70 E-value=51 Score=17.14 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.3
Q ss_pred eeeeeeccccchhh
Q 035465 33 YTMRAVGGTDELQA 46 (60)
Q Consensus 33 YTi~AV~Qddf~dv 46 (60)
||||.+..+|+.++
T Consensus 5 ~~IR~~~~~D~~~i 18 (157)
T d1i12a_ 5 FYIRRMEEGDLEQV 18 (157)
T ss_dssp EEEEECCGGGHHHH
T ss_pred cEEEeCCHHHHHHH
Confidence 79999999986544
Done!