Query 035469
Match_columns 62
No_of_seqs 94 out of 96
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 04:33:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ovx_A ATP-dependent CLP prote 27.4 22 0.00074 21.1 1.0 14 15-28 18-31 (67)
2 2ds5_A CLPX, ATP-dependent CLP 19.5 46 0.0016 18.4 1.3 14 15-28 11-24 (51)
3 2m0f_A Zinc finger and BTB dom 17.5 37 0.0013 13.3 0.4 13 15-27 2-14 (29)
4 2m0e_A Zinc finger and BTB dom 13.7 53 0.0018 12.7 0.4 12 16-27 3-14 (29)
5 1nui_A DNA primase/helicase; z 12.2 36 0.0012 22.2 -0.6 22 2-23 1-22 (255)
6 3jyw_9 60S ribosomal protein L 12.1 1.6E+02 0.0056 17.3 2.4 25 6-32 19-43 (72)
7 1jjd_A Metallothionein, SMTA; 11.7 23 0.00078 20.2 -1.4 20 7-26 20-40 (55)
8 2lvu_A Zinc finger and BTB dom 15.1 51 0.0018 12.9 0.0 12 16-27 3-14 (26)
9 1paa_A Yeast transcription fac 11.2 82 0.0028 12.4 0.7 12 16-27 3-14 (30)
10 1ard_A Yeast transcription fac 11.1 80 0.0027 12.2 0.6 12 16-27 3-14 (29)
No 1
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=27.41 E-value=22 Score=21.07 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.3
Q ss_pred cccccccccccccc
Q 035469 15 KRKCSMCARGFART 28 (62)
Q Consensus 15 ~~~~~~~~~~~~et 28 (62)
..+||+|.+...+.
T Consensus 18 ~~~CSFCGK~e~eV 31 (67)
T 1ovx_A 18 LLYCSFCGKSQHEV 31 (67)
T ss_dssp CCCCTTTCCCTTTS
T ss_pred CcEecCCCCCHHHH
Confidence 46899999866443
No 2
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=19.53 E-value=46 Score=18.36 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=10.1
Q ss_pred cccccccccccccc
Q 035469 15 KRKCSMCARGFART 28 (62)
Q Consensus 15 ~~~~~~~~~~~~et 28 (62)
..+||+|.+...+.
T Consensus 11 ~~~CSFCGk~~~ev 24 (51)
T 2ds5_A 11 LLYCSFCGKSQHEV 24 (51)
T ss_dssp CCBCTTTCCBTTTS
T ss_pred CcEecCCCCCHHHh
Confidence 35899999866443
No 3
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=17.46 E-value=37 Score=13.29 Aligned_cols=13 Identities=31% Similarity=0.789 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q 035469 15 KRKCSMCARGFAR 27 (62)
Q Consensus 15 ~~~~~~~~~~~~e 27 (62)
..+|+.|.+.+..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 3578888776643
No 4
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=13.75 E-value=53 Score=12.70 Aligned_cols=12 Identities=33% Similarity=0.982 Sum_probs=8.3
Q ss_pred cccccccccccc
Q 035469 16 RKCSMCARGFAR 27 (62)
Q Consensus 16 ~~~~~~~~~~~e 27 (62)
.+|+.|.+.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 468888877653
No 5
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=12.21 E-value=36 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.9
Q ss_pred cchhHHHHHhhCCccccccccc
Q 035469 2 MDHEHEEAQRKGGKRKCSMCAR 23 (62)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (62)
||.|+++.-....+..|+.|..
T Consensus 1 ~~~~~~~~~~~~~~~~CP~Cg~ 22 (255)
T 1nui_A 1 MDNSHDSDSVFLYHIPCDNCGS 22 (255)
T ss_dssp ---------CEEEEECCSSSCC
T ss_pred CCcccccccceecCCcCCCCCC
Confidence 6788887766667778888864
No 6
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=12.07 E-value=1.6e+02 Score=17.34 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=18.4
Q ss_pred HHHHHhhCCccccccccccccccccCC
Q 035469 6 HEEAQRKGGKRKCSMCARGFARTKKKG 32 (62)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~et~srG 32 (62)
-|+.|+ -|..|+.|....++..+-|
T Consensus 19 ie~~q~--~ky~C~fCgk~~vkR~a~G 43 (72)
T 3jyw_9 19 LEIQQH--ARYDCSFCGKKTVKRGAAG 43 (72)
T ss_dssp HHHHHH--SCBCCSSCCSSCBSBCSSS
T ss_pred HHHHhc--cCccCCCCCCceeEecCCC
Confidence 445454 4789999999888877665
No 7
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=11.70 E-value=23 Score=20.21 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=15.2
Q ss_pred HHHHhhCCccccc-ccccccc
Q 035469 7 EEAQRKGGKRKCS-MCARGFA 26 (62)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~ 26 (62)
+||.+++||..|| -|++.-.
T Consensus 20 ~eai~~dGK~YCSe~Ca~gH~ 40 (55)
T 1jjd_A 20 SKAIDRNGLYYCSEACADGHT 40 (55)
T ss_dssp TTSEESSSCEESSHHHHHTSC
T ss_pred HHhhhcCCeEEehHHHHccCC
Confidence 5788899999994 5776543
No 8
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=15.13 E-value=51 Score=12.89 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=8.2
Q ss_pred cccccccccccc
Q 035469 16 RKCSMCARGFAR 27 (62)
Q Consensus 16 ~~~~~~~~~~~e 27 (62)
-+|+.|.+.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 367888777654
No 9
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=11.25 E-value=82 Score=12.38 Aligned_cols=12 Identities=42% Similarity=1.143 Sum_probs=8.3
Q ss_pred cccccccccccc
Q 035469 16 RKCSMCARGFAR 27 (62)
Q Consensus 16 ~~~~~~~~~~~e 27 (62)
.+|+.|.+.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 468888876643
No 10
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=11.07 E-value=80 Score=12.23 Aligned_cols=12 Identities=50% Similarity=1.104 Sum_probs=8.2
Q ss_pred cccccccccccc
Q 035469 16 RKCSMCARGFAR 27 (62)
Q Consensus 16 ~~~~~~~~~~~e 27 (62)
.+|+.|.+.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 468888776643
Done!