Query 035469
Match_columns 62
No_of_seqs 94 out of 96
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 04:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035469.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035469hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dlqa1 g.37.1.1 (A:93-118) GL 27.8 5.3 0.00039 19.2 -0.2 13 16-28 3-15 (26)
2 d1znfa_ g.37.1.1 (A:) XFIN, th 17.5 19 0.0014 17.1 0.6 12 17-28 2-13 (26)
3 d1jj2y_ g.41.8.1 (Y:) Ribosoma 14.4 40 0.0029 18.8 1.7 25 6-32 20-44 (73)
4 d2ds5a1 g.39.1.11 (A:11-48) Cl 13.4 32 0.0023 17.0 0.9 14 17-30 3-16 (38)
5 d1akya2 g.41.2.1 (A:131-168) M 12.3 24 0.0018 17.3 0.2 13 14-26 1-13 (38)
6 d1e4va2 g.41.2.1 (A:122-156) M 12.1 23 0.0017 17.0 0.1 13 14-26 1-13 (35)
7 d1vqoz1 g.41.8.1 (Z:10-82) Rib 12.0 52 0.0038 18.3 1.7 25 6-32 20-44 (73)
8 d2co8a2 g.39.1.3 (A:8-43) Nedd 10.9 30 0.0022 17.1 0.3 15 10-24 3-17 (36)
9 d1v87a_ g.44.1.1 (A:) Deltex p 10.9 80 0.0059 16.7 2.2 16 12-27 79-94 (114)
10 d1zina2 g.41.2.1 (A:126-160) M 10.7 28 0.002 16.8 0.1 13 14-26 1-13 (35)
No 1
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.84 E-value=5.3 Score=19.18 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.5
Q ss_pred ccccccccccccc
Q 035469 16 RKCSMCARGFART 28 (62)
Q Consensus 16 ~~~~~~~~~~~et 28 (62)
.|||.|.|.+.+.
T Consensus 3 ykcsscsqqfmqk 15 (26)
T d2dlqa1 3 YKCSSCSQQFMQK 15 (26)
T ss_dssp EECSSSCCEESSH
T ss_pred CcccHHHHHHHHH
Confidence 5899999988754
No 2
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=17.46 E-value=19 Score=17.09 Aligned_cols=12 Identities=42% Similarity=1.168 Sum_probs=10.2
Q ss_pred cccccccccccc
Q 035469 17 KCSMCARGFART 28 (62)
Q Consensus 17 ~~~~~~~~~~et 28 (62)
||..|.|.++|.
T Consensus 2 kcglcersfvek 13 (26)
T d1znfa_ 2 KCGLCERSFVEK 13 (26)
T ss_dssp BCSSSCCBCSSH
T ss_pred cccchHHHHHHH
Confidence 799999998874
No 3
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=14.40 E-value=40 Score=18.80 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHhhCCccccccccccccccccCC
Q 035469 6 HEEAQRKGGKRKCSMCARGFARTKKKG 32 (62)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~et~srG 32 (62)
-|..|+ .|.+|+.|.+..++-..-|
T Consensus 20 ie~~q~--~ky~Cp~Cgk~~vkR~a~G 44 (73)
T d1jj2y_ 20 VEIKHK--KKHKCPVCGFKKLKRAGTG 44 (73)
T ss_dssp HHHHHH--SCBCCSSSCCSCEEEEETT
T ss_pred HHHHhc--CCccCCCCCCCceEEEEEE
Confidence 455555 4789999998888776665
No 4
>d2ds5a1 g.39.1.11 (A:11-48) ClpX chaperone zinc binding domain {Escherichia coli [TaxId: 562]}
Probab=13.38 E-value=32 Score=17.00 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=10.5
Q ss_pred cccccccccccccc
Q 035469 17 KCSMCARGFARTKK 30 (62)
Q Consensus 17 ~~~~~~~~~~et~s 30 (62)
.||+|.+...+.+.
T Consensus 3 ~CSFCgk~~~eV~~ 16 (38)
T d2ds5a1 3 YCSFCGKSQHEVRK 16 (38)
T ss_dssp BCTTTCCBTTTSSC
T ss_pred EeeCCCCCHHHHHH
Confidence 69999987766554
No 5
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.28 E-value=24 Score=17.30 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.5
Q ss_pred Ccccccccccccc
Q 035469 14 GKRKCSMCARGFA 26 (62)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (62)
|.|.|+-|.+++.
T Consensus 1 GRr~C~~cG~~Yh 13 (38)
T d1akya2 1 GRLIHPASGRSYH 13 (38)
T ss_dssp TEEECTTTCCEEE
T ss_pred CccCCcCccchhh
Confidence 6789999998754
No 6
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=12.15 E-value=23 Score=17.05 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=10.7
Q ss_pred Ccccccccccccc
Q 035469 14 GKRKCSMCARGFA 26 (62)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (62)
|.|.|+-|.+++.
T Consensus 1 GRr~c~~cG~~Yh 13 (35)
T d1e4va2 1 GRRVHAPSGRVYH 13 (35)
T ss_dssp TEEEETTTTEEEE
T ss_pred CccCCcCcCChhh
Confidence 6789999998764
No 7
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=12.00 E-value=52 Score=18.30 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.1
Q ss_pred HHHHHhhCCccccccccccccccccCC
Q 035469 6 HEEAQRKGGKRKCSMCARGFARTKKKG 32 (62)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~et~srG 32 (62)
-|+.|+ .|.+|+.|....+.-..-|
T Consensus 20 ie~~q~--~ky~Cp~Cgk~~vkR~a~G 44 (73)
T d1vqoz1 20 IESEMN--EDHACPNCGEDRVDRQGTG 44 (73)
T ss_dssp HHHHHH--SCBCCSSSSCSCEEEEETT
T ss_pred HHHHHh--CCccCCCCCCceeEEEEEE
Confidence 455555 4789999998887776655
No 8
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.91 E-value=30 Score=17.08 Aligned_cols=15 Identities=27% Similarity=0.727 Sum_probs=12.1
Q ss_pred HhhCCcccccccccc
Q 035469 10 QRKGGKRKCSMCARG 24 (62)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (62)
|+.|+..+|..|.+.
T Consensus 3 ~~~g~~~~C~~C~K~ 17 (36)
T d2co8a2 3 QEAGAGDLCALCGEH 17 (36)
T ss_dssp CCCCSSCBCSSSCCB
T ss_pred ccCCCCCcccccCCE
Confidence 467888999999864
No 9
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.89 E-value=80 Score=16.66 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=11.6
Q ss_pred hCCccccccccccccc
Q 035469 12 KGGKRKCSMCARGFAR 27 (62)
Q Consensus 12 ~~~~~~~~~~~~~~~e 27 (62)
..|+.+|.+|.++..+
T Consensus 79 ~~~~~~CP~CR~~~~~ 94 (114)
T d1v87a_ 79 KDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CSSCCBCTTTCCBSSS
T ss_pred cCCCCccccccchhcc
Confidence 4577899999766533
No 10
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=10.74 E-value=28 Score=16.79 Aligned_cols=13 Identities=31% Similarity=0.912 Sum_probs=10.6
Q ss_pred Ccccccccccccc
Q 035469 14 GKRKCSMCARGFA 26 (62)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (62)
|.|.|+-|.+++.
T Consensus 1 GRr~C~~CG~~Yh 13 (35)
T d1zina2 1 GRRICRNCGATYH 13 (35)
T ss_dssp TEEEETTTCCEEE
T ss_pred CccCCcCcCchhc
Confidence 6788999998764
Done!