Query 035470
Match_columns 62
No_of_seqs 112 out of 962
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 04:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_A SRF, serum response fac 100.0 2.1E-35 7.2E-40 177.0 0.3 62 1-62 10-71 (92)
2 1mnm_A Protein (MCM1 transcrip 100.0 3.8E-35 1.3E-39 178.1 1.3 62 1-62 16-77 (100)
3 1egw_A MADS box transcription 100.0 5.1E-35 1.7E-39 170.4 0.7 60 2-61 1-60 (77)
4 1k6o_B SRF, serum response fac 100.0 6.8E-35 2.3E-39 177.7 0.5 62 1-62 9-70 (103)
5 3p57_A Myocyte-specific enhanc 100.0 1.7E-34 5.8E-39 172.5 0.5 61 2-62 1-61 (90)
6 3izc_Z 60S ribosomal protein R 66.7 4.3 0.00015 25.7 2.6 28 33-60 3-34 (155)
7 4a17_T RPL24, 60S ribosomal pr 66.3 4.2 0.00014 25.8 2.5 28 33-60 5-36 (158)
8 3j21_V 50S ribosomal protein L 63.2 4.6 0.00016 22.1 2.0 27 34-60 5-35 (66)
9 3iz5_Z 60S ribosomal protein L 63.1 4.8 0.00016 25.7 2.3 28 33-60 5-36 (162)
10 1vq8_U 50S ribosomal protein L 61.7 5.1 0.00017 21.9 2.0 27 34-60 4-34 (66)
11 2zkr_u 60S ribosomal protein L 61.6 4.6 0.00016 25.6 2.0 28 33-60 3-34 (157)
12 3nrf_A APAG protein; structura 51.3 5.6 0.00019 23.8 1.1 42 11-57 21-62 (106)
13 2ky6_A Mediator of RNA polymer 38.7 24 0.00082 22.5 2.7 20 36-55 116-135 (166)
14 3sk2_A EHPR; antibiotic resist 37.2 29 0.001 18.9 2.7 19 43-61 114-132 (132)
15 1wmh_B Partitioning defective- 36.5 27 0.00093 19.8 2.4 55 6-60 7-65 (86)
16 2phn_A F420-0:gamma-glutamyl l 31.5 2.4 8.2E-05 28.6 -3.1 27 34-60 138-164 (254)
17 2lx9_A Ferrous iron transport 31.2 66 0.0023 17.3 3.5 32 25-56 19-50 (83)
18 1qto_A Bleomycin-binding prote 30.7 43 0.0015 18.0 2.6 19 43-61 104-122 (122)
19 3qhy_B Beta-lactamase inhibito 30.3 43 0.0015 21.5 2.9 23 36-60 67-89 (282)
20 3hvz_A Uncharacterized protein 29.0 52 0.0018 17.9 2.7 18 44-61 7-24 (78)
21 2k5l_A FEOA; structure, NESG, 28.8 70 0.0024 16.9 4.8 31 26-56 22-52 (81)
22 2k5f_A Ferrous iron transport 27.6 89 0.003 17.7 4.5 30 26-55 21-50 (105)
23 3uh9_A Metallothiol transferas 25.8 71 0.0024 17.5 3.0 19 43-61 102-120 (145)
24 2k4y_A FEOA-like protein; GFT 25.6 82 0.0028 16.9 3.2 30 26-55 25-54 (86)
25 2kkc_A Sequestosome-1; P62, PB 24.8 70 0.0024 18.5 2.9 36 25-60 44-80 (102)
26 3fg8_A Uncharacterized protein 24.0 58 0.002 17.0 2.3 22 36-57 16-37 (118)
27 4a4f_A SurviVal of motor neuro 23.9 51 0.0017 17.0 2.0 14 42-55 13-26 (64)
28 3ct8_A Protein BH2160, putativ 23.5 76 0.0026 17.7 2.9 17 44-60 130-146 (146)
29 1p0z_A Sensor kinase CITA; tra 23.3 45 0.0016 18.8 1.9 33 27-60 36-68 (131)
30 2h3j_A Hypothetical protein PA 22.8 86 0.003 15.9 3.8 29 25-53 20-48 (75)
31 1twu_A Hypothetical protein YY 22.6 66 0.0022 17.5 2.4 17 46-62 119-135 (139)
32 3ey7_A Biphenyl-2,3-DIOL 1,2-d 22.6 74 0.0025 16.7 2.6 19 43-61 113-131 (133)
33 2p7o_A Glyoxalase family prote 22.1 85 0.0029 16.6 2.8 18 44-61 106-123 (133)
34 3phz_A Ricin B-related lectin; 21.8 32 0.0011 23.5 1.1 15 31-45 228-242 (286)
35 3vhj_A BFPC; type IV pilus bio 21.7 36 0.0012 21.8 1.3 35 26-60 29-63 (172)
36 1r9c_A Glutathione transferase 21.7 94 0.0032 16.8 3.0 18 44-61 106-123 (139)
37 3e19_A FEOA; transcriptional r 21.5 90 0.0031 16.1 2.8 27 26-52 25-51 (77)
38 4d9s_A UVB-resistance protein 21.0 76 0.0026 21.2 2.9 26 35-60 71-96 (406)
39 1q27_A Putative nudix hydrolas 20.8 1.3E+02 0.0044 17.1 3.9 48 1-55 1-49 (171)
40 3s6w_A Tudor domain-containing 20.5 74 0.0025 15.6 2.1 14 42-55 6-19 (54)
41 2zvv_Y Cyclin-dependent kinase 20.4 23 0.00079 16.0 0.1 12 15-26 15-26 (26)
42 3rmq_A Uncharacterized protein 20.0 30 0.001 20.9 0.6 13 33-45 30-42 (116)
No 1
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=2.1e-35 Score=177.00 Aligned_cols=62 Identities=39% Similarity=0.674 Sum_probs=60.8
Q ss_pred CCccceeeEEeccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCCCC
Q 035470 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSW 62 (62)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~~~ 62 (62)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|+||++
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~ 71 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 71 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGG
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 2
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.8e-35 Score=178.11 Aligned_cols=62 Identities=45% Similarity=0.726 Sum_probs=61.0
Q ss_pred CCccceeeEEeccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCCCC
Q 035470 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSW 62 (62)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~~~ 62 (62)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|+||++
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~ 77 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTT
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999975
No 3
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=5.1e-35 Score=170.44 Aligned_cols=60 Identities=55% Similarity=0.956 Sum_probs=59.2
Q ss_pred CccceeeEEeccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCCC
Q 035470 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~~ 61 (62)
||+||+|++|+|+.+|++||+||++||+|||+|||+||||+||+|||+|+|++|+|+|++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~ 60 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999986
No 4
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.8e-35 Score=177.72 Aligned_cols=62 Identities=39% Similarity=0.674 Sum_probs=60.7
Q ss_pred CCccceeeEEeccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCCCC
Q 035470 1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSW 62 (62)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~~~ 62 (62)
|||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||||||+|+|++|+|+||++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~ 70 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 70 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGG
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccH
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.98 E-value=1.7e-34 Score=172.51 Aligned_cols=61 Identities=54% Similarity=0.935 Sum_probs=59.6
Q ss_pred CccceeeEEeccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCCCC
Q 035470 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSW 62 (62)
Q Consensus 2 gR~ki~ik~I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~~~ 62 (62)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||+|+|++|+|+||++
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~ 61 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCH
Confidence 8999999999999999999999999999999999999999999999999999999999863
No 6
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=66.73 E-value=4.3 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=22.4
Q ss_pred hhcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 33 HEISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 33 ~ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
.|+|..||.+| ..+.+..||++|.|+|.
T Consensus 3 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 34 (155)
T 3izc_Z 3 VEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNS 34 (155)
T ss_dssp CEECTTTCSEECTTCCEEEECTTCCEEEESSH
T ss_pred eeEecCcCCcccCCCCeEEEecCCCEEEEEcH
Confidence 36788899888 46666789999999984
No 7
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=66.31 E-value=4.2 Score=25.82 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.4
Q ss_pred hhcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 33 HEISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 33 ~ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
.|+|..||.+| ..+.+..||++|.|+|.
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcss 36 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTK 36 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESCH
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEcH
Confidence 36788899888 46666789999999984
No 8
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.15 E-value=4.6 Score=22.11 Aligned_cols=27 Identities=7% Similarity=0.374 Sum_probs=21.2
Q ss_pred hcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 34 EISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 34 ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
|+|..||.+| ....+..||++|.|+|.
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 35 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVRNDGRVLFFCSR 35 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEECSSSCEEEESSH
T ss_pred eEecCcCCcccCCCCeEEEecCCcEEEEECH
Confidence 6777788877 46666789999999984
No 9
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=63.06 E-value=4.8 Score=25.67 Aligned_cols=28 Identities=7% Similarity=0.341 Sum_probs=22.2
Q ss_pred hhcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 33 HEISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 33 ~ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
.|+|..||.+| ..+.+..||++|.|+|.
T Consensus 5 ~e~CsFcG~~IyPG~G~~fVr~Dgkvf~Fcss 36 (162)
T 3iz5_Z 5 TELCRFSGQKIYPGKGIRFIRADSQVFLFANS 36 (162)
T ss_dssp CEECTTTCSEECSSCSEEEECTTSCEEEECSH
T ss_pred EEEecCcCCcccCCCCeEEEecCCCEEEEECH
Confidence 36788899888 35666779999999984
No 10
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=61.73 E-value=5.1 Score=21.92 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=20.5
Q ss_pred hcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 34 EISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 34 ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
|+|..||.+| ....+..||++|.|+|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 34 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCSS 34 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESCH
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEECH
Confidence 6777788777 45556779999999974
No 11
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=61.61 E-value=4.6 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=21.5
Q ss_pred hhcceecCceE----EEEEEcCCCCeEEecCC
Q 035470 33 HEISVLCDAEV----ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 33 ~ELs~Lc~~~v----~~iv~~~~g~~~~~~s~ 60 (62)
.|+|..||.+| .++.+..||++|.|+|+
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcss 34 (157)
T 2zkr_u 3 VELCSFSGYKIYPGHGRRYARTDGKVFQFLNA 34 (157)
T ss_dssp -CBCTTTCCBCCTTCCEEEECTTSCEEEESSH
T ss_pred eeeecCcCCcccCCCceEEEeeCCcEEEEecH
Confidence 36788888887 45666789999999984
No 12
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=51.28 E-value=5.6 Score=23.77 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=33.5
Q ss_pred eccccCcceehhhccchhhhhhhhcceecCceEEEEEEcCCCCeEEe
Q 035470 11 IENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEY 57 (62)
Q Consensus 11 I~~~~~R~~tf~KR~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~ 57 (62)
+.++...+.||.-.-..|.++.-+|+.+ |++.|+|+|+-|..
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEe
Confidence 4555666778888888899999999966 79999999987754
No 13
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=38.71 E-value=24 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.791 Sum_probs=16.1
Q ss_pred ceecCceEEEEEEcCCCCeE
Q 035470 36 SVLCDAEVALIVFSTKGKLF 55 (62)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~ 55 (62)
+.-|+++|-+++|+++-+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 34589999999999877665
No 14
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=37.17 E-value=29 Score=18.92 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=15.1
Q ss_pred EEEEEEcCCCCeEEecCCC
Q 035470 43 VALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~ 61 (62)
..+.+.+|+|..+.+.+++
T Consensus 114 ~~~~~~DPdGn~iel~~~d 132 (132)
T 3sk2_A 114 RTFLISDPDGHIIRVCPLD 132 (132)
T ss_dssp EEEEEECTTCCEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCC
Confidence 3467779999999988875
No 15
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=36.55 E-value=27 Score=19.83 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=39.5
Q ss_pred eeeEEeccccCcceehhh----ccchhhhhhhhcceecCceEEEEEEcCCCCeEEecCC
Q 035470 6 VQLKRIENKINRQVTFSK----RRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 6 i~ik~I~~~~~R~~tf~K----R~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
+++|-=-+..-|+-++.+ .-..+..+...+.-|.+.++.+--.+++|.+..++++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnD 65 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTND 65 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSH
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCH
Confidence 444444455566666643 3456888888888898888777777889999998875
No 16
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=31.47 E-value=2.4 Score=28.61 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=21.1
Q ss_pred hcceecCceEEEEEEcCCCCeEEecCC
Q 035470 34 EISVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 34 ELs~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
+|.-.+|++|.+||++++|+++..+.+
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~ 164 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVV 164 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCc
Confidence 355678999999999999887766543
No 17
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=31.20 E-value=66 Score=17.34 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=26.4
Q ss_pred cchhhhhhhhcceecCceEEEEEEcCCCCeEE
Q 035470 25 RSGLLKKAHEISVLCDAEVALIVFSTKGKLFE 56 (62)
Q Consensus 25 ~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~ 56 (62)
...+.++..|+-+..|++|.++-..|-|.+..
T Consensus 19 ~~~~~rrL~~mGl~pG~~V~Vi~~ap~ggPi~ 50 (83)
T 2lx9_A 19 SPAYRQKLLSLGMLPGSSFNVVRVAPLGDPIH 50 (83)
T ss_dssp CHHHHHHHHHSSCCSSSEEEEEEECTTTCCEE
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCCCCCcEE
Confidence 35788899999999999999999988654443
No 18
>1qto_A Bleomycin-binding protein; arm-exchange, antibiotic inhibitor; 1.50A {Streptomyces verticillus} SCOP: d.32.1.2 PDB: 1jie_A* 1jif_A
Probab=30.66 E-value=43 Score=17.99 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.9
Q ss_pred EEEEEEcCCCCeEEecCCC
Q 035470 43 VALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~ 61 (62)
..+.+.+|+|..+.+.+++
T Consensus 104 ~~~~~~DPdG~~iel~~~~ 122 (122)
T 1qto_A 104 REFAVRDPAGNCVHFTAGE 122 (122)
T ss_dssp EEEEEECTTSCEEEEEECC
T ss_pred cEEEEECCCCCEEEEecCC
Confidence 3456779999999988764
No 19
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=30.29 E-value=43 Score=21.53 Aligned_cols=23 Identities=9% Similarity=0.313 Sum_probs=13.8
Q ss_pred ceecCceEEEEEEcCCCCeEEecCC
Q 035470 36 SVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
.+-|+....+++ . +|++|.|++.
T Consensus 67 ~ia~G~~hs~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 67 AIAAGNYHSLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp EEEECSSEEEEE-E-TTEEEEEECC
T ss_pred EEEeCCCEEEEE-E-CCEEEEeeCC
Confidence 455666666655 3 6667666654
No 20
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=28.97 E-value=52 Score=17.87 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.4
Q ss_pred EEEEEcCCCCeEEecCCC
Q 035470 44 ALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~ 61 (62)
-+.||.|+|.++.+...+
T Consensus 7 ~i~v~tP~G~~~~lp~Ga 24 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGS 24 (78)
T ss_dssp EEEEECTTSCEEEEETTC
T ss_pred eEEEECCCCCEEEecCCC
Confidence 367889999999987654
No 21
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=28.83 E-value=70 Score=16.90 Aligned_cols=31 Identities=10% Similarity=0.236 Sum_probs=25.4
Q ss_pred chhhhhhhhcceecCceEEEEEEcCCCCeEE
Q 035470 26 SGLLKKAHEISVLCDAEVALIVFSTKGKLFE 56 (62)
Q Consensus 26 ~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~ 56 (62)
..+.++..|+-+..|++|.++-..|-|.++.
T Consensus 22 ~~~~~rL~~lGl~pG~~v~V~~~~p~~gpi~ 52 (81)
T 2k5l_A 22 GALKRRIMDMGITRGCEIYIRKVAPLGDPIQ 52 (81)
T ss_dssp SHHHHHHHHHTCCTTCEEEEEEECTTSCCEE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCEE
Confidence 5688899999999999999998888554443
No 22
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=27.59 E-value=89 Score=17.67 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=25.0
Q ss_pred chhhhhhhhcceecCceEEEEEEcCCCCeE
Q 035470 26 SGLLKKAHEISVLCDAEVALIVFSTKGKLF 55 (62)
Q Consensus 26 ~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~ 55 (62)
..+.++..|+-+..|++|.++-..|-|.++
T Consensus 21 ~~l~rrL~~lGl~pG~~V~Vv~~~P~ggpi 50 (105)
T 2k5f_A 21 PAVRRRLMDLGLVRGAKLKVLRFAPLGDPI 50 (105)
T ss_dssp HHHHHHHHHHTCSTTCEEEEEEECSSSCSE
T ss_pred HHHHHHHHHcCCCCCCEEEEEEECCCCCCE
Confidence 568889999999999999999888755443
No 23
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=25.76 E-value=71 Score=17.46 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.1
Q ss_pred EEEEEEcCCCCeEEecCCC
Q 035470 43 VALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~ 61 (62)
..+.+.+|+|..+.+.+++
T Consensus 102 ~~~~~~DPdG~~iel~~~~ 120 (145)
T 3uh9_A 102 RSLYFTDPDGHKFEFHTGT 120 (145)
T ss_dssp CEEEEECTTCCEEEEESSC
T ss_pred eEEEEEcCCCCEEEEEcCc
Confidence 3456789999999998774
No 24
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=25.59 E-value=82 Score=16.86 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=24.9
Q ss_pred chhhhhhhhcceecCceEEEEEEcCCCCeE
Q 035470 26 SGLLKKAHEISVLCDAEVALIVFSTKGKLF 55 (62)
Q Consensus 26 ~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~ 55 (62)
..+.++..|+-+..|++|.++-..|-|.++
T Consensus 25 ~~~~~rL~~mGl~pG~~V~V~~~~p~~gpi 54 (86)
T 2k4y_A 25 SKVRRKIMDMGIVRGTEIYIEGKAPMGDPI 54 (86)
T ss_dssp SSHHHHHHHHTCCTTCEEEEEEECTTSCSE
T ss_pred HHHHHHHHHCCCCCCCEEEEEEeCCCCCCE
Confidence 568889999999999999999888854443
No 25
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=24.84 E-value=70 Score=18.46 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=28.4
Q ss_pred cchhhhhhhhc-ceecCceEEEEEEcCCCCeEEecCC
Q 035470 25 RSGLLKKAHEI-SVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 25 ~~GL~KKa~EL-s~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
-..|..|..++ +-|-+..+-+--.+++|.+.+++|+
T Consensus 44 ~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 44 CERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp HHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSH
T ss_pred HHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCH
Confidence 46788899888 5677777666666899999999986
No 26
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=24.04 E-value=58 Score=16.96 Aligned_cols=22 Identities=0% Similarity=0.163 Sum_probs=17.3
Q ss_pred ceecCceEEEEEEcCCCCeEEe
Q 035470 36 SVLCDAEVALIVFSTKGKLFEY 57 (62)
Q Consensus 36 s~Lc~~~v~~iv~~~~g~~~~~ 57 (62)
+++..+..++++++++|.+..+
T Consensus 16 ~il~~~~~~i~~~D~~g~i~~~ 37 (118)
T 3fg8_A 16 NLYFQGGLGFMALDEDLRIIYV 37 (118)
T ss_dssp CSSSCTTCEEEEECTTCBEEEE
T ss_pred HHHhhCCceEEEECCCCeEEEE
Confidence 5667778889999999987654
No 27
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=23.86 E-value=51 Score=16.96 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.5
Q ss_pred eEEEEEEcCCCCeE
Q 035470 42 EVALIVFSTKGKLF 55 (62)
Q Consensus 42 ~v~~iv~~~~g~~~ 55 (62)
+.|+-.|+.+|+.|
T Consensus 13 d~c~A~~s~Dg~wY 26 (64)
T 4a4f_A 13 DKCMAVWSEDGQCY 26 (64)
T ss_dssp CEEEEECTTTSSEE
T ss_pred CEEEEEECCCCCEE
Confidence 56777888888766
No 28
>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resis protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125}
Probab=23.47 E-value=76 Score=17.72 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=13.5
Q ss_pred EEEEEcCCCCeEEecCC
Q 035470 44 ALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 44 ~~iv~~~~g~~~~~~s~ 60 (62)
.+.+.+|+|..+.+.+|
T Consensus 130 ~~~~~DPdG~~iel~~p 146 (146)
T 3ct8_A 130 AVFCEDPNRIKVEIVAP 146 (146)
T ss_dssp EEEEECTTCCEEEEECC
T ss_pred EEEEECCCCCEEEEEeC
Confidence 45677999999988765
No 29
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=23.27 E-value=45 Score=18.75 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=24.6
Q ss_pred hhhhhhhhcceecCceEEEEEEcCCCCeEEecCC
Q 035470 27 GLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 27 GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
.|-..+.++.-..|++ .+++.+++|..+..+.+
T Consensus 36 ~l~~~~~~~~~~~~~~-~i~v~d~~G~~~a~~~~ 68 (131)
T 1p0z_A 36 RIKALIDPMRSFSDAT-YITVGDASGQRLYHVNP 68 (131)
T ss_dssp HHHHHHHHHHHHSCCS-EEEEEETTSBEEECSSG
T ss_pred HHHHHHHHHHHhcCCC-EEEEEcCCCcEEEecCh
Confidence 3455566777788999 78888999988876644
No 30
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=22.82 E-value=86 Score=15.90 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=24.0
Q ss_pred cchhhhhhhhcceecCceEEEEEEcCCCC
Q 035470 25 RSGLLKKAHEISVLCDAEVALIVFSTKGK 53 (62)
Q Consensus 25 ~~GL~KKa~ELs~Lc~~~v~~iv~~~~g~ 53 (62)
...+.++..|+-+..|+.|.++-..|-|.
T Consensus 20 ~~~~~~rL~~lGl~~G~~v~v~~~~p~~~ 48 (75)
T 2h3j_A 20 SNGYRQRLFSMGLLPGAALRVVRIAPLGD 48 (75)
T ss_dssp CTTHHHHHHHHTCCTTCEEEEEECCTTSC
T ss_pred CHHHHHHHHHcCCCCCCEEEEEEECCCCC
Confidence 35688899999999999999988887443
No 31
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=22.61 E-value=66 Score=17.51 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=13.9
Q ss_pred EEEcCCCCeEEecCCCC
Q 035470 46 IVFSTKGKLFEYSTDSW 62 (62)
Q Consensus 46 iv~~~~g~~~~~~s~~~ 62 (62)
.+.+|+|..+.+.++.|
T Consensus 119 ~~~DPdG~~iel~~~~~ 135 (139)
T 1twu_A 119 TIEDPDGWRIVFMNSKG 135 (139)
T ss_dssp EEECTTCCEEEEESSCC
T ss_pred EEECCCCCEEEEEEcCC
Confidence 47799999999887754
No 32
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=22.57 E-value=74 Score=16.67 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=14.5
Q ss_pred EEEEEEcCCCCeEEecCCC
Q 035470 43 VALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 43 v~~iv~~~~g~~~~~~s~~ 61 (62)
..+.+.+|+|..+.+.++.
T Consensus 113 ~~~~~~DPdG~~iel~~~~ 131 (133)
T 3ey7_A 113 TSFYFRDPDGNLIEVSTYS 131 (133)
T ss_dssp EEEEEECTTCCEEEEEESC
T ss_pred EEEEEECCCCCEEEEEecC
Confidence 4556779999999887753
No 33
>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A
Probab=22.11 E-value=85 Score=16.65 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=14.2
Q ss_pred EEEEEcCCCCeEEecCCC
Q 035470 44 ALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~ 61 (62)
.+.+.+|+|..+.+.++.
T Consensus 106 ~~~~~DPdG~~iel~~~~ 123 (133)
T 2p7o_A 106 SIYFYDFDNHLFELHAGT 123 (133)
T ss_dssp EEEEECSSSCEEEEECSS
T ss_pred EEEEECCCCCEEEEEcCC
Confidence 456679999999988764
No 34
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus}
Probab=21.85 E-value=32 Score=23.51 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=11.7
Q ss_pred hhhhcceecCceEEE
Q 035470 31 KAHEISVLCDAEVAL 45 (62)
Q Consensus 31 Ka~ELs~Lc~~~v~~ 45 (62)
||.++.+|||+-..+
T Consensus 228 ~a~g~~~~~g~~~~~ 242 (286)
T 3phz_A 228 KANGFALLCGLMFGS 242 (286)
T ss_dssp CCCSCEECCEEEEEE
T ss_pred ccccceEEEEEEEec
Confidence 789999999965444
No 35
>3vhj_A BFPC; type IV pilus biogenesis, BFPD, membrane, membrane protein; 1.90A {Escherichia coli}
Probab=21.73 E-value=36 Score=21.77 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=30.3
Q ss_pred chhhhhhhhcceecCceEEEEEEcCCCCeEEecCC
Q 035470 26 SGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 26 ~GL~KKa~ELs~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
.+.++.|.+....-+.|+..|+..+...-|.|++.
T Consensus 29 ~~~mkEAr~~g~~~~~dlvai~~~~~~~Q~G~~~k 63 (172)
T 3vhj_A 29 ETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDK 63 (172)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEEEETTEEEEEECCG
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCCceEEeEEec
Confidence 57799999999998999999988888888888764
No 36
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding, antibiotic resist transferase; 1.83A {Mesorhizobium loti} SCOP: d.32.1.2
Probab=21.67 E-value=94 Score=16.83 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=14.1
Q ss_pred EEEEEcCCCCeEEecCCC
Q 035470 44 ALIVFSTKGKLFEYSTDS 61 (62)
Q Consensus 44 ~~iv~~~~g~~~~~~s~~ 61 (62)
.+.+.+|+|..+.+.++.
T Consensus 106 ~~~~~DPdG~~iel~~~~ 123 (139)
T 1r9c_A 106 SIYFYDDDNHMFELHTGT 123 (139)
T ss_dssp EEEEECTTSCEEEEECCC
T ss_pred EEEEECCCCCEEEEEeCC
Confidence 456779999999988753
No 37
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=21.46 E-value=90 Score=16.09 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=22.3
Q ss_pred chhhhhhhhcceecCceEEEEEEcCCC
Q 035470 26 SGLLKKAHEISVLCDAEVALIVFSTKG 52 (62)
Q Consensus 26 ~GL~KKa~ELs~Lc~~~v~~iv~~~~g 52 (62)
..+.++..|+-+..|+++.++-..|.|
T Consensus 25 ~~~~~rL~~lGi~~G~~v~v~~~~p~g 51 (77)
T 3e19_A 25 HNARQKLVSMGLTPGATIQVLESHPMG 51 (77)
T ss_dssp HHHHHHHHTTTCSTTCEEEEEEC--CC
T ss_pred HHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 368899999999999999999888777
No 38
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=20.97 E-value=76 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=21.2
Q ss_pred cceecCceEEEEEEcCCCCeEEecCC
Q 035470 35 ISVLCDAEVALIVFSTKGKLFEYSTD 60 (62)
Q Consensus 35 Ls~Lc~~~v~~iv~~~~g~~~~~~s~ 60 (62)
..+-||....+.+...+|++|.|+..
T Consensus 71 ~~va~G~~ht~al~~~gg~v~~wG~n 96 (406)
T 4d9s_A 71 VSVTCGADHTVAYSQSGMEVYSWGWG 96 (406)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEECC
T ss_pred EEEEeCcceEEEEECCCCEEEEEcCC
Confidence 56779999888887777899999864
No 39
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=20.84 E-value=1.3e+02 Score=17.11 Aligned_cols=48 Identities=19% Similarity=0.134 Sum_probs=27.3
Q ss_pred CCccceeeEEeccccCcceehhhccch-hhhhhhhcceecCceEEEEEEcCCCCeE
Q 035470 1 MGRGRVQLKRIENKINRQVTFSKRRSG-LLKKAHEISVLCDAEVALIVFSTKGKLF 55 (62)
Q Consensus 1 mgR~ki~ik~I~~~~~R~~tf~KR~~G-L~KKa~ELs~Lc~~~v~~iv~~~~g~~~ 55 (62)
||...-++--|-|...+..-...|..- |+-.. ..-+++++++++|++.
T Consensus 1 ~~~~~~E~~~~~d~~~~~~g~~~r~~~~l~~~~-------~~~v~v~i~~~~~~vL 49 (171)
T 1q27_A 1 MGGVSDERLDLVNERDEVVGQILRTDPALRWER-------VRVVNAFLRNSQGQLW 49 (171)
T ss_dssp CCCCCSSEEEEESSSSCEEEEEESSCTTSCTTS-------CEEEEEEEEETTTEEE
T ss_pred CCcccceeeeeecCCCCEeceEEhhhhcccccc-------ceEEEEEEECCCCeEE
Confidence 777777777777777666554444432 22111 3334556666666554
No 40
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=20.53 E-value=74 Score=15.56 Aligned_cols=14 Identities=7% Similarity=0.410 Sum_probs=8.3
Q ss_pred eEEEEEEcCCCCeE
Q 035470 42 EVALIVFSTKGKLF 55 (62)
Q Consensus 42 ~v~~iv~~~~g~~~ 55 (62)
+.|+-.|+++|+.|
T Consensus 6 ~~c~A~~s~Dg~wY 19 (54)
T 3s6w_A 6 DECFALYWEDNKFY 19 (54)
T ss_dssp CEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEE
Confidence 45666666666554
No 41
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=20.42 E-value=23 Score=15.95 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=7.9
Q ss_pred cCcceehhhccc
Q 035470 15 INRQVTFSKRRS 26 (62)
Q Consensus 15 ~~R~~tf~KR~~ 26 (62)
.+|+.-|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 456777777763
No 42
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=20.03 E-value=30 Score=20.88 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=10.9
Q ss_pred hhcceecCceEEE
Q 035470 33 HEISVLCDAEVAL 45 (62)
Q Consensus 33 ~ELs~Lc~~~v~~ 45 (62)
.++..|||++|..
T Consensus 30 ~~ftaLCG~~VTp 42 (116)
T 3rmq_A 30 RPFTALCGETVTP 42 (116)
T ss_dssp CCEECTTSCEECC
T ss_pred CccccccCCeecC
Confidence 5789999999864
Done!