BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035481
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMN--LTHLRSLL 58
+M+ L LDLS N FSGEL + + SL TLDLS+NNF G + PN L+ L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 59 LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
L NN F+GK+ L + + L L++S N LSG IP +G+ S L L + N L+G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
+L + LE + L N + G IP
Sbjct: 461 ELMYVKTLE-----------------------TLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
N+L G IP I L NL L L N G IP +L R L +DL+ N NG IP+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 239 L 239
+
Sbjct: 558 M 558
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 120/267 (44%), Gaps = 51/267 (19%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
+K L L L+ N F+GE+ + C +L LDLS N+FYG + P + + + L SL L +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 62 NNFSGKMT-DGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG-LWVLLMSEN--------- 110
NNFSG++ D LL L+VL++S N+ SG++P + N S L L +S N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 111 ------------YLQ-----GSIPVQLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIY 153
YLQ G IP L N C E + ++
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELV---------------------SLH 424
Query: 154 LHNNAINGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPN 213
L N ++G IP + N L G IP ++ + L L+L N L G IP+
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484
Query: 214 QLCQLRKLGIMDLSHNRLNGPIPSCLG 240
L L + LS+NRL G IP +G
Sbjct: 485 GLSNCTNLNWISLSNNRLTGEIPKWIG 511
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 117/263 (44%), Gaps = 24/263 (9%)
Query: 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNN 62
EL++L LS N SG + + S L L L N G++ M + L +L+LD N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 63 NFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN 122
+ +G++ GL + T L +++SNN+L+G+IP WIG L +L +S N G+IP +LG+
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 123 LVCLEFIDI----------XXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXX 172
L ++D+ ++Y+ N+ + A
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 173 XXXXXXXXNKLFGRIPHQINEL-------------SNLHFLLLRGNYLQGRIPNQLCQLR 219
N+L R P I ++ FL + N L G IP ++ +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 220 KLGIMDLSHNRLNGPIPSCLGNV 242
L I++L HN ++G IP +G++
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDL 679
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 107/264 (40%), Gaps = 36/264 (13%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
+K L TL L N+ +GE+ + S C +L + LSNN G++ L +L L L N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL- 120
N+FSG + L L L+++ N +G IP + SG ++ N++ G V +
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 579
Query: 121 -----------GNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHN------------- 156
GNL LEF I H
Sbjct: 580 NDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 157 ----NAINGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIP 212
N ++G IP N + G IP ++ +L L+ L L N L GRIP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 213 NQLCQLRKLGIMDLSHNRLNGPIP 236
+ L L +DLS+N L+GPIP
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 31/253 (12%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
+ L LD+S N SG+ SR I S C L+ L++S+N F G + P + L L+ L L
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 277
Query: 61 NNNFSGKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
N F+G++ D L + L L++S N G +P + G+ S L L +S N G +P+
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 120 -LGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
L + L+ +D L N +G +P +
Sbjct: 338 TLLKMRGLKVLD-----------------------LSFNEFSGELPESLTNLSASLLTLD 374
Query: 179 -XXNKLFGRIPHQI--NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235
N G I + N + L L L+ N G+IP L +L + LS N L+G I
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 236 PSCLGNVSSWREV 248
PS LG++S R++
Sbjct: 435 PSSLGSLSKLRDL 447
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 34/255 (13%)
Query: 1 EMKELITLDLSRNNFSGE--LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLL 58
++ L LDLS N+ SG + + GC L+ L +S N G + + +L L
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206
Query: 59 LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI-P 117
+ +NNFS + L + L+ L++S NKLSGD I + L +L +S N G I P
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 118 VQLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIP-IAXXXXXXXXXX 176
+ L +L ++ L N G IP
Sbjct: 266 LPLKSL--------------------------QYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 177 XXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPI 235
N +G +P S L L L N G +P + L ++R L ++DLS N +G +
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359
Query: 236 PSCLGNVSSWREVID 250
P L N+S+ +D
Sbjct: 360 PESLTNLSASLLTLD 374
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 32/243 (13%)
Query: 3 KELITLDLSRNNFSGELSRPIFSG-CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
L +LDLSRN+ SG ++ G C L+ L++S+N
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--------------------- 138
Query: 62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWI--GNFSGLWVLLMSENYLQGSIPV 118
+F GK++ GL ++ LEVL++S N +SG ++ W+ L L +S N + G + V
Sbjct: 139 -DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
V LEF+D+ H+ + N ++G A
Sbjct: 197 S--RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC-QLRKLGIMDLSHNRLNGPIPS 237
N+ G IP L +L +L L N G IP+ L L +DLS N G +P
Sbjct: 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 238 CLG 240
G
Sbjct: 313 FFG 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 45/176 (25%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFS----------------------------------- 25
+ + LI LDL+ N F+G + +F
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 26 --GCPSLETLDLSNNN--------FYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSS 75
G S + LS N + G P + N + L + N SG + + S
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI 131
L +LN+ +N +SG IP +G+ GL +L +S N L G IP + L L ID+
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
M L L+L N+ SG + + L LDLS+N G++ LT L + L
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 61 NNNFSGKMTD 70
NNN SG + +
Sbjct: 713 NNNLSGPIPE 722
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMN--LTHLRSLL 58
+M+ L LDLS N FSGEL + + SL TLDLS+NNF G + PN L+ L
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 59 LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV 118
L NN F+GK+ L + + L L++S N LSG IP +G+ S L L + N L+G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
+L + LE + L N + G IP
Sbjct: 458 ELMYVKTLE-----------------------TLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSC 238
N+L G IP I L NL L L N G IP +L R L +DL+ N NG IP+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 239 L 239
+
Sbjct: 555 M 555
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 120/267 (44%), Gaps = 51/267 (19%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
+K L L L+ N F+GE+ + C +L LDLS N+FYG + P + + + L SL L +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 62 NNFSGKMT-DGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSG-LWVLLMSEN--------- 110
NNFSG++ D LL L+VL++S N+ SG++P + N S L L +S N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 111 ------------YLQ-----GSIPVQLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIY 153
YLQ G IP L N C E + ++
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELV---------------------SLH 421
Query: 154 LHNNAINGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPN 213
L N ++G IP + N L G IP ++ + L L+L N L G IP+
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 481
Query: 214 QLCQLRKLGIMDLSHNRLNGPIPSCLG 240
L L + LS+NRL G IP +G
Sbjct: 482 GLSNCTNLNWISLSNNRLTGEIPKWIG 508
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 117/262 (44%), Gaps = 24/262 (9%)
Query: 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63
EL++L LS N SG + + S L L L N G++ M + L +L+LD N+
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 64 FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNL 123
+G++ GL + T L +++SNN+L+G+IP WIG L +L +S N G+IP +LG+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 124 VCLEFIDI----------XXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXX 173
L ++D+ ++Y+ N+ + A
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 174 XXXXXXXNKLFGRIPHQINEL-------------SNLHFLLLRGNYLQGRIPNQLCQLRK 220
N+L R P I ++ FL + N L G IP ++ +
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 654
Query: 221 LGIMDLSHNRLNGPIPSCLGNV 242
L I++L HN ++G IP +G++
Sbjct: 655 LFILNLGHNDISGSIPDEVGDL 676
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 107/264 (40%), Gaps = 36/264 (13%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
+K L TL L N+ +GE+ + S C +L + LSNN G++ L +L L L N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL- 120
N+FSG + L L L+++ N +G IP + SG ++ N++ G V +
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 576
Query: 121 -----------GNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHN------------- 156
GNL LEF I H
Sbjct: 577 NDGMKKECHGAGNL--LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 157 ----NAINGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIP 212
N ++G IP N + G IP ++ +L L+ L L N L GRIP
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 213 NQLCQLRKLGIMDLSHNRLNGPIP 236
+ L L +DLS+N L+GPIP
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIP 718
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 113/253 (44%), Gaps = 31/253 (12%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
+ L LD+S N SG+ SR I S C L+ L++S+N F G + P + L L+ L L
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLA 274
Query: 61 NNNFSGKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
N F+G++ D L + L L++S N G +P + G+ S L L +S N G +P+
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 120 -LGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
L + L+ +D+ N +G +P +
Sbjct: 335 TLLKMRGLKVLDLSF-----------------------NEFSGELPESLTNLSASLLTLD 371
Query: 179 -XXNKLFGRIPHQI--NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235
N G I + N + L L L+ N G+IP L +L + LS N L+G I
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 236 PSCLGNVSSWREV 248
PS LG++S R++
Sbjct: 432 PSSLGSLSKLRDL 444
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 106/255 (41%), Gaps = 34/255 (13%)
Query: 1 EMKELITLDLSRNNFSGE--LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLL 58
++ L LDLS N+ SG + + GC L+ L +S N G + + +L L
Sbjct: 146 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 203
Query: 59 LDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSI-P 117
+ +NNFS + L + L+ L++S NKLSGD I + L +L +S N G I P
Sbjct: 204 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 118 VQLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIP-IAXXXXXXXXXX 176
+ L +L ++ L N G IP
Sbjct: 263 LPLKSL--------------------------QYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 177 XXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPI 235
N +G +P S L L L N G +P + L ++R L ++DLS N +G +
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 356
Query: 236 PSCLGNVSSWREVID 250
P L N+S+ +D
Sbjct: 357 PESLTNLSASLLTLD 371
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 32/243 (13%)
Query: 3 KELITLDLSRNNFSGELSRPIFSG-CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
L +LDLSRN+ SG ++ G C L+ L++S+N
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--------------------- 135
Query: 62 NNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWI--GNFSGLWVLLMSENYLQGSIPV 118
+F GK++ GL ++ LEVL++S N +SG ++ W+ L L +S N + G + V
Sbjct: 136 -DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 193
Query: 119 QLGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXX 178
V LEF+D+ H+ + N ++G A
Sbjct: 194 S--RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 179 XXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC-QLRKLGIMDLSHNRLNGPIPS 237
N+ G IP L +L +L L N G IP+ L L +DLS N G +P
Sbjct: 252 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 238 CLG 240
G
Sbjct: 310 FFG 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 45/176 (25%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFS----------------------------------- 25
+ + LI LDL+ N F+G + +F
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 26 --GCPSLETLDLSNNN--------FYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSS 75
G S + LS N + G P + N + L + N SG + + S
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI 131
L +LN+ +N +SG IP +G+ GL +L +S N L G IP + L L ID+
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
M L L+L N+ SG + + L LDLS+N G++ LT L + L
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 61 NNNFSGKMTD 70
NNN SG + +
Sbjct: 710 NNNLSGPIPE 719
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 30/241 (12%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
++ +L L ++ N SG + S +L TLD S N G L P+ +L +L + D
Sbjct: 99 KLTQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 61 NNNFSGKMTDGLLS-STLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119
N SG + D S S L + +S N+L+G IP N + L + +S N L+G V
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL 216
Query: 120 LGNLVCLEFIDIXXXXXXXXXXXXXXXXXXXHIYLHNNAINGLIPIAXXXXXXXXXXXXX 179
G+ + I + + L N +NGL
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLG---------KVGLSKN-LNGL--------------DLR 252
Query: 180 XNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR--LNGPIPS 237
N+++G +P + +L LH L + N L G IP Q L++ + ++N+ P+P+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPA 311
Query: 238 C 238
C
Sbjct: 312 C 312
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 78/200 (39%), Gaps = 2/200 (1%)
Query: 38 NNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIG 97
NN G + P LT L L + + N SG + D L L L+ S N LSG +P I
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 98 NFSGLWVLLMSENYLQGSIPVQLGNLVCL-EFIDIXXXXXXXXXXXXXXXXXXXHIYLHN 156
+ L + N + G+IP G+ L + I + L
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 157 NAINGLIPIAXXXXXXXXXXXXXXNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC 216
N + G + N L + ++ NL+ L LR N + G +P L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 217 QLRKLGIMDLSHNRLNGPIP 236
QL+ L +++S N L G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240
N L G IP I +L+ LH+L + + G IP+ L Q++ L +D S+N L+G +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 241 NVSSWREVIDDYSLLSG 257
++ + + D + +SG
Sbjct: 147 SLPNLVGITFDGNRISG 163
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 13 NNFSGELSRPIFSGCPSLET----LDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS--G 66
NF+ +R + CPS + LD SNN +F N +LT L +L+L N
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 67 KMTDGLLSSTLLEVLNVSNNKLSGD 91
K+ + L+ L++S N +S D
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYD 389
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
L L L RN+ S L R IF P L TL +SNNN + T L++L L +N
Sbjct: 125 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 65 S 65
+
Sbjct: 184 T 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64
L L L RN+ S L R IF P L TL +SNNN + T L++L L +N
Sbjct: 119 LTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 65 S 65
+
Sbjct: 178 T 178
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
+ L+ L+LS+N F G + +F LE LDLS N+ +++ L +L+ L LD
Sbjct: 322 LTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 62 NNFSGKMTDGLL 73
N + DG+
Sbjct: 381 NQLKS-VPDGIF 391
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN+L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 2 MKELITLDLS----RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRS 56
++ LI LD+S R F+G IF+G SLE L ++ N+F P+ + L +L
Sbjct: 420 LRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 57 LLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWI 96
L L S + L+VLN+++N+L +P I
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGI 513
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 191 INELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
N LS+L L + GN Q +P+ +LR L +DLS +L P+ ++SS +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN+L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN+L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN+L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 191 INELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
N LS+L L + GN Q +P+ +LR L +DLS +L P+ ++SS +
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 2 MKELITLDLS----RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRS 56
++ LI LD+S R F+G IF+G SLE L ++ N+F P+ + L +L
Sbjct: 444 LRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 57 LLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
L L S + L+VLN+S+N
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLL 59
E++ L LDLS+ +LS F+ SL+ L++S+NNF+ FP Y L L+ L
Sbjct: 492 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDY 549
Query: 60 D-NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH-----WIGNFSGLWV 104
N+ + K + + L LN++ N + H WI + L V
Sbjct: 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 600
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 191 INELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
N LS+L L + GN Q +P+ +LR L +DLS +L P+ ++SS +
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLL 59
E++ L LDLS+ +LS F+ SL+ L++S+NNF+ FP Y L L+ L
Sbjct: 468 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDY 525
Query: 60 D-NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH-----WIGNFSGLWV 104
N+ + K + + L LN++ N + H WI + L V
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 2 MKELITLDLS----RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRS 56
++ LI LD+S R F+G IF+G SLE L ++ N+F P+ + L +L
Sbjct: 420 LRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 57 LLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
L L S + L+VLN+S+N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 191 INELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWR 246
N LS+L L + GN Q +P+ +LR L +DLS +L P+ ++SS +
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLL 59
E++ L LDLS+ +LS F+ SL+ L++S+NNF+ FP Y L L+ L
Sbjct: 173 ELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDY 230
Query: 60 D-NNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPH-----WIGNFSGLWV 104
N+ + K + + L LN++ N + H WI + L V
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 2 MKELITLDLS----RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPN-YMNLTHLRS 56
++ LI LD+S R F+G IF+G SLE L ++ N+F P+ + L +L
Sbjct: 125 LRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 57 LLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86
L L S + L+VLN+S+N
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 200 LLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241
L L GN L +P ++ L L ++DLSHNRL +P+ LG+
Sbjct: 252 LYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 82 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 139 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 7 TLDLSRNNFSGELSRPIFSGC-PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFS 65
TLDLS N S P+ P+L LD+S N L L+ L L N
Sbjct: 81 TLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 66 GKMTDGLLSST-LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112
+ GLL+ T LE L+++NN L+ + L LL+ EN L
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLD 60
E + T DLS++ L + +FS LE L L+ N + LTHL+ L LD
Sbjct: 273 EASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALD 331
Query: 61 NNNFSGKMTDGLL 73
N + DG+
Sbjct: 332 TNQLKS-VPDGIF 343
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 18 ELSRPIFSGCPSLETLDLSNNNFY--GQLFPNYMNLTHL--RSLLLDNNNFSGKMTDGLL 73
EL + +F GC LE++ + NN G LF N L + S+++ F G
Sbjct: 243 ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYG------- 295
Query: 74 SSTLLEVLNVSNNKLSGD 91
S+L EV + + K G+
Sbjct: 296 CSSLTEVKLLDSVKFIGE 313
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY----GQLFPNYMNLTHLRSL 57
+K L LDLS+N P F SL+++D S+N + +L P + L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP--LQGKTLSFF 179
Query: 58 LLDNNNFSGKMTDGL------LSSTLLEVLNVSNNKLSGDIPHWIGNFS 100
L N+ +++ + +LE+L+VS N + DI GNFS
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI---TGNFS 225
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 50 NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK 87
N T L+ L++D N S +T GLL EV VS+N+
Sbjct: 4 NFTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNE 41
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
++ L L LS+N ++ F+G PSL TL+L +N + L+ LR L L N
Sbjct: 58 LRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 62 N 62
N
Sbjct: 117 N 117
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN 61
++ L L LS+N ++ F+G PSL TL+L +N + L+ LR L L N
Sbjct: 58 LRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRN 116
Query: 62 N 62
N
Sbjct: 117 N 117
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 28 PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LEVLNVSNN 86
P LDL NN ++ NL +L +L+L NN S K++ G + + LE L +S N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110
Query: 87 KLS 89
+L
Sbjct: 111 QLK 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 28 PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LEVLNVSNN 86
P LDL NN ++ NL +L +L+L NN S K++ G + + LE L +S N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110
Query: 87 KLS 89
+L
Sbjct: 111 QLK 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,797,554
Number of Sequences: 62578
Number of extensions: 247451
Number of successful extensions: 877
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 229
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)