Query 035481
Match_columns 258
No_of_seqs 152 out of 2555
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 03:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.5E-31 5.4E-36 238.1 15.9 252 2-255 92-344 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.2E-31 1.6E-35 235.2 15.0 251 2-255 117-368 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.8E-30 6.1E-35 205.8 4.9 254 1-256 100-354 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.8E-30 3.9E-35 206.8 2.3 202 4-206 174-376 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.1E-26 8.8E-31 184.2 -4.0 248 2-255 102-351 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-25 2.6E-30 181.5 -4.5 246 3-254 126-373 (1255)
7 KOG4237 Extracellular matrix p 99.9 2E-24 4.3E-29 165.0 -5.3 251 4-255 68-358 (498)
8 KOG0472 Leucine-rich repeat pr 99.8 2.5E-24 5.4E-29 165.0 -9.7 242 3-255 68-309 (565)
9 PLN03210 Resistant to P. syrin 99.8 1.8E-19 4E-24 163.1 16.3 100 148-252 779-878 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 1.4E-23 3.1E-28 160.9 -11.2 244 5-258 47-290 (565)
11 PLN03210 Resistant to P. syrin 99.8 1.9E-18 4E-23 156.6 16.3 126 124-254 778-904 (1153)
12 PRK15387 E3 ubiquitin-protein 99.8 5.6E-19 1.2E-23 150.7 11.6 220 4-257 223-459 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 1.3E-18 2.7E-23 149.1 12.7 226 5-256 180-428 (754)
14 cd00116 LRR_RI Leucine-rich re 99.8 2.5E-21 5.5E-26 153.3 -4.9 253 3-255 23-319 (319)
15 PRK15370 E3 ubiquitin-protein 99.8 4.6E-19 1E-23 151.7 8.6 206 3-232 199-428 (754)
16 KOG4237 Extracellular matrix p 99.8 1.9E-21 4.1E-26 148.8 -6.0 245 8-256 51-335 (498)
17 cd00116 LRR_RI Leucine-rich re 99.8 7.1E-21 1.5E-25 150.8 -3.5 251 7-257 2-292 (319)
18 KOG0618 Serine/threonine phosp 99.8 1.4E-20 3.1E-25 157.7 -4.9 241 3-254 219-487 (1081)
19 KOG0618 Serine/threonine phosp 99.7 2.9E-20 6.3E-25 155.8 -6.0 244 1-257 197-466 (1081)
20 PRK15387 E3 ubiquitin-protein 99.7 1.4E-16 3.1E-21 136.1 14.0 218 4-257 202-436 (788)
21 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.3E-24 123.8 -3.5 163 50-241 31-194 (264)
22 KOG0617 Ras suppressor protein 99.7 3.3E-19 7.2E-24 122.2 -3.4 158 95-256 28-186 (264)
23 KOG1909 Ran GTPase-activating 99.6 2.2E-16 4.7E-21 119.6 -1.4 231 25-255 27-310 (382)
24 KOG1909 Ran GTPase-activating 99.4 4.6E-14 1E-18 107.1 -1.4 230 2-231 29-310 (382)
25 KOG0532 Leucine-rich repeat (L 99.4 9.4E-15 2E-19 117.5 -5.8 173 77-257 76-248 (722)
26 KOG1259 Nischarin, modulator o 99.4 2.8E-13 6E-18 101.4 2.2 129 123-257 283-413 (490)
27 KOG3207 Beta-tubulin folding c 99.3 8E-14 1.7E-18 108.8 -1.0 206 50-256 119-339 (505)
28 PF14580 LRR_9: Leucine-rich r 99.3 1.4E-12 3.1E-17 92.5 3.6 125 98-225 17-146 (175)
29 COG4886 Leucine-rich repeat (L 99.2 8.8E-12 1.9E-16 101.7 4.6 173 76-255 116-289 (394)
30 COG4886 Leucine-rich repeat (L 99.2 1.6E-11 3.5E-16 100.1 5.5 174 28-208 116-290 (394)
31 PF13855 LRR_8: Leucine rich r 99.2 1.6E-11 3.4E-16 72.1 3.8 61 3-64 1-61 (61)
32 KOG0532 Leucine-rich repeat (L 99.2 6.2E-13 1.3E-17 107.2 -3.0 168 33-208 80-247 (722)
33 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.6E-16 87.1 4.2 106 124-232 19-126 (175)
34 KOG3207 Beta-tubulin folding c 99.2 1.3E-12 2.7E-17 102.2 -1.6 206 2-208 120-339 (505)
35 PF13855 LRR_8: Leucine rich r 99.2 1.9E-11 4E-16 71.8 2.6 59 196-254 2-60 (61)
36 KOG4658 Apoptotic ATPase [Sign 99.1 4.5E-11 9.8E-16 104.8 5.2 108 2-111 544-653 (889)
37 PLN03150 hypothetical protein; 99.1 9.6E-11 2.1E-15 100.3 5.4 106 149-254 420-526 (623)
38 KOG1259 Nischarin, modulator o 99.1 4.8E-11 1E-15 89.6 2.3 129 99-232 283-412 (490)
39 KOG4658 Apoptotic ATPase [Sign 99.0 1.7E-10 3.6E-15 101.3 2.9 128 4-135 524-653 (889)
40 PLN03150 hypothetical protein; 99.0 4.8E-10 1.1E-14 96.1 4.7 86 172-257 419-504 (623)
41 COG5238 RNA1 Ran GTPase-activa 98.9 2.1E-10 4.6E-15 84.9 0.2 230 27-256 29-316 (388)
42 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.4E-15 94.8 -2.0 126 52-183 72-198 (414)
43 KOG1859 Leucine-rich repeat pr 98.8 3.6E-11 7.9E-16 100.0 -6.3 179 69-255 102-291 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.8 4E-11 8.6E-16 89.8 -8.3 192 29-222 186-390 (419)
45 KOG0531 Protein phosphatase 1, 98.7 8.1E-10 1.8E-14 90.6 -1.6 218 26-255 93-317 (414)
46 KOG2120 SCF ubiquitin ligase, 98.7 2.6E-11 5.6E-16 90.8 -10.5 153 78-230 187-349 (419)
47 KOG1859 Leucine-rich repeat pr 98.6 1.4E-09 3.1E-14 90.8 -5.1 158 93-258 102-269 (1096)
48 COG5238 RNA1 Ran GTPase-activa 98.5 1.8E-08 3.9E-13 74.9 -0.7 230 2-232 29-316 (388)
49 KOG2982 Uncharacterized conser 98.5 1E-08 2.2E-13 77.2 -2.2 181 76-256 71-262 (418)
50 KOG1644 U2-associated snRNP A' 98.4 2.8E-07 6.1E-12 65.6 4.4 102 148-251 43-148 (233)
51 KOG4579 Leucine-rich repeat (L 98.4 8.9E-09 1.9E-13 68.6 -3.0 89 146-237 52-140 (177)
52 KOG2982 Uncharacterized conser 98.4 6E-08 1.3E-12 73.1 0.1 183 27-209 70-263 (418)
53 PF13306 LRR_5: Leucine rich r 98.3 3E-06 6.5E-11 57.8 7.1 110 19-133 3-112 (129)
54 PF12799 LRR_4: Leucine Rich r 98.3 1.4E-07 3E-12 50.8 0.1 37 195-232 1-37 (44)
55 PF13306 LRR_5: Leucine rich r 98.3 3.6E-06 7.8E-11 57.4 7.0 100 3-108 12-111 (129)
56 KOG1644 U2-associated snRNP A' 98.2 3.6E-06 7.8E-11 60.1 6.1 84 97-180 61-149 (233)
57 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 47.4 2.0 37 171-208 1-37 (44)
58 KOG4341 F-box protein containi 98.2 5.7E-09 1.2E-13 81.8 -9.6 109 145-253 318-436 (483)
59 PRK15386 type III secretion pr 98.1 1.4E-05 3.1E-10 64.2 8.6 56 49-110 49-104 (426)
60 KOG4579 Leucine-rich repeat (L 98.0 5.5E-07 1.2E-11 60.3 -1.4 107 148-257 28-137 (177)
61 KOG3665 ZYG-1-like serine/thre 98.0 7.4E-07 1.6E-11 77.0 -1.8 148 100-249 122-281 (699)
62 PRK15386 type III secretion pr 97.9 0.00019 4.1E-09 57.9 10.5 14 3-16 52-65 (426)
63 KOG4341 F-box protein containi 97.9 2.1E-07 4.6E-12 73.2 -5.8 230 1-230 162-437 (483)
64 KOG3665 ZYG-1-like serine/thre 97.7 1.6E-05 3.4E-10 68.9 1.7 133 4-138 123-264 (699)
65 KOG1947 Leucine rich repeat pr 97.6 2.6E-06 5.7E-11 71.5 -4.7 35 197-231 403-439 (482)
66 KOG2739 Leucine-rich acidic nu 97.5 4.4E-05 9.6E-10 56.8 1.1 83 148-232 44-129 (260)
67 KOG2123 Uncharacterized conser 97.4 3.7E-06 8E-11 63.2 -5.2 100 2-106 18-123 (388)
68 KOG2123 Uncharacterized conser 97.3 6.1E-06 1.3E-10 62.0 -4.9 100 99-201 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.6E-09 53.9 1.9 84 171-256 43-129 (260)
70 KOG3864 Uncharacterized conser 97.2 5.8E-05 1.3E-09 54.1 -1.1 80 148-227 102-184 (221)
71 KOG1947 Leucine rich repeat pr 96.8 3.2E-05 6.9E-10 65.0 -5.6 31 191-221 358-389 (482)
72 PF00560 LRR_1: Leucine Rich R 96.8 0.00074 1.6E-08 30.2 1.2 21 220-241 1-21 (22)
73 KOG3864 Uncharacterized conser 96.2 0.00057 1.2E-08 49.2 -1.7 81 172-252 102-185 (221)
74 PF00560 LRR_1: Leucine Rich R 96.1 0.0027 5.8E-08 28.3 0.8 18 4-22 1-18 (22)
75 smart00369 LRR_TYP Leucine-ric 95.7 0.0087 1.9E-07 27.9 1.6 23 2-25 1-23 (26)
76 smart00370 LRR Leucine-rich re 95.7 0.0087 1.9E-07 27.9 1.6 23 2-25 1-23 (26)
77 PF13504 LRR_7: Leucine rich r 95.7 0.006 1.3E-07 25.3 0.9 14 3-16 1-14 (17)
78 KOG4308 LRR-containing protein 95.3 2.7E-05 5.8E-10 64.7 -13.1 162 96-257 111-304 (478)
79 KOG0473 Leucine-rich repeat pr 92.9 0.0024 5.1E-08 47.3 -5.5 85 145-232 40-124 (326)
80 PF13516 LRR_6: Leucine Rich r 92.4 0.016 3.5E-07 26.3 -1.2 12 220-231 3-14 (24)
81 KOG4308 LRR-containing protein 88.5 0.003 6.4E-08 52.8 -9.7 156 102-257 89-276 (478)
82 smart00364 LRR_BAC Leucine-ric 82.2 0.97 2.1E-05 21.0 1.2 18 3-21 2-19 (26)
83 smart00365 LRR_SD22 Leucine-ri 81.2 1.3 2.8E-05 20.5 1.5 12 29-40 3-14 (26)
84 KOG0473 Leucine-rich repeat pr 81.1 0.042 9.2E-07 40.9 -5.4 91 19-112 33-123 (326)
85 KOG3763 mRNA export factor TAP 79.8 0.8 1.7E-05 38.7 0.8 63 169-232 216-283 (585)
86 smart00368 LRR_RI Leucine rich 78.7 0.49 1.1E-05 22.3 -0.4 12 196-207 3-14 (28)
87 KOG3763 mRNA export factor TAP 78.2 1.5 3.3E-05 37.1 2.0 65 1-66 216-284 (585)
88 smart00367 LRR_CC Leucine-rich 78.0 1.2 2.7E-05 20.4 0.9 13 218-230 1-13 (26)
89 KOG4242 Predicted myosin-I-bin 56.8 25 0.00054 29.7 4.7 14 219-232 440-453 (553)
90 TIGR00864 PCC polycystin catio 48.1 13 0.00028 38.4 2.1 32 9-41 1-32 (2740)
91 PF07723 LRR_2: Leucine Rich R 32.7 20 0.00044 16.4 0.5 11 5-15 2-12 (26)
92 TIGR00864 PCC polycystin catio 25.9 53 0.0011 34.5 2.3 31 153-183 1-31 (2740)
93 TIGR02167 Liste_lipo_26 bacter 22.1 44 0.00095 15.4 0.6 12 25-36 3-14 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.5e-31 Score=238.10 Aligned_cols=252 Identities=35% Similarity=0.487 Sum_probs=136.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|++.+.+|...|..+++|++|++++|.+.+..+. ..+++|++|++++|.+....+..+..+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 677888888888877677777776777777777777766543322 234556666666665554445555556666666
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++++|.+....|..+.++++|++|++.+|.+.+..|..+..+++|+.|+++.|.+.. .+..+..+++|++|++++|.++
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 666665554555555555556666665555555555555555555555555555442 3333444555555555555544
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
+..+..+..+++|+.|++++|.+....|..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+.+|..+.
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence 44444444445555555555544444444444444444444444444444444444444444444444444444444444
Q ss_pred cccchhhhhhccccc
Q 035481 241 NVSSWREVIDDYSLL 255 (258)
Q Consensus 241 ~l~~L~~l~l~~~~~ 255 (258)
.+++|+.|++++|.+
T Consensus 330 ~l~~L~~L~L~~n~l 344 (968)
T PLN00113 330 SLPRLQVLQLWSNKF 344 (968)
T ss_pred cCCCCCEEECcCCCC
Confidence 444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=7.2e-31 Score=235.15 Aligned_cols=251 Identities=35% Similarity=0.561 Sum_probs=140.2
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|++++.+|.. .+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 456777777777666555532 35566666666666655555556666666666666666554555555566666666
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++++|.+....|..+..+++|+.+++.+|.+.+..|..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 666666555555555566666666666666555555555556666666666555542 3334445555555555555555
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
+..+..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 44444455555555555555555444444455555555555555555444444444555555555555555444444444
Q ss_pred cccchhhhhhccccc
Q 035481 241 NVSSWREVIDDYSLL 255 (258)
Q Consensus 241 ~l~~L~~l~l~~~~~ 255 (258)
.+++|+.|++++|.+
T Consensus 354 ~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 354 KHNNLTVLDLSTNNL 368 (968)
T ss_pred CCCCCcEEECCCCee
Confidence 455555555554444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-30 Score=205.76 Aligned_cols=254 Identities=22% Similarity=0.212 Sum_probs=166.6
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++|+|+.+++.+|.++ .+|... .-..+++.|+|.+|.|+++....++.++.|+.||++.|.++......+..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 3566666666666665 555422 12234666677777666666666666777777777777776555555555567777
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccc
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAI 159 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~ 159 (258)
|++++|.++..-...|.++.+|..+.+..|.++......|.++++|+.|++..|.+... ...|..+++++.+.+..|.+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 77777777766566666777777777777777755555677788888888888877654 45666777777777777777
Q ss_pred cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481 160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239 (258)
Q Consensus 160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 239 (258)
.....++|..+.++++|+|+.|++.....+++.+++.|+.|++++|.+...-++.-.-+++|++|+|++|+++..-+..|
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 76666777777777777777777665555666666666666666666655555555555666666666666664333456
Q ss_pred ccccchhhhhhcccccC
Q 035481 240 GNVSSWREVIDDYSLLS 256 (258)
Q Consensus 240 ~~l~~L~~l~l~~~~~~ 256 (258)
..+.+|++|++++|.++
T Consensus 338 ~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSID 354 (873)
T ss_pred HHHHHhhhhcccccchH
Confidence 66666666666666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-30 Score=206.85 Aligned_cols=202 Identities=26% Similarity=0.184 Sum_probs=102.0
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
++++|+|++|+++ .+..+.|.++.+|..|.|+.|.++...+..|.++++|+.|++..|.+.-...-.|..+++|+.+.+
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 3445555555554 444444555555555555555554444444555555555555555444222333444444444444
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
..|++.......|..+.++++|++..|.++..-..++.+++.|+.|++++|.+..+ +..+..+++|+.|++++|.++..
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 44444444444455555566666666665544445555666666666666666543 34455566666666666666555
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCe
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY 206 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (258)
.+..+..+..|++|.|++|.+......+|..+.+|++|+++.|.
T Consensus 333 ~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 333 DEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred ChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 44444444444455554444432222333333344444444433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.1e-26 Score=184.17 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=149.4
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+..|++||+|+|++. ++|.+. ...+++-.|++++|+|..+.-+-|.++.-|-.|++++|.+. ..|.....+..|++|
T Consensus 102 l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 345666667776666 566553 55666666677766665554455556666666666666665 344555666666666
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccc-cCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYL-QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
.+++|.+.......+..+++|+.|.+++++- ...+|..+..+.+|..+|++.|.+...|+.+..+++|+.|++++|.++
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 6666655422222333444555555554432 124455566666777777777777777777777777777777777776
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec-ccCCccccCCCcccEEEccCceeecCCCccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ-GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 239 (258)
.. ......+.++++|+++.|.++ ..|.++..+++|+.|.+.+|++. +-+|..++.+..|+.+..++|.+. ..|+.+
T Consensus 259 eL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 259 EL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred ee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhh
Confidence 32 333444566777777777765 66666777777777766666554 233555555555555555555554 556666
Q ss_pred ccccchhhhhhccccc
Q 035481 240 GNVSSWREVIDDYSLL 255 (258)
Q Consensus 240 ~~l~~L~~l~l~~~~~ 255 (258)
..|..|+.|.+++|.+
T Consensus 336 cRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRL 351 (1255)
T ss_pred hhhHHHHHhcccccce
Confidence 6666666666665554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-25 Score=181.53 Aligned_cols=246 Identities=29% Similarity=0.383 Sum_probs=217.7
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
.++-.|++|+|++. .+|...|-++..|-+||+++|.+. ..|+-+.++..|++|.+++|.+.......+..+.+|..|.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 35678999999998 999999999999999999999986 5677888899999999999988755556666778888888
Q ss_pred ccCcccc-CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481 83 VSNNKLS-GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 83 l~~~~~~-~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
+++..-+ ..+|..+..+.+|..++++.|.+. ..|+.+..+.+|+.|++++|.+++.........++++|+++.|+++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-
Confidence 8887654 578888999999999999999998 7899999999999999999999998888888899999999999998
Q ss_pred cCccchhcCCCceEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
..|.++..++.|+.|.+.+|.++ +-+|..+..+..|+++...+|.+. ..|..+++|..|+.|.|+.|++. .+|+.+.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 56788889999999999999885 468888899999999999999886 88999999999999999999987 6899999
Q ss_pred cccchhhhhhcccc
Q 035481 241 NVSSWREVIDDYSL 254 (258)
Q Consensus 241 ~l~~L~~l~l~~~~ 254 (258)
-++-|+.|++..|+
T Consensus 360 lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENP 373 (1255)
T ss_pred hcCCcceeeccCCc
Confidence 99999999998876
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=2e-24 Score=164.99 Aligned_cols=251 Identities=18% Similarity=0.171 Sum_probs=194.3
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccc-ccccccCCcccCCCCCccEEE
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDN-NNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~ 82 (258)
....+.|..|+++ .+|.++|+.+++|++|||++|.|+.+.+.+|.+++.+..|.+++ |+|+......|..+..++.|.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4567889999999 99999999999999999999999999999999999999988887 888877777888899999999
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccc------ee-------ecCCCCCc---
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSL------SG-------SMVSLSNL--- 146 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------~~-------~~~~~~~~--- 146 (258)
+.-+.+.-...+.+..++++..|.+..|.+.......+..+..++.+.+..|.. .+ .+..++..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 988888866667888899999999999888733333666666777766665541 00 00000000
Q ss_pred -------------------CCCcEE----EeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEee
Q 035481 147 -------------------SSVEHI----YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203 (258)
Q Consensus 147 -------------------~~L~~l----~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 203 (258)
..++.+ .-..+....-+...|..+++|+.|++++|.++.+-+.+|.+...+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 001111 111111121234567888999999999999998888899999999999999
Q ss_pred CCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccccc
Q 035481 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 204 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 255 (258)
.|++...-...|.++++|+.|+|.+|+|+...|-.|..+.+|.+|.+-.|++
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 9998876677888999999999999999977788899999999999988876
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.5e-24 Score=165.01 Aligned_cols=242 Identities=28% Similarity=0.361 Sum_probs=170.1
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+-+.+++++++++. +.|+.+ .....+..++.++|++. ..++.+...+.+..+++++|.+. ..++.++.+..+..++
T Consensus 68 ~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred cceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 33445555555554 444433 23444455555555554 33444555555666666665554 3344455555666666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
.++|.+. ..|+.+.++.++..+.+.++++....+. .-.++.|+.+|...|.+...|+.++...+|..+++..|.+..
T Consensus 144 ~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~- 220 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF- 220 (565)
T ss_pred ccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-
Confidence 6666665 5566666777777777777777644333 333778888888888888888888888888888888888873
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV 242 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l 242 (258)
.| .|.+|..|.+++++.|.+.-...+...+++++.+||+.+|++. +.|+.++-+.+|++||+++|.++ .+|..++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 33 6788888999999988885333344458899999999999998 77888898999999999999998 689899999
Q ss_pred cchhhhhhccccc
Q 035481 243 SSWREVIDDYSLL 255 (258)
Q Consensus 243 ~~L~~l~l~~~~~ 255 (258)
.|+.|-+.||++
T Consensus 298 -hL~~L~leGNPl 309 (565)
T KOG0472|consen 298 -HLKFLALEGNPL 309 (565)
T ss_pred -eeeehhhcCCch
Confidence 999999999987
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.8e-19 Score=163.08 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=45.5
Q ss_pred CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEcc
Q 035481 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLS 227 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~ 227 (258)
+|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 45555555554444445555566666666666654333333332 3444455555444222222211 1234444444
Q ss_pred CceeecCCCcccccccchhhhhhcc
Q 035481 228 HNRLNGPIPSCLGNVSSWREVIDDY 252 (258)
Q Consensus 228 ~~~~~~~~~~~~~~l~~L~~l~l~~ 252 (258)
+|.++ .+|.++..+++|+.|++++
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCC
Confidence 44443 3444444444444444444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.4e-23 Score=160.91 Aligned_cols=244 Identities=25% Similarity=0.306 Sum_probs=203.6
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
++.+.++.|.+. .+..+. .+++.+.++++.+|+.. ..++++..+.+++.++.++|++. ..|.++..+.++..++++
T Consensus 47 l~~lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDL-KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhh-hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 556778888876 555443 67888889999999886 56677788888888999999887 567777788889999999
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCc
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP 164 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 164 (258)
.|.+. ..++.++.+..+..++..+|+++ ..|..+..+.++..+++.+|.+...++.....+.|+++++..|.+. ..|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 98887 67778888888999998888888 6677888888898999999999887776666889999999999887 456
Q ss_pred cchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccc
Q 035481 165 IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244 (258)
Q Consensus 165 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 244 (258)
..+..+.+|+.|++..|++. ..| .|.+|..|+++++..|.+.........+++++..||+++|+++ ..|+.+..+++
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 77888999999999999985 666 7899999999999999987433344458999999999999998 68999999999
Q ss_pred hhhhhhcccccCCC
Q 035481 245 WREVIDDYSLLSGF 258 (258)
Q Consensus 245 L~~l~l~~~~~~~~ 258 (258)
|.+|++++|.|++.
T Consensus 277 L~rLDlSNN~is~L 290 (565)
T KOG0472|consen 277 LERLDLSNNDISSL 290 (565)
T ss_pred hhhhcccCCccccC
Confidence 99999999999873
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1.9e-18 Score=156.61 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=92.5
Q ss_pred CCccEEEcccccc-eeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481 124 VCLEFIDISENSL-SGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202 (258)
Q Consensus 124 ~~L~~L~l~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 202 (258)
++|+.|++++|.. ...+..+..+++|+.|++.+|.....+|..+ .+++|+.|++++|......|. ..++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeEC
Confidence 4566677766643 3456667788899999999885433444444 678899999999865444443 2467899999
Q ss_pred eCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccc
Q 035481 203 RGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL 254 (258)
Q Consensus 203 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 254 (258)
++|.+. .+|..+..+++|+.|++++|.--..+|..+..+++|+.+++.+|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999887 677888889999999999876444677777788888888888774
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=5.6e-19 Score=150.66 Aligned_cols=220 Identities=27% Similarity=0.289 Sum_probs=138.4
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCccc-----------
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGL----------- 72 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------- 72 (258)
+|+.|++.+|+++ .+|. ..++|++|++++|+++.+. . ..++|+.|++.+|.+.. .+..+
T Consensus 223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~~-Lp~lp~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc-C---cccccceeeccCCchhh-hhhchhhcCEEECcCC
Confidence 5777888888887 5664 2577888888888776432 1 12455666666655442 11111
Q ss_pred ------CCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCc
Q 035481 73 ------LSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNL 146 (258)
Q Consensus 73 ------~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 146 (258)
..+++|+.|++++|.+.. +|.. ...|+.|.+.+|.+. .+|. ...+|+.|++++|.+..++.. .
T Consensus 293 ~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~LP~l---p 361 (788)
T PRK15387 293 QLTSLPVLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLASLPTL---P 361 (788)
T ss_pred ccccccccccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---cccccceEecCCCccCCCCCC---C
Confidence 012344555555544441 2221 123444444444444 2221 123677777777777665532 2
Q ss_pred CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226 (258)
Q Consensus 147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 226 (258)
.+++.|++.+|.+..+ +. .+.+|+.|++++|.++ .+|.. .++|+.|++++|.+.+ +|.. +.+|+.|++
T Consensus 362 ~~L~~L~Ls~N~L~~L-P~---l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~L 429 (788)
T PRK15387 362 SELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSV 429 (788)
T ss_pred cccceehhhccccccC-cc---cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhh
Confidence 4567777777777643 22 2357888999999886 34432 3678999999998874 5543 346888999
Q ss_pred cCceeecCCCcccccccchhhhhhcccccCC
Q 035481 227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.++ .+|..+..+++|+.|++++|+++|
T Consensus 430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred ccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 999998 789999999999999999999986
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.3e-18 Score=149.07 Aligned_cols=226 Identities=23% Similarity=0.351 Sum_probs=103.3
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
.+.|++++.+++ .+|..+ .++++.|++++|.++.+ +..+. ++|++|++++|.++. .+..+ ..+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 345555555555 455433 23455555555555432 22221 345555555555442 22221 1345555555
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC-------------------C
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS-------------------N 145 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------~ 145 (258)
+|.+. .+|..+. .+|+.|++.+|.+. .+|..+. ++|+.|++++|.+..++..+. -
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l 323 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL 323 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc
Confidence 55544 3333221 34555555555544 2333221 345555555554443332211 1
Q ss_pred cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481 146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225 (258)
Q Consensus 146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 225 (258)
.++|+.|++++|.++.. +..+ +++|+.|++++|.+. .+|..+ .++|+.|++++|.+. .+|..+. ..|+.|+
T Consensus 324 ~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld 394 (754)
T PRK15370 324 PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQ 394 (754)
T ss_pred cccceeccccCCccccC-Chhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence 13455555555555432 2222 145555666655554 233322 245566666666555 2333332 2455566
Q ss_pred ccCceeecCCCccc----ccccchhhhhhcccccC
Q 035481 226 LSHNRLNGPIPSCL----GNVSSWREVIDDYSLLS 256 (258)
Q Consensus 226 l~~~~~~~~~~~~~----~~l~~L~~l~l~~~~~~ 256 (258)
+++|.+. .+|..+ ..++.+..|++.+|+++
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6666655 344322 22355556666666653
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.5e-21 Score=153.35 Aligned_cols=253 Identities=21% Similarity=0.202 Sum_probs=129.8
Q ss_pred CcceEEecCcCcccccc---CcccccCCCCccEEECCCCcccc------ccCccccCCcccceeecccccccccCCcccC
Q 035481 3 KELITLDLSRNNFSGEL---SRPIFSGCPSLETLDLSNNNFYG------QLFPNYMNLTHLRSLLLDNNNFSGKMTDGLL 73 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 73 (258)
++|+.++++++.+++.. ....+...++++.++++++.+.. ..+..+..+++|+.|+++++.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 34666666666653210 11223445566666666665431 1122344456677777766665432233332
Q ss_pred CCC---CccEEEccCccccC----CCCCcCCCC-CccceEEecCccccCC----cCccccCCCCccEEEccccccee---
Q 035481 74 SST---LLEVLNVSNNKLSG----DIPHWIGNF-SGLWVLLMSENYLQGS----IPVQLGNLVCLEFIDISENSLSG--- 138 (258)
Q Consensus 74 ~l~---~L~~l~l~~~~~~~----~~~~~l~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~--- 138 (258)
.+. +|++++++++.+.. .....+..+ ++|+.+++.+|.+++. ....+..++.|+.|++++|.+.+
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 232 36677776665541 111223344 6667777766665522 12234445566777776666542
Q ss_pred --ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhhc-----cCCCccEEEeeCCee
Q 035481 139 --SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQIN-----ELSNLHFLLLRGNYL 207 (258)
Q Consensus 139 --~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l 207 (258)
....+...++|+++++++|.+++. ....+..+++|++|++++|.+.......+. ..+.|+.|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 112233445677777776665432 223344556677777777665432121111 135677777777666
Q ss_pred cc----cCCccccCCCcccEEEccCceeecC----CCcccccc-cchhhhhhccccc
Q 035481 208 QG----RIPNQLCQLRKLGIMDLSHNRLNGP----IPSCLGNV-SSWREVIDDYSLL 255 (258)
Q Consensus 208 ~~----~~~~~l~~~~~L~~l~l~~~~~~~~----~~~~~~~l-~~L~~l~l~~~~~ 255 (258)
++ .....+..+++|+++++++|.++.. +...+... +.|+++++.+|++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 42 1223344456677777777766532 23333334 5666666666653
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=4.6e-19 Score=151.74 Aligned_cols=206 Identities=23% Similarity=0.334 Sum_probs=132.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|+.|++++|+++ .+|...+ ++|+.|++++|.+..+ +..+. +.|+.|++++|.+. ..|..+ ..+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l~--~~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATLP--DTIQEMELSINRIT-ELPERL--PSALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhhh--ccccEEECcCCccC-cCChhH--hCCCCEEE
Confidence 35778888888887 6776553 4677777777776533 22222 35666666666655 223322 23456666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccC--------------------CcCccccCCCCccEEEcccccceeecCC
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--------------------SIPVQLGNLVCLEFIDISENSLSGSMVS 142 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 142 (258)
+++|.+. .+|..+. ++|+.|++.+|.++. .+|..+ .++|+.|++++|.+..++..
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccCCccccCChh
Confidence 6655555 3333321 345555555554442 122221 25788888888888776654
Q ss_pred CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc----CC
Q 035481 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC----QL 218 (258)
Q Consensus 143 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~~ 218 (258)
+. ++|+.|++++|.++.. +..+ .+.|+.|++++|.++ .+|..+. +.|+.|++++|++. .+|..+. .+
T Consensus 344 l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 43 7899999999998743 4433 368999999999987 4555443 36999999999987 4555443 45
Q ss_pred CcccEEEccCceee
Q 035481 219 RKLGIMDLSHNRLN 232 (258)
Q Consensus 219 ~~L~~l~l~~~~~~ 232 (258)
+.+..+++.+|.+.
T Consensus 415 ~~l~~L~L~~Npls 428 (754)
T PRK15370 415 PQPTRIIVEYNPFS 428 (754)
T ss_pred CCccEEEeeCCCcc
Confidence 78899999999886
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-21 Score=148.84 Aligned_cols=245 Identities=19% Similarity=0.188 Sum_probs=188.2
Q ss_pred EecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC-c
Q 035481 8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN-N 86 (258)
Q Consensus 8 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~-~ 86 (258)
.+-++-+++ ++|.+. .+....++|..|+|+.+.+.+|..+++|++|++++|.|+.+.+.+|..++++..+.+.+ |
T Consensus 51 VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 455666677 788776 56788999999999999999999999999999999999999999999999888887665 8
Q ss_pred cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccc-----
Q 035481 87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAIN----- 160 (258)
Q Consensus 87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~----- 160 (258)
+++......|..+..++-|.+.-+++.-...+.+..++++..|.+..|.+..+.. .+.....++++.+..|.+.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 8987777788999999999998888775556678889999999999998877655 5667777777777666521
Q ss_pred -------ccCccchhcCCCceEEEccC-------------------------CcccCCCC-hhhccCCCccEEEeeCCee
Q 035481 161 -------GLIPIALLRSSTLLTLDLRD-------------------------NKLFGRIP-HQINELSNLHFLLLRGNYL 207 (258)
Q Consensus 161 -------~~~~~~~~~~~~L~~L~l~~-------------------------~~~~~~~~-~~~~~~~~L~~L~l~~~~l 207 (258)
...+..+++..-..-..+.+ +....+.| ..|..+++|++|++++|++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 01111111111111111111 11111222 3467889999999999999
Q ss_pred cccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 208 QGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 208 ~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+++-+.+|+....+++|-|.+|++...-..+|.++..|+.|++.+|+||
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 9888899999999999999999998555567999999999999999996
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=7.1e-21 Score=150.80 Aligned_cols=251 Identities=23% Similarity=0.241 Sum_probs=180.3
Q ss_pred EEecCcCccccccCcccccCCCCccEEECCCCccccc----cCccccCCcccceeecccccccc------cCCcccCCCC
Q 035481 7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLDNNNFSG------KMTDGLLSST 76 (258)
Q Consensus 7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~ 76 (258)
.|+|+.+.+++.--...|..+++|+.++++++.++.. .+..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4678888776444445567788899999999988533 23344567789999999887652 1223456678
Q ss_pred CccEEEccCccccCCCCCcCCCC---CccceEEecCccccCC----cCccccCC-CCccEEEccccccee-----ecCCC
Q 035481 77 LLEVLNVSNNKLSGDIPHWIGNF---SGLWVLLMSENYLQGS----IPVQLGNL-VCLEFIDISENSLSG-----SMVSL 143 (258)
Q Consensus 77 ~L~~l~l~~~~~~~~~~~~l~~l---~~L~~l~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~-----~~~~~ 143 (258)
+|+.++++++.+....+..+..+ ++|+.+++.++.+.+. ....+..+ ++|+.+++++|.+.. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999988864444444444 4499999999887632 22344556 899999999998873 23345
Q ss_pred CCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCccc
Q 035481 144 SNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQL 215 (258)
Q Consensus 144 ~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 215 (258)
..++.|+++++++|.+++. ....+...++|+.|++++|.+... ....+..+++|++|++++|.+.+.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 5667899999999988742 233445567999999999987533 23455678999999999998875333222
Q ss_pred c-----CCCcccEEEccCceee----cCCCcccccccchhhhhhcccccCC
Q 035481 216 C-----QLRKLGIMDLSHNRLN----GPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 216 ~-----~~~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
. ..+.|++|++++|.++ ..+...+..+++|+.+++++|.++.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 2 2379999999999986 2334556777899999999999863
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-20 Score=157.66 Aligned_cols=241 Identities=25% Similarity=0.323 Sum_probs=142.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++++.|+.++|.++ ..... ....+|++++++++.+.... ..+..+.+|+.+...+|.+. ..+..+....+|+.+.
T Consensus 219 ~~l~~L~a~~n~l~-~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLT-TLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcce-eeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 45666666666655 22221 12456777777777665433 55566677777777777664 3444455556666666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccc-c-------------------------CCCCccEEEcccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQL-G-------------------------NLVCLEFIDISENSL 136 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~-~-------------------------~~~~L~~L~l~~~~~ 136 (258)
+..|++. -+|........|++|++..|.+. ..|..+ . ..+.|+.|.+.+|.+
T Consensus 294 ~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 6666665 45555556666666666666554 222211 0 112344444445555
Q ss_pred ee-ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccc
Q 035481 137 SG-SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQL 215 (258)
Q Consensus 137 ~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 215 (258)
.+ ..+.+....+|+.|++++|.+..++...+.++..|++|+|++|+++ .+|..+..++.|++|...+|++. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 43 2334446667777777777776666666666777777777777765 55566666677777777777665 445 55
Q ss_pred cCCCcccEEEccCceeec-CCCcccccccchhhhhhcccc
Q 035481 216 CQLRKLGIMDLSHNRLNG-PIPSCLGNVSSWREVIDDYSL 254 (258)
Q Consensus 216 ~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~ 254 (258)
..++.|+.+|++.|.++. .++..+.. ++|++|++++|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 667777777777777652 22333333 677777777775
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.73 E-value=2.9e-20 Score=155.84 Aligned_cols=244 Identities=26% Similarity=0.316 Sum_probs=179.0
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++++|+.+....+++. .+. -.-++++.|+.++|.+...... ..-.+|++++++++.++ ..+.++..+.+|+.
T Consensus 197 ~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceE
Confidence 3567777777777765 332 2357899999999988732221 23357999999999998 45588999999999
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC----------------
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS---------------- 144 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------- 144 (258)
+..+.|.+. ..|..+....+|+.+.+..|.+. .+|........|++|++..|.+...++.+.
T Consensus 269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 999999996 77888888999999999999998 556667778999999999998876544221
Q ss_pred ----------CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcc
Q 035481 145 ----------NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQ 214 (258)
Q Consensus 145 ----------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 214 (258)
..+.|+.|++.+|.+++..-..+.+.++|+.|+|++|.+.......+.+++.|+.|+++||+++ .+|+.
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 1234455666667666655566667777777777777776555556667777777777777776 45566
Q ss_pred ccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 215 LCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 215 l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
...|+.|+.|-..+|.+. ..| .+..+++|+.++++.|.++.
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence 677777777777777776 566 56777777777777777653
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.72 E-value=1.4e-16 Score=136.12 Aligned_cols=218 Identities=24% Similarity=0.262 Sum_probs=136.8
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+-..|+++++.++ .+|..+. ++|+.|++.+|.++.+. . ..++|++|++++|+++.. +. ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 3467999999998 8888663 58999999999987532 2 247899999999998843 33 2467888888
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCC-----------------Cc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLS-----------------NL 146 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------~~ 146 (258)
..|.+. .++.. ..+|+.|++.+|.++ .+|. .+++|+.|++++|.+..++.... -.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp 341 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLP 341 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCCcccccccccccCccccccccc
Confidence 887766 33322 245666666666665 3332 23556666666666654432111 01
Q ss_pred CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226 (258)
Q Consensus 147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 226 (258)
.+|+.|++++|.++..+ . ..++|..|++++|.+. .+|.. .++|+.|++++|++.+ +|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~LP-~---lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccCCCC-C---CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 24555555555554321 1 1234555555555554 23321 2467888888888773 4432 357888888
Q ss_pred cCceeecCCCcccccccchhhhhhcccccCC
Q 035481 227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.++ .+|.. ...|+.|++++|.|+.
T Consensus 410 S~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~ 436 (788)
T PRK15387 410 SGNRLT-SLPML---PSGLLSLSVYRNQLTR 436 (788)
T ss_pred cCCcCC-CCCcc---hhhhhhhhhccCcccc
Confidence 888887 46753 3467888898888864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-19 Score=123.81 Aligned_cols=163 Identities=29% Similarity=0.446 Sum_probs=84.2
Q ss_pred CCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEE
Q 035481 50 NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFI 129 (258)
Q Consensus 50 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 129 (258)
.+..++.|.+++|+++ ..+..++.+.+|+.+++.+|++. ..|..++.+++|+.+++..|.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl----------------- 91 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL----------------- 91 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-----------------
Confidence 3344455555555554 33344444555555555555544 4444444555555555544444
Q ss_pred EcccccceeecCCCCCcCCCcEEEeecccccc-cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 130 DISENSLSGSMVSLSNLSSVEHIYLHNNAING-LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 130 ~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
...+.+++.++.|+.+++.+|.+.. ..++.|..+..|+.|.+++|.+. .+|..+..+++|+.|.+.+|.+.
T Consensus 92 -------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 92 -------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred -------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 4444444444444444444444432 24455555555555556665553 55555555666666666666555
Q ss_pred ccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481 209 GRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241 (258)
Q Consensus 209 ~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 241 (258)
..|..++.+..|++|.+.+|+++ .+|..++.
T Consensus 164 -~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 164 -SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred -hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 44555555555666666666665 45544443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=3.3e-19 Score=122.16 Aligned_cols=158 Identities=26% Similarity=0.372 Sum_probs=140.9
Q ss_pred cCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCce
Q 035481 95 WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL 174 (258)
Q Consensus 95 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 174 (258)
.+..+.++..+.+++|+++ .+|..++.+.+|+.|+++.|++.+.+..+++++.|+.++++-|.+. ..+..|...|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 3446777888888999988 5666788889999999999999999999999999999999988876 5788999999999
Q ss_pred EEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccc
Q 035481 175 TLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYS 253 (258)
Q Consensus 175 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 253 (258)
.||+++|++. ...|+.|..++.|+.|.+++|.+. .+|...+++.+|+.|.+.+|.+. .+|..++.+++|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999999985 468888889999999999999987 88889999999999999999987 68999999999999999999
Q ss_pred ccC
Q 035481 254 LLS 256 (258)
Q Consensus 254 ~~~ 256 (258)
+++
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 985
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=2.2e-16 Score=119.57 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=168.3
Q ss_pred cCCCCccEEECCCCcccccc----CccccCCcccceeecccccc---ccc-------CCcccCCCCCccEEEccCccccC
Q 035481 25 SGCPSLETLDLSNNNFYGQL----FPNYMNLTHLRSLLLDNNNF---SGK-------MTDGLLSSTLLEVLNVSNNKLSG 90 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~---~~~-------~~~~~~~l~~L~~l~l~~~~~~~ 90 (258)
..+..++.+++++|.+.... ...+.+.+.|+..+++.--. ... ..+++..+++|+++++++|-+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 44667888999998875322 23345667888887775321 111 12345556789999999998874
Q ss_pred CCCC----cCCCCCccceEEecCccccCCc-------------CccccCCCCccEEEcccccceee-----cCCCCCcCC
Q 035481 91 DIPH----WIGNFSGLWVLLMSENYLQGSI-------------PVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSS 148 (258)
Q Consensus 91 ~~~~----~l~~l~~L~~l~l~~~~~~~~~-------------~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~ 148 (258)
..+. .+.++..|++|.+.+|.+.... ....++.+.|+.+...+|.+... ...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 4333 3456889999999998775222 22345568899999999988542 335667799
Q ss_pred CcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCcccc----
Q 035481 149 VEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLC---- 216 (258)
Q Consensus 149 L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---- 216 (258)
|+.+.+..|.+... ....+..+++|+.||+.+|.++.. ....+..++.|+.|.+++|.+......++.
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 99999999987532 456778999999999999998643 334566788999999999998765544443
Q ss_pred -CCCcccEEEccCceee----cCCCcccccccchhhhhhccccc
Q 035481 217 -QLRKLGIMDLSHNRLN----GPIPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 217 -~~~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~l~~~~~ 255 (258)
..|+|+.+++.+|.++ ..+..++...+.|..|++++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4689999999999997 23445677899999999999998
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=4.6e-14 Score=107.11 Aligned_cols=230 Identities=25% Similarity=0.254 Sum_probs=165.8
Q ss_pred CCcceEEecCcCccccc---cCcccccCCCCccEEECCCCccc---c-------ccCccccCCcccceeecccccccccC
Q 035481 2 MKELITLDLSRNNFSGE---LSRPIFSGCPSLETLDLSNNNFY---G-------QLFPNYMNLTHLRSLLLDNNNFSGKM 68 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~~ 68 (258)
+..++.+++++|.+... .-...+.+-++|+..++++-.-. . ....++..+|+|++++|+.|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 45688899999976422 12234566789999999864211 1 12234567889999999999876443
Q ss_pred Ccc----cCCCCCccEEEccCccccCC-------------CCCcCCCCCccceEEecCccccCCc----CccccCCCCcc
Q 035481 69 TDG----LLSSTLLEVLNVSNNKLSGD-------------IPHWIGNFSGLWVLLMSENYLQGSI----PVQLGNLVCLE 127 (258)
Q Consensus 69 ~~~----~~~l~~L~~l~l~~~~~~~~-------------~~~~l~~l~~L~~l~l~~~~~~~~~----~~~~~~~~~L~ 127 (258)
... +..+..|+.|.+.+|.+... ......+-+.|+.+.+.+|.+.... ...+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 333 45578899999999988622 1223345678999999998875222 23456678999
Q ss_pred EEEccccccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhh-----cc
Q 035481 128 FIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQI-----NE 193 (258)
Q Consensus 128 ~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~ 193 (258)
.+.+..|.+.. ....+.++++|+.|++.+|.++.. +...++.+++|+++++++|.+......++ ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 99999998864 223566899999999999988643 56777888999999999999865554443 24
Q ss_pred CCCccEEEeeCCeecccC----CccccCCCcccEEEccCcee
Q 035481 194 LSNLHFLLLRGNYLQGRI----PNQLCQLRKLGIMDLSHNRL 231 (258)
Q Consensus 194 ~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~ 231 (258)
.|+|++|.+.+|.++... .......+.|..|+|++|++
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 689999999999887422 22334568999999999998
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=9.4e-15 Score=117.48 Aligned_cols=173 Identities=27% Similarity=0.415 Sum_probs=150.0
Q ss_pred CccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeec
Q 035481 77 LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHN 156 (258)
Q Consensus 77 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~ 156 (258)
-....+++.|.+. .+|..+..+..|+.+.++.|.+. .+|..++.+..|.+++++.|+++..+..++.++ |+.+-+++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 3445677778777 77888888899999999999988 778889999999999999999999888888765 89999999
Q ss_pred ccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCC
Q 035481 157 NAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236 (258)
Q Consensus 157 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 236 (258)
|.++ ..++.+...+.|..||.+.|.+. ..|..+..+.+|+.|.+..|++. .+|..++.+ .|..||++.|++. .+|
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 9988 45667778899999999999985 77788889999999999999988 567777754 5899999999998 899
Q ss_pred cccccccchhhhhhcccccCC
Q 035481 237 SCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 237 ~~~~~l~~L~~l~l~~~~~~~ 257 (258)
-+|++|+.|+.|-|++|++.+
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC
Confidence 999999999999999999864
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.35 E-value=2.8e-13 Score=101.43 Aligned_cols=129 Identities=24% Similarity=0.232 Sum_probs=107.1
Q ss_pred CCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481 123 LVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202 (258)
Q Consensus 123 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 202 (258)
...|+.+|++.|.++.+-+.+.-.|.++.++++.|.+... ..+..+++|+.||+++|.++ ...++-..+-++++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4578899999999988888888889999999999998754 33777899999999999986 44455567789999999
Q ss_pred eCCeecccCCccccCCCcccEEEccCceeecCCC--cccccccchhhhhhcccccCC
Q 035481 203 RGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP--SCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 203 ~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.+.+. ..+..+-+|..||+++|+|. .+. ..++++|.|+.+.+.+|++.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCccc
Confidence 99988633 46778889999999999997 344 468999999999999999976
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=8e-14 Score=108.77 Aligned_cols=206 Identities=22% Similarity=0.197 Sum_probs=136.4
Q ss_pred CCcccceeecccccccccCC-cccCCCCCccEEEccCccccC--CCCCcCCCCCccceEEecCccccCCcCc-cccCCCC
Q 035481 50 NLTHLRSLLLDNNNFSGKMT-DGLLSSTLLEVLNVSNNKLSG--DIPHWIGNFSGLWVLLMSENYLQGSIPV-QLGNLVC 125 (258)
Q Consensus 50 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~--~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~ 125 (258)
++.+|+.+.++++.+..... .....+++++.|+++.|-+.. ........+|+|+.|+++.|.+.-.... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46678888888776652221 345567888888888876551 2334456788888888888876522211 1224567
Q ss_pred ccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCC-ChhhccCCCccEEEe
Q 035481 126 LEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRI-PHQINELSNLHFLLL 202 (258)
Q Consensus 126 L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 202 (258)
|+.|.++.|.++. +......+|+++.|++..|............+..|++|||++|.+.... ......+|.|..|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8888888888763 3334457888888888888422222333345578888999988875332 234567788888888
Q ss_pred eCCeecccC-Ccc-----ccCCCcccEEEccCceeecCCC--cccccccchhhhhhcccccC
Q 035481 203 RGNYLQGRI-PNQ-----LCQLRKLGIMDLSHNRLNGPIP--SCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 203 ~~~~l~~~~-~~~-----l~~~~~L~~l~l~~~~~~~~~~--~~~~~l~~L~~l~l~~~~~~ 256 (258)
+.|.+.+.. |+. ...+++|+.|++..|.+. .++ ..+..+++|+.+.++.|+++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 888776422 222 346788999999998885 333 34667888888888888774
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=1.4e-12 Score=92.46 Aligned_cols=125 Identities=26% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCccceEEecCccccCCcCcccc-CCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEE
Q 035481 98 NFSGLWVLLMSENYLQGSIPVQLG-NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTL 176 (258)
Q Consensus 98 ~l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 176 (258)
+..++++|++.++.+... +.+. .+.+|+.|+++.|.+..+. .+..++.|++|++++|.++.........+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 344556666666655422 1232 3455566666666555432 34445555555555555553322111234555555
Q ss_pred EccCCcccCC-CChhhccCCCccEEEeeCCeecccC---CccccCCCcccEEE
Q 035481 177 DLRDNKLFGR-IPHQINELSNLHFLLLRGNYLQGRI---PNQLCQLRKLGIMD 225 (258)
Q Consensus 177 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~---~~~l~~~~~L~~l~ 225 (258)
++++|.+.+. .-..+..+|+|+.|++.+|.+.+.. ...+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 5555555321 1133444555555555555554321 11233445555554
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=8.8e-12 Score=101.72 Aligned_cols=173 Identities=35% Similarity=0.461 Sum_probs=78.5
Q ss_pred CCccEEEccCccccCCCCCcCCCCC-ccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEe
Q 035481 76 TLLEVLNVSNNKLSGDIPHWIGNFS-GLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYL 154 (258)
Q Consensus 76 ~~L~~l~l~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l 154 (258)
..++.+++.++.++ .++....... +|+.+++..+.+. ..+..+..+++|+.|+++.|.+.+.+......+.++.+++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 34455555555444 3333333332 5555555555544 3233344455555555555555544444334455555555
Q ss_pred ecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481 155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234 (258)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~ 234 (258)
++|.+.... .....+..|+++.+++|... ..+..+...+++..+.+.+|++. ..+..+..++.++.+++++|.++ .
T Consensus 194 s~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~ 269 (394)
T COG4886 194 SGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-S 269 (394)
T ss_pred cCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-c
Confidence 555554321 11122233555555555321 22333444444555554444443 22334444445555555555554 2
Q ss_pred CCcccccccchhhhhhccccc
Q 035481 235 IPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 235 ~~~~~~~l~~L~~l~l~~~~~ 255 (258)
++. ++...+++.|+++++.+
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccc-ccccCccCEEeccCccc
Confidence 333 44555555555555444
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=1.6e-11 Score=100.14 Aligned_cols=174 Identities=35% Similarity=0.446 Sum_probs=93.0
Q ss_pred CCccEEECCCCccccccCccccCC-cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481 28 PSLETLDLSNNNFYGQLFPNYMNL-THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL 106 (258)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~ 106 (258)
+.++.+++.++.++.+. +..... ++|+.|++++|++.. .+..+..++.|+.|+++.|.+. ..+......+.|+.+.
T Consensus 116 ~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCc-cccccchhhcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 45666666666655322 222223 256666666666552 2233455666666666666665 3333333556666666
Q ss_pred ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481 107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186 (258)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 186 (258)
+.++.+. .++........|+.+.+++|.....+..+.....+..+.+..|.+... +..+..+++++.|++++|.++..
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccc
Confidence 6666665 334333334446666666665444444555555555555555554421 34445555666666666666433
Q ss_pred CChhhccCCCccEEEeeCCeec
Q 035481 187 IPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
.. +....+++.|+++++.+.
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cc--ccccCccCEEeccCcccc
Confidence 22 555566666666666554
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.21 E-value=1.6e-11 Score=72.13 Aligned_cols=61 Identities=48% Similarity=0.611 Sum_probs=52.2
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccc
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 64 (258)
|+|++|++++|+++ .++...|.++++|++|++++|.+..+.+..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 67888899988888 78888888889999999998888877778888888888888888764
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=6.2e-13 Score=107.24 Aligned_cols=168 Identities=30% Similarity=0.450 Sum_probs=77.1
Q ss_pred EECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccc
Q 035481 33 LDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYL 112 (258)
Q Consensus 33 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 112 (258)
.+++.|.+. ..+..+..+-.|+.+.+++|.+. ..+..++.+..|++++++.|++. ..|..++.++ |+.+.+.+|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 444444443 22333333444444455554444 33444444455555555555444 3344443333 45555555554
Q ss_pred cCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhc
Q 035481 113 QGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQIN 192 (258)
Q Consensus 113 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 192 (258)
+ ..|..++....|..+|.+.|.+...+..+..+.+|+.+.+..|.+...+. .+. .-.|..||++.|++. .+|..|.
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCcee-ecchhhh
Confidence 4 34444444444555555555554444444444455555555554443222 122 223444555555543 4444455
Q ss_pred cCCCccEEEeeCCeec
Q 035481 193 ELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 193 ~~~~L~~L~l~~~~l~ 208 (258)
+++.|++|-|.+|.++
T Consensus 232 ~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhheeeeeccCCCC
Confidence 5555555555555544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1.7e-11 Score=87.07 Aligned_cols=106 Identities=29% Similarity=0.312 Sum_probs=24.3
Q ss_pred CCccEEEcccccceeecCCCC-CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEe
Q 035481 124 VCLEFIDISENSLSGSMVSLS-NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLL 202 (258)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 202 (258)
.+++.|++.++.+..+- .+. .+.+++.|++++|.++.. +.+..++.|++|++++|.++.........+|+|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 34455555555554332 222 344555555555555433 23444555555555555554222111123455555555
Q ss_pred eCCeecccC-CccccCCCcccEEEccCceee
Q 035481 203 RGNYLQGRI-PNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 203 ~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++|++.+.. ...+..+++|+.|++.+|++.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555554311 133444555555555555554
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.3e-12 Score=102.22 Aligned_cols=206 Identities=22% Similarity=0.250 Sum_probs=93.0
Q ss_pred CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCc-ccCCCCC
Q 035481 2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTD-GLLSSTL 77 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~ 77 (258)
+.+|+.+.+.++.+. ..+. .....+++++.|++++|=+.... ......+|+|+.|+++.|.+..-... .-..+++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 345566666666554 2221 33455666666666665332111 11123456666666666654311111 1113455
Q ss_pred ccEEEccCccccCC-CCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec--CCCCCcCCCcEEEe
Q 035481 78 LEVLNVSNNKLSGD-IPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYL 154 (258)
Q Consensus 78 L~~l~l~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l 154 (258)
++.|.++.|.++.. ....+..+|+|+.|.+..|...........-+..|+.||+++|.+-... .....++.|+.+++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 66666666555411 1122334566666666555321111122223445566666666554433 23445555666666
Q ss_pred ecccccccC-ccc-----hhcCCCceEEEccCCcccCC-CChhhccCCCccEEEeeCCeec
Q 035481 155 HNNAINGLI-PIA-----LLRSSTLLTLDLRDNKLFGR-IPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 155 ~~~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
+.+++.+.. +++ ....+.|+.|++..|.+.+. ....+..+++|+.|.+..|.+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 655554331 111 12334555555555554211 1122333444555554444443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.16 E-value=1.9e-11 Score=71.81 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=29.4
Q ss_pred CccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccc
Q 035481 196 NLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL 254 (258)
Q Consensus 196 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 254 (258)
+|++|++++|++....+..|..+++|++|++++|.++...+..|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555544444455555555555555555543333445555555555555554
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=4.5e-11 Score=104.83 Aligned_cols=108 Identities=31% Similarity=0.354 Sum_probs=76.1
Q ss_pred CCcceEEecCcCc--cccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCcc
Q 035481 2 MKELITLDLSRNN--FSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE 79 (258)
Q Consensus 2 ~~~L~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 79 (258)
+|+|++|-+.++. +. .++..+|..+|.|+.||+++|.-....|..++++-+||+|++++..+. ..|..+..+..|.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 5667777777765 44 677777778888888888876544566777777788888888887776 5667777777788
Q ss_pred EEEccCccccCCCCCcCCCCCccceEEecCcc
Q 035481 80 VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENY 111 (258)
Q Consensus 80 ~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 111 (258)
+|++..+......+.....+++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 88777665443445555557778887775543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=9.6e-11 Score=100.31 Aligned_cols=106 Identities=28% Similarity=0.470 Sum_probs=84.5
Q ss_pred CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481 149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228 (258)
Q Consensus 149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 228 (258)
++.|++++|.+.+..+..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66778888888777777888888888888888888777888888888888888888888888888888888888888888
Q ss_pred ceeecCCCcccccc-cchhhhhhcccc
Q 035481 229 NRLNGPIPSCLGNV-SSWREVIDDYSL 254 (258)
Q Consensus 229 ~~~~~~~~~~~~~l-~~L~~l~l~~~~ 254 (258)
|.+++.+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 88888888776653 345566666654
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=4.8e-11 Score=89.63 Aligned_cols=129 Identities=22% Similarity=0.200 Sum_probs=99.6
Q ss_pred CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481 99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 178 (258)
...|+++++++|.++ .+.++..-.|.++.|+++.|.+..+.. +..+++|+++++++|.++... +.--.+-++.+|.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhh-hhHhhhcCEeeeeh
Confidence 356888899998887 566777778999999999999876543 778889999999999887542 22234568889999
Q ss_pred cCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceee
Q 035481 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++|.+. ....+..+=+|..||+++|++.... ...++++|.|+++.|.+|.+.
T Consensus 360 a~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 999873 2344566667889999999887432 467889999999999999987
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=1.7e-10 Score=101.34 Aligned_cols=128 Identities=24% Similarity=0.283 Sum_probs=98.5
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCc--cccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN--FYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
..+.+.+-++.+. .++.. ..++.|++|-+..+. +.......|..+|.|+.|++++|.--...|..++.+.+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 3456666666554 44433 346689999999885 554555568889999999999876555778888999999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENS 135 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 135 (258)
++.++.+. .+|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999888 888999999999999998877554556666678999999887654
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=4.8e-10 Score=96.06 Aligned_cols=86 Identities=37% Similarity=0.561 Sum_probs=81.6
Q ss_pred CceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481 172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD 251 (258)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~ 251 (258)
.++.|+|+++.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 035481 252 YSLLSG 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
+|.++|
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 999986
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.92 E-value=2.1e-10 Score=84.95 Aligned_cols=230 Identities=19% Similarity=0.183 Sum_probs=157.5
Q ss_pred CCCccEEECCCCccccccCccc----cCCcccceeecccccccc----------cCCcccCCCCCccEEEccCccccCCC
Q 035481 27 CPSLETLDLSNNNFYGQLFPNY----MNLTHLRSLLLDNNNFSG----------KMTDGLLSSTLLEVLNVSNNKLSGDI 92 (258)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~l~l~~~~~~~~~ 92 (258)
+..+..+++++|.|.......+ .+-..|+..+++.-.... ...+++..+++|+.+++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6678888999988764433333 344667777766432111 12245677899999999999887555
Q ss_pred CC----cCCCCCccceEEecCccccCCcCc-------------cccCCCCccEEEcccccceeecC-----CCCCcCCCc
Q 035481 93 PH----WIGNFSGLWVLLMSENYLQGSIPV-------------QLGNLVCLEFIDISENSLSGSMV-----SLSNLSSVE 150 (258)
Q Consensus 93 ~~----~l~~l~~L~~l~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~L~ 150 (258)
++ .+.+.+.|.+|.+++|.+...... ..+.-|.|+.+++.+|.+...+. .+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 54 345678899999998876422211 22345789999999998754332 233447899
Q ss_pred EEEeeccccccc-----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccCCcccc-----
Q 035481 151 HIYLHNNAINGL-----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLC----- 216 (258)
Q Consensus 151 ~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----- 216 (258)
.+.+..|.|... ....+..+.+|+.||+++|.++.. ...++...+.|+.|.+.+|-++.....++.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 999999988643 223456789999999999998643 334556678899999999988754433221
Q ss_pred -CCCcccEEEccCceeecCCCcc-------cccccchhhhhhcccccC
Q 035481 217 -QLRKLGIMDLSHNRLNGPIPSC-------LGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 217 -~~~~L~~l~l~~~~~~~~~~~~-------~~~l~~L~~l~l~~~~~~ 256 (258)
..|+|..|-..+|.+.+.+... =.++|-|..+.+.+|.|.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3478888888888876433211 136888899999999875
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=1.6e-10 Score=94.77 Aligned_cols=126 Identities=28% Similarity=0.304 Sum_probs=61.3
Q ss_pred cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481 52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI 131 (258)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 131 (258)
..++.+.++.+.+.. ....+..+.+++.+++.+|.+. .+...+..+++|+++++.+|.++.. ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 344444445444432 1222444555666666665554 2222244556666666666655422 22334444566666
Q ss_pred ccccceeecCCCCCcCCCcEEEeecccccccCc-cchhcCCCceEEEccCCcc
Q 035481 132 SENSLSGSMVSLSNLSSVEHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKL 183 (258)
Q Consensus 132 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 183 (258)
.+|.+.... .+..+..++.+++++|.+..... . ...+..++.+.+.+|.+
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 666554432 22234555556666665554322 1 34445555555555554
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.85 E-value=3.6e-11 Score=100.00 Aligned_cols=179 Identities=25% Similarity=0.157 Sum_probs=118.2
Q ss_pred CcccCCCCCccEEEccCccccCCCCCcCCCC-CccceEEecCcc--cc-------CCcCccccCCCCccEEEccccccee
Q 035481 69 TDGLLSSTLLEVLNVSNNKLSGDIPHWIGNF-SGLWVLLMSENY--LQ-------GSIPVQLGNLVCLEFIDISENSLSG 138 (258)
Q Consensus 69 ~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l-~~L~~l~l~~~~--~~-------~~~~~~~~~~~~L~~L~l~~~~~~~ 138 (258)
|-.+..+.+|+.|.+.++++.. ...+..+ ..|++|.+.+.- +. |.+...+. .-.|.+.++++|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHHh
Confidence 3345566788888888887763 1222222 346666554321 11 11111111 1246666777777765
Q ss_pred ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCC
Q 035481 139 SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQL 218 (258)
Q Consensus 139 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 218 (258)
+-..+.-++.++.|+++.|.+++. ..+..++.|.+|||++|.+..+..-...++. |+.|.+++|.+++. ..++++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 555666678888999999988754 3778889999999999988644333344444 89999999988743 456788
Q ss_pred CcccEEEccCceeecCC-Ccccccccchhhhhhccccc
Q 035481 219 RKLGIMDLSHNRLNGPI-PSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 219 ~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~ 255 (258)
.+|..||+++|-+.+-- ..-++.+.+|+.|.+.||++
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 89999999999876311 23477888999999999987
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4e-11 Score=89.82 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=112.8
Q ss_pred CccEEECCCCccccc-cCccccCCcccceeecccccccccCCcccCCCCCccEEEccCcc-ccC-CCCCcCCCCCccceE
Q 035481 29 SLETLDLSNNNFYGQ-LFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK-LSG-DIPHWIGNFSGLWVL 105 (258)
Q Consensus 29 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~-~~~~~l~~l~~L~~l 105 (258)
.|+.+|++...++.. ....++.|.+|+.|.+.+.++.+.....++.-..|+.++++.+. ++. .....+.+|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666421 12234556777777777777665555555666777777777643 331 122345677888888
Q ss_pred EecCccccCCcCc-cccC-CCCccEEEcccccce----eecCCCCCcCCCcEEEeecccc-cccCccchhcCCCceEEEc
Q 035481 106 LMSENYLQGSIPV-QLGN-LVCLEFIDISENSLS----GSMVSLSNLSSVEHIYLHNNAI-NGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 106 ~l~~~~~~~~~~~-~~~~-~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l 178 (258)
++.+|........ .+.+ -++|..|+++++.-. +..--...++++.+|++++|.. +......+...+.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 8887765433211 1111 145677777766432 1111234778888888888753 3323344556788888888
Q ss_pred cCCcccCCCChh---hccCCCccEEEeeCCeecccCCccccCCCccc
Q 035481 179 RDNKLFGRIPHQ---INELSNLHFLLLRGNYLQGRIPNQLCQLRKLG 222 (258)
Q Consensus 179 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 222 (258)
+.|-. .+|.. +...|.|.+|++.||--.+...-..+.+++|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 88753 45543 35668899999988743322222333455554
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=8.1e-10 Score=90.56 Aligned_cols=218 Identities=28% Similarity=0.275 Sum_probs=90.1
Q ss_pred CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceE
Q 035481 26 GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVL 105 (258)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l 105 (258)
.++++..+++.+|.+..+. ..+..+++|++|++++|.|+.. ..+..++.|+.|++.+|.+... ..+..++.|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence 3455555555555553221 1134455555555555555422 2233444455555555554311 223334555555
Q ss_pred EecCccccCCcCcc-ccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCC--CceEEEccCCc
Q 035481 106 LMSENYLQGSIPVQ-LGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSS--TLLTLDLRDNK 182 (258)
Q Consensus 106 ~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~ 182 (258)
.+.++.+....+ . ...+.+++.+.+..|.+.... .+.....+..+++..|.++...+ +.... .|+.++++++.
T Consensus 168 ~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIEN-DELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhh-hhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 555555442211 1 233444454555544443211 11111222222444444432211 11111 25555555555
Q ss_pred ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec--CCC--cccccccchhhhhhccccc
Q 035481 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG--PIP--SCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~--~~~~~l~~L~~l~l~~~~~ 255 (258)
+. ..+..+...+.+..|++.++++... ..+...+.+..+....+.+.. ... ......+.++.+.+.++++
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 53 2213344445555555555554421 122233344444444444331 011 1133445555555555544
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-11 Score=90.82 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=64.0
Q ss_pred ccEEEccCccccC-CCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccc-ceeec--CCCCCcCCCcEEE
Q 035481 78 LEVLNVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENS-LSGSM--VSLSNLSSVEHIY 153 (258)
Q Consensus 78 L~~l~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~l~ 153 (258)
++++|+++..++. ..-..+..|.+|+.+.+.+..+...+...++.-.+|+.++++.+. ++... .-+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4455555443331 111223345555555555555544444444445555555554432 22211 1123455555555
Q ss_pred eecccccccCccc-h-hcCCCceEEEccCCccc---CCCChhhccCCCccEEEeeCC-eecccCCccccCCCcccEEEcc
Q 035481 154 LHNNAINGLIPIA-L-LRSSTLLTLDLRDNKLF---GRIPHQINELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIMDLS 227 (258)
Q Consensus 154 l~~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l~l~ 227 (258)
+++|..+.....+ + .-.++++.|+++|+.-. ..+..-...+|+|..||+++| .++......|-+++-|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 5555443211110 0 11234455555554321 111122234555555555555 2222222333444555555555
Q ss_pred Cce
Q 035481 228 HNR 230 (258)
Q Consensus 228 ~~~ 230 (258)
+|.
T Consensus 347 RCY 349 (419)
T KOG2120|consen 347 RCY 349 (419)
T ss_pred hhc
Confidence 554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=1.4e-09 Score=90.77 Aligned_cols=158 Identities=23% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCcCCCCCccceEEecCccccCCcCccccC-CCCccEEEccccc--cee----ecCCCC---CcCCCcEEEeeccccccc
Q 035481 93 PHWIGNFSGLWVLLMSENYLQGSIPVQLGN-LVCLEFIDISENS--LSG----SMVSLS---NLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 93 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~--~~~----~~~~~~---~~~~L~~l~l~~~~~~~~ 162 (258)
|-.+..+.+|+.|.+.++.+... ..+.. -.+|+.|...+.. +.+ ....+. .+..|...++++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 44566678888888888776421 11111 1234444322211 111 111121 2346677888888887 4
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV 242 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l 242 (258)
+...+.-++.++.|+|+.|++++.. .+..+++|++||+++|.+....--....|. |..|.+++|.++. .-.+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHhh
Confidence 5677788899999999999997443 788999999999999999844333444555 9999999999983 3458899
Q ss_pred cchhhhhhcccccCCC
Q 035481 243 SSWREVIDDYSLLSGF 258 (258)
Q Consensus 243 ~~L~~l~l~~~~~~~~ 258 (258)
++|+.|++++|-|.++
T Consensus 254 ksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhccchhHhhhhcc
Confidence 9999999999998764
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=1.8e-08 Score=74.93 Aligned_cols=230 Identities=23% Similarity=0.198 Sum_probs=155.4
Q ss_pred CCcceEEecCcCccccccC---cccccCCCCccEEECCCCccc----------cccCccccCCcccceeecccccccccC
Q 035481 2 MKELITLDLSRNNFSGELS---RPIFSGCPSLETLDLSNNNFY----------GQLFPNYMNLTHLRSLLLDNNNFSGKM 68 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~ 68 (258)
+..++.+++|+|.+..+.. ...+.+-++|+..+++.-... .....++..||+|++.+++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4568889999998753222 223455678888888764221 122345678999999999999876443
Q ss_pred Cc----ccCCCCCccEEEccCccccCCCCC-------------cCCCCCccceEEecCccccCCcCc-----cccCCCCc
Q 035481 69 TD----GLLSSTLLEVLNVSNNKLSGDIPH-------------WIGNFSGLWVLLMSENYLQGSIPV-----QLGNLVCL 126 (258)
Q Consensus 69 ~~----~~~~l~~L~~l~l~~~~~~~~~~~-------------~l~~l~~L~~l~l~~~~~~~~~~~-----~~~~~~~L 126 (258)
+. .++....|.+|.+++|.+....-. ...+-|.|+.+.+..|.+. ..+. .+..=..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 33 355668899999999988632222 2234578999999998875 2222 12222478
Q ss_pred cEEEcccccceee------cCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCCCChhh-----
Q 035481 127 EFIDISENSLSGS------MVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGRIPHQI----- 191 (258)
Q Consensus 127 ~~L~l~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----- 191 (258)
+.+.+.+|.+... ......+.+|+.|++..|.++.. ....++.++.|+.|.+.+|.+......++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 9999999998642 22345778999999999988643 45666778889999999998865444332
Q ss_pred -ccCCCccEEEeeCCeecc-cCCc----cc--cCCCcccEEEccCceee
Q 035481 192 -NELSNLHFLLLRGNYLQG-RIPN----QL--CQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 192 -~~~~~L~~L~l~~~~l~~-~~~~----~l--~~~~~L~~l~l~~~~~~ 232 (258)
...|+|..|...+|...+ .+.. .+ ...|-|..+.+.||++.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 135889999988885532 2111 11 24677888888888886
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=1e-08 Score=77.17 Aligned_cols=181 Identities=19% Similarity=0.157 Sum_probs=86.7
Q ss_pred CCccEEEccCcccc--CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcE
Q 035481 76 TLLEVLNVSNNKLS--GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEH 151 (258)
Q Consensus 76 ~~L~~l~l~~~~~~--~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 151 (258)
..++.+++++|.+. +.+...+.++|.|+.|+++.|.+...+...-.-..+|+.+.+.+..+.. ........|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 44555555555554 1222234455666666666555542222111123455555555554432 1122234455555
Q ss_pred EEeecccccccC--ccchh-cCCCceEEEccCCcccC--CCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEE
Q 035481 152 IYLHNNAINGLI--PIALL-RSSTLLTLDLRDNKLFG--RIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMD 225 (258)
Q Consensus 152 l~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~ 225 (258)
++++.|.+.... ..... ..+.+.+++...|.... .....-...|++..+.+..|.+.+.. ....+.+|.+.-|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 555555332210 11111 12345555555554311 01111133466777777777654322 33455556666677
Q ss_pred ccCceeec-CCCcccccccchhhhhhcccccC
Q 035481 226 LSHNRLNG-PIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 226 l~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
|+.+.+.+ +-.+.+.++++|..|.+.++++.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 77776652 11234666777777777777663
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.44 E-value=2.8e-07 Score=65.65 Aligned_cols=102 Identities=25% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEc
Q 035481 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDL 226 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l 226 (258)
....+++.+|.+.. ...+++++.|.+|.+.+|+++.+.|..-.-.|+|+.|.+.+|.+.+.. .+.+..||+|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 33455566655542 244556666666666666666554444444566666666666655322 234556666666666
Q ss_pred cCceeecCC---Ccccccccchhhhhhc
Q 035481 227 SHNRLNGPI---PSCLGNVSSWREVIDD 251 (258)
Q Consensus 227 ~~~~~~~~~---~~~~~~l~~L~~l~l~ 251 (258)
-+|.++..- ...+.++|+|+.|++.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehh
Confidence 666665211 1345566666666654
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=8.9e-09 Score=68.62 Aligned_cols=89 Identities=25% Similarity=0.304 Sum_probs=51.2
Q ss_pred cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481 146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225 (258)
Q Consensus 146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 225 (258)
...|..+++++|.+.++.+......+.++.+++++|.+. .+|..+..+|.|+.|.++.|.+. ..|+.+..+.++-.|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344555566666665444444444456666666666664 55555666666666666666665 4455555555566666
Q ss_pred ccCceeecCCCc
Q 035481 226 LSHNRLNGPIPS 237 (258)
Q Consensus 226 l~~~~~~~~~~~ 237 (258)
.-+|... .+|.
T Consensus 130 s~~na~~-eid~ 140 (177)
T KOG4579|consen 130 SPENARA-EIDV 140 (177)
T ss_pred CCCCccc-cCcH
Confidence 6666554 4443
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=6e-08 Score=73.12 Aligned_cols=183 Identities=17% Similarity=0.085 Sum_probs=86.0
Q ss_pred CCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccC-CCCCcCCCCCccc
Q 035481 27 CPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSG-DIPHWIGNFSGLW 103 (258)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~-~~~~~l~~l~~L~ 103 (258)
+..++.+|+.+|.++... ..-+.++|.|++|++++|++...+........+|+++.+.+..+.. .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 455666666666654321 1223456666666666666542211111244566666666554431 1222334455555
Q ss_pred eEEecCccccCCc--CccccC-CCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccccc-CccchhcCCCceEE
Q 035481 104 VLLMSENYLQGSI--PVQLGN-LVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTL 176 (258)
Q Consensus 104 ~l~l~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L 176 (258)
.+.++.|.+.... ...... -+.++++.+..|.... .......++++..+-+..|.+.+. ....+-..+.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 5555554322110 001111 1233333333333211 111122346666666666655432 12222333444566
Q ss_pred EccCCcccC-CCChhhccCCCccEEEeeCCeecc
Q 035481 177 DLRDNKLFG-RIPHQINELSNLHFLLLRGNYLQG 209 (258)
Q Consensus 177 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~ 209 (258)
+|+.+.+.+ ..-.++.++|.|..|.++.+.+.+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 677776632 222456677888888888777654
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.32 E-value=3e-06 Score=57.75 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=55.6
Q ss_pred cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCC
Q 035481 19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGN 98 (258)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~ 98 (258)
++..+|.++.+|+.+.+.. .+..+...+|.++..++.+.+..+ +......++..+.+++.+.+.. .+.......+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4556677777777777764 455566666777777777777664 5445555666666777777755 333233445666
Q ss_pred CCccceEEecCccccCCcCccccCCCCccEEEccc
Q 035481 99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE 133 (258)
Q Consensus 99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 133 (258)
+++++.+.+..+ +.......+..+ .++.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777777777543 332334455555 677776654
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=1.4e-07 Score=50.80 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 195 SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 195 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47888888888887 45556788888888888888876
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.29 E-value=3.6e-06 Score=57.37 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=35.5
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
.+|+.+.+.. .+. .++...|.++++++.+.+.++ +..+...+|.+++.++.+.+.. .+.......+..+.+++.+.
T Consensus 12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 3444444443 233 444455555555555555443 3334444444554455555543 22222333344445555555
Q ss_pred ccCccccCCCCCcCCCCCccceEEec
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMS 108 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~ 108 (258)
+..+ +.......+.++ +++.+.+.
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5332 221222333343 45555443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.24 E-value=3.6e-06 Score=60.13 Aligned_cols=84 Identities=21% Similarity=0.233 Sum_probs=35.5
Q ss_pred CCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee--cCCCCCcCCCcEEEeeccccccc---CccchhcCC
Q 035481 97 GNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS--MVSLSNLSSVEHIYLHNNAINGL---IPIALLRSS 171 (258)
Q Consensus 97 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~ 171 (258)
..+++|..|.+.+|.++...|..-..+++|..|.+.+|.+..+ ......|+.|++|.+-+|.++.. -.-.++..|
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 3344444444444444433333223334444444444444332 22333444555555555544321 112333445
Q ss_pred CceEEEccC
Q 035481 172 TLLTLDLRD 180 (258)
Q Consensus 172 ~L~~L~l~~ 180 (258)
+|++||.++
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 555555444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1e-06 Score=47.42 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=24.3
Q ss_pred CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
++|++|++++|.++ .++..+..+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777776 44545677777777777777766
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=5.7e-09 Score=81.76 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=44.6
Q ss_pred CcCCCcEEEeeccc-ccccCcc-chhcCCCceEEEccCCcccCC--CChhhccCCCccEEEeeCCee-cccCCcc----c
Q 035481 145 NLSSVEHIYLHNNA-INGLIPI-ALLRSSTLLTLDLRDNKLFGR--IPHQINELSNLHFLLLRGNYL-QGRIPNQ----L 215 (258)
Q Consensus 145 ~~~~L~~l~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l-~~~~~~~----l 215 (258)
++.+|+.+-+..|. +++.... .-.+++.|+.+++.++..... +...-.+++.|+.+.++.|.. ++..... -
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34555555555553 2211111 112345555555555543211 111123455555555555532 2221111 1
Q ss_pred cCCCcccEEEccCceee-cCCCcccccccchhhhhhccc
Q 035481 216 CQLRKLGIMDLSHNRLN-GPIPSCLGNVSSWREVIDDYS 253 (258)
Q Consensus 216 ~~~~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~~ 253 (258)
+....++.+.+++++.+ +...+.+..+++|+.+++-+|
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 22344555555555432 333344455555555544443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=1.4e-05 Score=64.17 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=31.8
Q ss_pred cCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCc
Q 035481 49 MNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSEN 110 (258)
Q Consensus 49 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~ 110 (258)
..+.+++.|++++|.++. .|. -..+|+.|.++++.-....|..+ .++|+.|.+.+|
T Consensus 49 ~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 345677777777776652 231 23457777776643322444333 246777777665
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.02 E-value=5.5e-07 Score=60.27 Aligned_cols=107 Identities=17% Similarity=0.169 Sum_probs=79.9
Q ss_pred CCcEEEeecccccccCcc---chhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481 148 SVEHIYLHNNAINGLIPI---ALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l 224 (258)
.+..++++.|.+.. +++ .+..-.+|+.+++++|.+.+..+......|-++.|.+..|.+. ..|..+..++.|+.+
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 34456667776542 222 2334467788899999986444444455678999999999998 567779999999999
Q ss_pred EccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 225 DLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 225 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+++.|.+. +.|..+..+.++..|+..+|.+..
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence 99999997 788888788888888888887643
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.98 E-value=7.4e-07 Score=76.96 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=91.0
Q ss_pred CccceEEecCcccc-CCcCccc-cCCCCccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481 100 SGLWVLLMSENYLQ-GSIPVQL-GNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175 (258)
Q Consensus 100 ~~L~~l~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 175 (258)
.+|++|++.+...- ..-+..+ .-+|.|+.|.+.+-.+.. +.....++++|..||++++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46788887664321 1111112 236888888887765532 334455788888888888887754 56778888888
Q ss_pred EEccCCcccC-CCChhhccCCCccEEEeeCCeecccC------CccccCCCcccEEEccCceeecCCCc-ccccccchhh
Q 035481 176 LDLRDNKLFG-RIPHQINELSNLHFLLLRGNYLQGRI------PNQLCQLRKLGIMDLSHNRLNGPIPS-CLGNVSSWRE 247 (258)
Q Consensus 176 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~------~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~ 247 (258)
|.+.+-.+.. .....+..+++|+.||+|........ .+.-..+|.|+.||.|++.+.+.+-+ -+...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8887776643 23345667888888888876543211 11222467888888888877643332 2334455554
Q ss_pred hh
Q 035481 248 VI 249 (258)
Q Consensus 248 l~ 249 (258)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=0.00019 Score=57.94 Aligned_cols=14 Identities=7% Similarity=0.033 Sum_probs=6.7
Q ss_pred CcceEEecCcCccc
Q 035481 3 KELITLDLSRNNFS 16 (258)
Q Consensus 3 ~~L~~L~l~~~~l~ 16 (258)
++++.|++++|.++
T Consensus 52 ~~l~~L~Is~c~L~ 65 (426)
T PRK15386 52 RASGRLYIKDCDIE 65 (426)
T ss_pred cCCCEEEeCCCCCc
Confidence 34445555555444
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.90 E-value=2.1e-07 Score=73.19 Aligned_cols=230 Identities=17% Similarity=0.105 Sum_probs=132.7
Q ss_pred CCCcceEEecCcCc-cccccCcccccCCCCccEEECCCC-ccccccCccc-cCCcccceeeccccc-ccccCCcc-cCCC
Q 035481 1 EMKELITLDLSRNN-FSGELSRPIFSGCPSLETLDLSNN-NFYGQLFPNY-MNLTHLRSLLLDNNN-FSGKMTDG-LLSS 75 (258)
Q Consensus 1 ~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~-~~~l 75 (258)
+||++.+|.+.++. +++..-..+-..++.++.+++..| .++......+ ..+++|.+++++++. +....... ...+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 47788888777764 443333344456788888888875 3443332322 357788888887763 22211111 1112
Q ss_pred CCcc--------------------------EEEccCcc-ccCCC-CCcCCCCCccceEEecCccccCCcC--ccccCCCC
Q 035481 76 TLLE--------------------------VLNVSNNK-LSGDI-PHWIGNFSGLWVLLMSENYLQGSIP--VQLGNLVC 125 (258)
Q Consensus 76 ~~L~--------------------------~l~l~~~~-~~~~~-~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~ 125 (258)
..++ .+++..+. ++... ...-..+..|+.+...++...+..+ ..-.++.+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 2222 22222221 11000 0111235566777666544321211 12246789
Q ss_pred ccEEEcccccc-eee--cCCCCCcCCCcEEEeecccccc--cCccchhcCCCceEEEccCCccc-CC----CChhhccCC
Q 035481 126 LEFIDISENSL-SGS--MVSLSNLSSVEHIYLHNNAING--LIPIALLRSSTLLTLDLRDNKLF-GR----IPHQINELS 195 (258)
Q Consensus 126 L~~L~l~~~~~-~~~--~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~-~~----~~~~~~~~~ 195 (258)
|+.+.+..++. ++. ..--.+++.|+.+++..+.... .+.....+++.++.+.++.|... +. ....-.+..
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 99999988864 222 1222378899999999886432 13344567899999999988652 11 112234567
Q ss_pred CccEEEeeCCee-cccCCccccCCCcccEEEccCce
Q 035481 196 NLHFLLLRGNYL-QGRIPNQLCQLRKLGIMDLSHNR 230 (258)
Q Consensus 196 ~L~~L~l~~~~l-~~~~~~~l~~~~~L~~l~l~~~~ 230 (258)
.+..+.+++|.. ++.....+..|++|+++++-+|.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 899999999954 45556778889999999998886
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.6e-05 Score=68.93 Aligned_cols=133 Identities=26% Similarity=0.232 Sum_probs=87.9
Q ss_pred cceEEecCcCc-cccccCcccccCCCCccEEECCCCcccccc-CccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 4 ELITLDLSRNN-FSGELSRPIFSGCPSLETLDLSNNNFYGQL-FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 4 ~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+|++|++++.. +....+..+..-+|.|+.|.+.+-.+.... .....++|+|..||+++..++.. ..++.+.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 68888888754 222344444556899999999887664222 12235678999999999888754 556778888888
Q ss_pred EccCccccC-CCCCcCCCCCccceEEecCccccCCc------CccccCCCCccEEEccccccee
Q 035481 82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSI------PVQLGNLVCLEFIDISENSLSG 138 (258)
Q Consensus 82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~ 138 (258)
.+.+-.+.. .....+.++++|+.|+++........ -+.-..+|.|+.||.+++.+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 777655542 22235567889999999765533111 1122347899999999888754
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.57 E-value=2.6e-06 Score=71.48 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=16.5
Q ss_pred ccEEEeeCCeec-ccCCccccC-CCcccEEEccCcee
Q 035481 197 LHFLLLRGNYLQ-GRIPNQLCQ-LRKLGIMDLSHNRL 231 (258)
Q Consensus 197 L~~L~l~~~~l~-~~~~~~l~~-~~~L~~l~l~~~~~ 231 (258)
++.|+++.|... ......... +..++.+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 466666666432 111112111 45566666666553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=4.4e-05 Score=56.83 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=41.2
Q ss_pred CCcEEEeecccccccCccchhcCCCceEEEccCC--cccCCCChhhccCCCccEEEeeCCeeccc-CCccccCCCcccEE
Q 035481 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDN--KLFGRIPHQINELSNLHFLLLRGNYLQGR-IPNQLCQLRKLGIM 224 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~l 224 (258)
.++.+++.+..++.. ..++.+++|+.|.+++| ++..........+|+|++|.+++|++... .-..+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 334444444444322 23445566666666666 33333333333446666666666665521 01223344556666
Q ss_pred EccCceee
Q 035481 225 DLSHNRLN 232 (258)
Q Consensus 225 ~l~~~~~~ 232 (258)
++..|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 66666655
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=3.7e-06 Score=63.15 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=75.5
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEV 80 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 80 (258)
+.+++.|++++++++ .+. +..+++.|+.|.|+-|+|+.. ..+..|.+|++|+|..|.|... ....+..+++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 456788999999998 454 456899999999999999754 4578899999999999988643 2245677899999
Q ss_pred EEccCccccCCCC-----CcCCCCCccceEE
Q 035481 81 LNVSNNKLSGDIP-----HWIGNFSGLWVLL 106 (258)
Q Consensus 81 l~l~~~~~~~~~~-----~~l~~l~~L~~l~ 106 (258)
|.+..|.-..... ..++.+|+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9988876542222 2355678888885
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=6.1e-06 Score=61.99 Aligned_cols=100 Identities=24% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc-CccchhcCCCceEEE
Q 035481 99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTLD 177 (258)
Q Consensus 99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~ 177 (258)
+.+.++|+++++.+..+ .....++.|+.|.++-|+++.. ..+..|++|++|++..|.|.++ ....+.++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34455666666655422 2334556666666666665433 2455566666666666666543 223455666666666
Q ss_pred ccCCcccCCCC-----hhhccCCCccEEE
Q 035481 178 LRDNKLFGRIP-----HQINELSNLHFLL 201 (258)
Q Consensus 178 l~~~~~~~~~~-----~~~~~~~~L~~L~ 201 (258)
|..|.-....+ ..+..+|+|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 66665432211 2344556666654
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=0.00016 Score=53.88 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=61.2
Q ss_pred CCceEEEccCCcccCCCChhhccCCCccEEEeeCC--eecccCCccccCCCcccEEEccCceeec-CCCcccccccchhh
Q 035481 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN--YLQGRIPNQLCQLRKLGIMDLSHNRLNG-PIPSCLGNVSSWRE 247 (258)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~ 247 (258)
..++.+++.+..++.. ..+..+|+|++|.++.| +.....+.....+|+|+++++++|++.. .....++++++|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4566666777766422 34567789999999999 6665555556678999999999999872 11134667788889
Q ss_pred hhhcccccC
Q 035481 248 VIDDYSLLS 256 (258)
Q Consensus 248 l~l~~~~~~ 256 (258)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 999888765
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=5.8e-05 Score=54.10 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=38.9
Q ss_pred CCcEEEeecccccccCccchhcCCCceEEEccCCcccCC-CChhhc-cCCCccEEEeeCC-eecccCCccccCCCcccEE
Q 035481 148 SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR-IPHQIN-ELSNLHFLLLRGN-YLQGRIPNQLCQLRKLGIM 224 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~-~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~l 224 (258)
.++.++.+++.+..+..+.+.+++.++.|.+.+|.-.+. ..+-+. ..++|+.|++++| ++++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455566666665555555555556666665555542110 001111 2355555555555 4444444444455555555
Q ss_pred Ecc
Q 035481 225 DLS 227 (258)
Q Consensus 225 ~l~ 227 (258)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 444
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.84 E-value=3.2e-05 Score=64.99 Aligned_cols=31 Identities=16% Similarity=-0.058 Sum_probs=15.8
Q ss_pred hccCCCccEEEeeCCeecccC-CccccCCCcc
Q 035481 191 INELSNLHFLLLRGNYLQGRI-PNQLCQLRKL 221 (258)
Q Consensus 191 ~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L 221 (258)
...+++++.+.+.++...+.. ...+..|+.|
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 455667777666666533222 2334444444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.79 E-value=0.00074 Score=30.19 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=12.2
Q ss_pred cccEEEccCceeecCCCccccc
Q 035481 220 KLGIMDLSHNRLNGPIPSCLGN 241 (258)
Q Consensus 220 ~L~~l~l~~~~~~~~~~~~~~~ 241 (258)
+|++||+++|.++ .+|+.|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566666666666 55555443
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00057 Score=49.18 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=49.6
Q ss_pred CceEEEccCCcccCCCChhhccCCCccEEEeeCCeec-ccCCcccc-CCCcccEEEccCce-eecCCCcccccccchhhh
Q 035481 172 TLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ-GRIPNQLC-QLRKLGIMDLSHNR-LNGPIPSCLGNVSSWREV 248 (258)
Q Consensus 172 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~-~~~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l 248 (258)
.++.+|-+++.+..+..+-+..+++++.|.+.+|.-. +.-.+.+. -.++|+.|+|++|. |++..-.++.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4566777777666555556666677777777777432 21111111 23677777777765 665556677777777777
Q ss_pred hhcc
Q 035481 249 IDDY 252 (258)
Q Consensus 249 ~l~~ 252 (258)
++.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.06 E-value=0.0027 Score=28.33 Aligned_cols=18 Identities=39% Similarity=0.536 Sum_probs=10.3
Q ss_pred cceEEecCcCccccccCcc
Q 035481 4 ELITLDLSRNNFSGELSRP 22 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~ 22 (258)
+|++|++++|+++ .+|..
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 3556666666665 55544
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.66 E-value=0.0087 Score=27.86 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=16.6
Q ss_pred CCcceEEecCcCccccccCccccc
Q 035481 2 MKELITLDLSRNNFSGELSRPIFS 25 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~ 25 (258)
+++|++|++++|+++ .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467777888888777 67776654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.66 E-value=0.0087 Score=27.86 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=16.6
Q ss_pred CCcceEEecCcCccccccCccccc
Q 035481 2 MKELITLDLSRNNFSGELSRPIFS 25 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~ 25 (258)
+++|++|++++|+++ .+|.++|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 467777888888777 67776654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.66 E-value=0.006 Score=25.25 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=6.4
Q ss_pred CcceEEecCcCccc
Q 035481 3 KELITLDLSRNNFS 16 (258)
Q Consensus 3 ~~L~~L~l~~~~l~ 16 (258)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35566666666554
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.27 E-value=2.7e-05 Score=64.65 Aligned_cols=162 Identities=22% Similarity=0.166 Sum_probs=84.0
Q ss_pred CCCCCccceEEecCccccCCcCc----cccCC-CCccEEEccccccee-----ecCCCCCcCCCcEEEeeccccccc---
Q 035481 96 IGNFSGLWVLLMSENYLQGSIPV----QLGNL-VCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL--- 162 (258)
Q Consensus 96 l~~l~~L~~l~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~--- 162 (258)
+...+.|+.+++.++.+.+.... .+... ..++.|++..|.+.. ....+.....++.+++..|.+...
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhH
Confidence 34455566666665555422111 11111 234445554454432 222333455666666666655311
Q ss_pred -Cccch----hcCCCceEEEccCCcccCC----CChhhccCCC-ccEEEeeCCeecccC----CccccCC-CcccEEEcc
Q 035481 163 -IPIAL----LRSSTLLTLDLRDNKLFGR----IPHQINELSN-LHFLLLRGNYLQGRI----PNQLCQL-RKLGIMDLS 227 (258)
Q Consensus 163 -~~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~l~~~~----~~~l~~~-~~L~~l~l~ 227 (258)
....+ ....++++|.+..|.++.. ....+...+. +..|++..|.+.+.. ...+..+ +.+++++++
T Consensus 191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 11222 2356677777777766421 1123334444 556777777665432 2333334 566788888
Q ss_pred CceeecC----CCcccccccchhhhhhcccccCC
Q 035481 228 HNRLNGP----IPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 228 ~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+|.++.. ++..+..+++++++.+++|+++.
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 8877633 23455667778888888877753
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.92 E-value=0.0024 Score=47.26 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=38.9
Q ss_pred CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224 (258)
Q Consensus 145 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l 224 (258)
.....+.++++.|... .+...++.+..+..++++.+.+. ..|..+.....++.+++..|... ..|.++...+.++.+
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3444445555554443 12233334444455555555442 44444444444444444444443 344455555555555
Q ss_pred EccCceee
Q 035481 225 DLSHNRLN 232 (258)
Q Consensus 225 ~l~~~~~~ 232 (258)
++.++++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 55555443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.42 E-value=0.016 Score=26.32 Aligned_cols=12 Identities=42% Similarity=0.733 Sum_probs=4.0
Q ss_pred cccEEEccCcee
Q 035481 220 KLGIMDLSHNRL 231 (258)
Q Consensus 220 ~L~~l~l~~~~~ 231 (258)
+|++|+|++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444433
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.45 E-value=0.003 Score=52.79 Aligned_cols=156 Identities=22% Similarity=0.231 Sum_probs=100.4
Q ss_pred cceEEecCccccCCc----CccccCCCCccEEEccccccee-----ecCCCCCc-CCCcEEEeeccccccc----Cccch
Q 035481 102 LWVLLMSENYLQGSI----PVQLGNLVCLEFIDISENSLSG-----SMVSLSNL-SSVEHIYLHNNAINGL----IPIAL 167 (258)
Q Consensus 102 L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~l~l~~~~~~~~----~~~~~ 167 (258)
+..+.+.+|.+.... ...+...+.|+.++++.|.+.+ ....+... ..++++.+..|.++.. ....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 667777777665332 2345667889999999988764 12223332 5667777777877644 34455
Q ss_pred hcCCCceEEEccCCcccC----CCChhh----ccCCCccEEEeeCCeecccC----CccccCCCc-ccEEEccCceeecC
Q 035481 168 LRSSTLLTLDLRDNKLFG----RIPHQI----NELSNLHFLLLRGNYLQGRI----PNQLCQLRK-LGIMDLSHNRLNGP 234 (258)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~----~~~~~~----~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~-L~~l~l~~~~~~~~ 234 (258)
.....++.++++.|.+.. ..+.++ ....++++|++..|.++... ...+...+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 557788889999888731 122222 34677889999988876322 223333344 66788888887633
Q ss_pred ----CCcccccc-cchhhhhhcccccCC
Q 035481 235 ----IPSCLGNV-SSWREVIDDYSLLSG 257 (258)
Q Consensus 235 ----~~~~~~~l-~~L~~l~l~~~~~~~ 257 (258)
...++..+ ..++.+++.+|.|+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 23456666 678999999998875
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.20 E-value=0.97 Score=20.96 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=11.5
Q ss_pred CcceEEecCcCccccccCc
Q 035481 3 KELITLDLSRNNFSGELSR 21 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~ 21 (258)
++|+.|++++|+++ .+|.
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45667777777766 5553
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.15 E-value=1.3 Score=20.54 Aligned_cols=12 Identities=58% Similarity=0.822 Sum_probs=5.7
Q ss_pred CccEEECCCCcc
Q 035481 29 SLETLDLSNNNF 40 (258)
Q Consensus 29 ~L~~L~l~~~~~ 40 (258)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444455555444
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.14 E-value=0.042 Score=40.91 Aligned_cols=91 Identities=16% Similarity=0.054 Sum_probs=48.2
Q ss_pred cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCC
Q 035481 19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGN 98 (258)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~ 98 (258)
+|..-...+.+.+.||++.+..... ...|+-+..+..|+++.+++. ..+..+.....++.++...|.+. ..|..+..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 4433344456666677766655322 233444455556666666554 34444455555555555555444 45555556
Q ss_pred CCccceEEecCccc
Q 035481 99 FSGLWVLLMSENYL 112 (258)
Q Consensus 99 l~~L~~l~l~~~~~ 112 (258)
.++++++....+.+
T Consensus 110 ~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEF 123 (326)
T ss_pred cCCcchhhhccCcc
Confidence 66666666555543
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.79 E-value=0.8 Score=38.68 Aligned_cols=63 Identities=22% Similarity=0.237 Sum_probs=30.3
Q ss_pred cCCCceEEEccCCcccCC--CChhhccCCCccEEEeeCC--eecccCC-ccccCCCcccEEEccCceee
Q 035481 169 RSSTLLTLDLRDNKLFGR--IPHQINELSNLHFLLLRGN--YLQGRIP-NQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 169 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~l~~~~~-~~l~~~~~L~~l~l~~~~~~ 232 (258)
+.+.+..+.+++|++... ........|+|+.|+|++| .+..... ..+ ....|++|-+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCccc
Confidence 345666666666666321 1122234466666666666 2221111 111 2234666666666653
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.65 E-value=0.49 Score=22.33 Aligned_cols=12 Identities=42% Similarity=0.321 Sum_probs=5.1
Q ss_pred CccEEEeeCCee
Q 035481 196 NLHFLLLRGNYL 207 (258)
Q Consensus 196 ~L~~L~l~~~~l 207 (258)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 344444444444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.20 E-value=1.5 Score=37.08 Aligned_cols=65 Identities=28% Similarity=0.330 Sum_probs=40.6
Q ss_pred CCCcceEEecCcCccccccC--cccccCCCCccEEECCCCccccccCcccc--CCcccceeecccccccc
Q 035481 1 EMKELITLDLSRNNFSGELS--RPIFSGCPSLETLDLSNNNFYGQLFPNYM--NLTHLRSLLLDNNNFSG 66 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 66 (258)
+.|.+..+++++|++. .+. ...-...|+|..|+|++|...-.....+. ....|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4577888888888865 332 12334578899999998822111112222 23568888888888753
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.05 E-value=1.2 Score=20.39 Aligned_cols=13 Identities=31% Similarity=0.233 Sum_probs=10.3
Q ss_pred CCcccEEEccCce
Q 035481 218 LRKLGIMDLSHNR 230 (258)
Q Consensus 218 ~~~L~~l~l~~~~ 230 (258)
|++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5678888888885
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.84 E-value=25 Score=29.69 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=8.6
Q ss_pred CcccEEEccCceee
Q 035481 219 RKLGIMDLSHNRLN 232 (258)
Q Consensus 219 ~~L~~l~l~~~~~~ 232 (258)
..+..+++++|...
T Consensus 440 qtl~kldisgn~mg 453 (553)
T KOG4242|consen 440 QTLAKLDISGNGMG 453 (553)
T ss_pred cccccccccCCCcc
Confidence 45666666666654
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=48.06 E-value=13 Score=38.41 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=29.2
Q ss_pred ecCcCccccccCcccccCCCCccEEECCCCccc
Q 035481 9 DLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY 41 (258)
Q Consensus 9 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 41 (258)
||++|+|+ .++...|..+++|+.|+|++|++.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 68899999 899999999999999999998764
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=32.70 E-value=20 Score=16.43 Aligned_cols=11 Identities=45% Similarity=0.476 Sum_probs=5.9
Q ss_pred ceEEecCcCcc
Q 035481 5 LITLDLSRNNF 15 (258)
Q Consensus 5 L~~L~l~~~~l 15 (258)
||+|.|.+..+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 55565555443
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.91 E-value=53 Score=34.46 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=22.4
Q ss_pred EeecccccccCccchhcCCCceEEEccCCcc
Q 035481 153 YLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183 (258)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 183 (258)
+|++|.++.+....|..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 3567777766667777777788888887766
No 93
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=22.07 E-value=44 Score=15.35 Aligned_cols=12 Identities=67% Similarity=1.138 Sum_probs=5.0
Q ss_pred cCCCCccEEECC
Q 035481 25 SGCPSLETLDLS 36 (258)
Q Consensus 25 ~~~~~L~~L~l~ 36 (258)
.++.+++.|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 334444444443
Done!