Query 035481
Match_columns 258
No_of_seqs 152 out of 2555
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 04:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.4E-34 4.9E-39 252.1 20.4 255 2-257 393-718 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-34 4.9E-39 227.0 17.5 251 3-257 50-306 (313)
3 3v47_A TOLL-like receptor 5B a 100.0 4.5E-34 1.5E-38 235.5 19.6 256 2-257 53-409 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 2.2E-33 7.5E-38 232.7 20.6 252 4-256 33-333 (477)
5 2id5_A Lingo-1, leucine rich r 100.0 1.8E-33 6.1E-38 233.2 18.7 231 2-233 79-334 (477)
6 3rgz_A Protein brassinosteroid 100.0 2.2E-33 7.6E-38 244.6 19.2 254 4-257 369-694 (768)
7 3v47_A TOLL-like receptor 5B a 100.0 2.4E-33 8.3E-38 231.1 18.4 255 3-258 30-386 (455)
8 3o6n_A APL1; leucine-rich repe 100.0 1.3E-31 4.5E-36 216.6 19.9 250 3-257 45-332 (390)
9 3t6q_A CD180 antigen; protein- 100.0 1.5E-31 5.2E-36 227.8 20.6 251 3-256 278-536 (606)
10 1xku_A Decorin; proteoglycan, 100.0 2.2E-31 7.4E-36 210.7 20.1 246 3-255 52-305 (330)
11 1xku_A Decorin; proteoglycan, 100.0 3.2E-31 1.1E-35 209.7 19.9 244 4-258 32-278 (330)
12 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-32 1.3E-36 213.2 14.0 228 28-257 50-282 (313)
13 3t6q_A CD180 antigen; protein- 100.0 1.9E-31 6.4E-36 227.2 18.7 255 1-257 299-561 (606)
14 3o6n_A APL1; leucine-rich repe 100.0 3.4E-31 1.2E-35 214.1 18.1 229 27-258 44-310 (390)
15 2z66_A Variable lymphocyte rec 100.0 2E-31 6.8E-36 208.7 16.1 227 4-232 29-261 (306)
16 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-31 1.6E-35 209.0 17.7 245 4-256 55-307 (332)
17 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.7E-36 226.0 17.0 250 3-257 51-338 (597)
18 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-31 2.5E-35 223.5 20.1 108 2-110 55-163 (606)
19 3zyj_A Leucine-rich repeat-con 100.0 1.6E-30 5.6E-35 213.3 20.5 246 5-256 45-292 (440)
20 2z66_A Variable lymphocyte rec 100.0 6.2E-31 2.1E-35 206.0 16.8 247 6-257 10-262 (306)
21 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-31 1.9E-35 208.4 16.7 243 4-258 34-279 (332)
22 3zyi_A Leucine-rich repeat-con 100.0 2E-30 6.7E-35 213.5 20.5 246 5-256 56-303 (452)
23 2z80_A TOLL-like receptor 2, v 100.0 3.7E-31 1.3E-35 211.2 15.3 252 4-257 53-315 (353)
24 3oja_B Anopheles plasmodium-re 100.0 7.7E-31 2.6E-35 222.8 17.7 249 2-257 74-359 (597)
25 1ozn_A Reticulon 4 receptor; N 100.0 4E-30 1.4E-34 199.4 17.5 223 6-232 14-238 (285)
26 4fcg_A Uncharacterized protein 100.0 1.8E-30 6.1E-35 204.9 15.6 227 27-257 80-315 (328)
27 1ozn_A Reticulon 4 receptor; N 100.0 9.1E-30 3.1E-34 197.3 19.3 250 3-254 32-285 (285)
28 2z63_A TOLL-like receptor 4, v 100.0 3.2E-30 1.1E-34 218.1 18.2 108 2-110 51-159 (570)
29 4eco_A Uncharacterized protein 100.0 1.4E-30 4.7E-35 222.5 16.0 248 2-255 304-578 (636)
30 1ziw_A TOLL-like receptor 3; i 100.0 4.5E-30 1.5E-34 221.4 18.2 254 3-257 25-343 (680)
31 3zyj_A Leucine-rich repeat-con 100.0 1.1E-29 3.8E-34 208.4 19.6 228 3-232 64-292 (440)
32 3zyi_A Leucine-rich repeat-con 100.0 1.5E-29 5.2E-34 208.2 20.3 228 3-232 75-303 (452)
33 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-30 2E-34 225.2 18.7 111 147-257 266-376 (844)
34 4eco_A Uncharacterized protein 100.0 4.9E-30 1.7E-34 219.1 17.7 247 1-256 328-600 (636)
35 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-29 6.6E-34 217.5 20.7 255 2-257 328-598 (680)
36 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4.1E-34 202.1 17.9 241 1-256 86-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 1.6E-29 5.6E-34 201.2 18.5 242 1-258 64-326 (347)
38 4fcg_A Uncharacterized protein 100.0 1.1E-29 3.7E-34 200.5 16.8 226 2-232 80-314 (328)
39 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-30 1.7E-34 218.4 15.6 247 3-257 307-559 (606)
40 3j0a_A TOLL-like receptor 5; m 100.0 9.6E-30 3.3E-34 223.8 17.6 256 1-256 46-351 (844)
41 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-29 6E-34 211.4 16.2 247 3-256 21-412 (520)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.1E-29 2.4E-33 209.5 17.7 247 3-256 52-441 (562)
43 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4.2E-33 214.8 19.6 244 2-255 547-839 (876)
44 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-28 8.2E-33 208.9 20.4 108 4-112 53-160 (635)
45 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-29 8.8E-34 210.4 14.0 145 6-159 3-150 (520)
46 2z81_A CD282 antigen, TOLL-lik 100.0 9.1E-30 3.1E-34 214.5 11.0 134 3-137 26-161 (549)
47 4ecn_A Leucine-rich repeat pro 100.0 4.8E-29 1.6E-33 217.4 15.5 243 2-252 490-785 (876)
48 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-28 4.1E-33 208.1 17.1 247 2-257 30-417 (562)
49 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-29 1.1E-33 211.0 13.1 160 1-161 48-210 (549)
50 2z80_A TOLL-like receptor 2, v 100.0 8.7E-29 3E-33 197.5 14.4 253 2-258 30-292 (353)
51 3o53_A Protein LRIM1, AGAP0063 100.0 2.6E-29 9E-34 197.5 10.4 237 2-253 33-272 (317)
52 2z63_A TOLL-like receptor 4, v 100.0 8.2E-29 2.8E-33 209.5 13.8 247 2-257 281-532 (570)
53 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-27 6.4E-32 203.4 21.1 110 1-111 74-184 (635)
54 1wwl_A Monocyte differentiatio 100.0 4.3E-30 1.5E-34 201.6 4.0 245 3-258 43-311 (312)
55 1o6v_A Internalin A; bacterial 100.0 8.9E-28 3E-32 198.4 18.1 80 2-88 67-146 (466)
56 1o6v_A Internalin A; bacterial 100.0 1.3E-27 4.4E-32 197.4 18.6 104 146-257 242-345 (466)
57 3o53_A Protein LRIM1, AGAP0063 100.0 8.8E-29 3E-33 194.5 9.1 238 4-256 11-250 (317)
58 3oja_A Leucine-rich immune mol 100.0 5.8E-28 2E-32 200.1 12.9 235 2-251 33-270 (487)
59 2z62_A TOLL-like receptor 4, v 99.9 1.2E-26 4.1E-31 178.9 18.2 222 7-233 11-238 (276)
60 3bz5_A Internalin-J, INLJ; leu 99.9 3.3E-26 1.1E-30 188.0 20.7 207 2-233 41-247 (457)
61 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-26 8.3E-31 188.8 18.8 188 1-211 62-249 (457)
62 2o6q_A Variable lymphocyte rec 99.9 4.2E-25 1.4E-29 169.7 20.7 199 5-207 18-217 (270)
63 2z62_A TOLL-like receptor 4, v 99.9 8.5E-26 2.9E-30 174.2 16.6 205 52-257 28-238 (276)
64 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.4E-31 191.5 11.0 217 26-256 32-250 (487)
65 2o6q_A Variable lymphocyte rec 99.9 4.8E-25 1.6E-29 169.4 18.5 203 28-233 16-219 (270)
66 1p9a_G Platelet glycoprotein I 99.9 2.1E-25 7E-30 173.0 16.0 206 20-232 2-208 (290)
67 3rfs_A Internalin B, repeat mo 99.9 5.5E-26 1.9E-30 174.8 12.1 210 25-245 38-248 (272)
68 1wwl_A Monocyte differentiatio 99.9 1.5E-26 5E-31 181.5 8.0 223 5-233 65-310 (312)
69 3rfs_A Internalin B, repeat mo 99.9 7.1E-25 2.4E-29 168.6 14.5 208 2-221 40-248 (272)
70 1p9a_G Platelet glycoprotein I 99.9 4.6E-24 1.6E-28 165.4 18.7 200 1-208 8-208 (290)
71 3g06_A SSPH2 (leucine-rich rep 99.9 6.2E-24 2.1E-28 179.7 20.3 118 124-257 181-298 (622)
72 1z7x_W Ribonuclease inhibitor; 99.9 4.1E-28 1.4E-32 200.3 -6.2 254 4-257 86-412 (461)
73 3goz_A Leucine-rich repeat-con 99.9 8E-27 2.7E-31 186.6 0.4 248 8-256 3-297 (362)
74 1z7x_W Ribonuclease inhibitor; 99.9 6.3E-28 2.2E-32 199.1 -6.6 253 3-255 56-353 (461)
75 1jl5_A Outer protein YOPM; leu 99.9 2.7E-23 9.1E-28 170.6 20.6 230 3-257 131-410 (454)
76 2xwt_C Thyrotropin receptor; s 99.9 2.1E-24 7.3E-29 162.9 12.6 196 53-253 32-236 (239)
77 2xwt_C Thyrotropin receptor; s 99.9 5.2E-24 1.8E-28 160.8 14.3 205 15-230 23-237 (239)
78 4glp_A Monocyte differentiatio 99.9 6.3E-25 2.1E-29 172.1 8.7 225 28-257 64-308 (310)
79 2ast_B S-phase kinase-associat 99.9 7.8E-26 2.7E-30 179.2 2.7 245 5-258 49-308 (336)
80 2ca6_A RAN GTPase-activating p 99.9 6.1E-27 2.1E-31 189.0 -5.0 234 24-257 28-317 (386)
81 1h6u_A Internalin H; cell adhe 99.9 4E-23 1.4E-27 161.6 15.9 190 3-208 41-230 (308)
82 1jl5_A Outer protein YOPM; leu 99.9 1.9E-22 6.6E-27 165.5 20.7 228 3-257 111-371 (454)
83 1h6u_A Internalin H; cell adhe 99.9 4.7E-23 1.6E-27 161.1 15.4 194 25-233 38-231 (308)
84 3m19_A Variable lymphocyte rec 99.9 7E-23 2.4E-27 155.7 15.4 180 52-234 14-194 (251)
85 2ca6_A RAN GTPase-activating p 99.9 7.1E-26 2.4E-30 182.8 -2.6 234 2-235 31-319 (386)
86 4glp_A Monocyte differentiatio 99.9 8E-24 2.7E-28 165.8 8.1 225 4-233 65-308 (310)
87 3m19_A Variable lymphocyte rec 99.9 5.8E-22 2E-26 150.6 18.0 176 4-183 15-191 (251)
88 3g06_A SSPH2 (leucine-rich rep 99.9 8.2E-22 2.8E-26 166.8 20.1 218 4-257 41-275 (622)
89 2ast_B S-phase kinase-associat 99.9 1E-24 3.6E-29 172.8 1.4 234 3-241 70-315 (336)
90 3goz_A Leucine-rich repeat-con 99.9 5.2E-24 1.8E-28 170.3 3.9 231 3-234 22-299 (362)
91 4ay9_X Follicle-stimulating ho 99.9 1.1E-21 3.8E-26 156.1 15.6 239 6-253 12-256 (350)
92 4ay9_X Follicle-stimulating ho 99.9 5.9E-21 2E-25 151.9 15.7 222 3-229 30-256 (350)
93 2o6s_A Variable lymphocyte rec 99.9 1.4E-20 4.8E-25 138.9 14.5 161 77-244 29-190 (208)
94 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.4E-25 139.1 12.9 180 7-220 11-190 (208)
95 1h6t_A Internalin B; cell adhe 99.8 1.9E-20 6.3E-25 145.2 11.8 188 31-233 27-214 (291)
96 1h6t_A Internalin B; cell adhe 99.8 5.3E-20 1.8E-24 142.7 12.8 186 9-210 30-215 (291)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 5.9E-20 2E-24 136.6 12.2 153 78-233 13-167 (220)
98 3cvr_A Invasion plasmid antige 99.8 1E-19 3.5E-24 152.3 15.0 186 4-217 60-252 (571)
99 2v9t_B SLIT homolog 2 protein 99.8 8.1E-20 2.8E-24 135.9 12.6 151 79-232 14-165 (220)
100 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.8E-24 151.5 15.3 189 29-244 60-255 (571)
101 4ezg_A Putative uncharacterize 99.8 3.2E-20 1.1E-24 135.8 9.6 152 99-257 43-195 (197)
102 1m9s_A Internalin B; cell inva 99.8 4.9E-20 1.7E-24 155.8 11.7 173 25-210 40-212 (605)
103 3sb4_A Hypothetical leucine ri 99.8 1.5E-20 5.1E-25 148.4 8.0 102 146-249 225-327 (329)
104 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.2E-24 152.8 14.2 203 30-247 23-225 (605)
105 2xot_A Amphoterin-induced prot 99.8 1.5E-19 5.1E-24 144.4 12.4 175 6-184 21-202 (361)
106 2xot_A Amphoterin-induced prot 99.8 1.7E-19 5.7E-24 144.1 11.9 175 55-232 21-202 (361)
107 2v9t_B SLIT homolog 2 protein 99.8 9.9E-19 3.4E-23 130.0 15.0 152 55-209 14-166 (220)
108 3e6j_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 131.9 12.8 154 76-233 19-173 (229)
109 4ezg_A Putative uncharacterize 99.8 4E-19 1.4E-23 130.0 9.7 153 25-184 41-194 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 9E-23 127.7 14.2 150 6-159 14-165 (220)
111 3ogk_B Coronatine-insensitive 99.8 3.3E-21 1.1E-25 163.7 -1.8 91 167-257 432-527 (592)
112 1xeu_A Internalin C; cellular 99.8 5E-19 1.7E-23 135.1 9.7 170 27-210 18-187 (263)
113 3ogk_B Coronatine-insensitive 99.8 1.3E-20 4.3E-25 160.1 0.2 253 2-256 163-476 (592)
114 4fdw_A Leucine rich hypothetic 99.8 2.5E-17 8.4E-22 132.9 19.1 238 4-253 136-380 (401)
115 3e6j_A Variable lymphocyte rec 99.8 9E-18 3.1E-22 125.6 15.0 154 53-210 20-174 (229)
116 1xeu_A Internalin C; cellular 99.8 1.8E-18 6.1E-23 132.1 9.5 168 4-186 20-187 (263)
117 3sb4_A Hypothetical leucine ri 99.8 3.4E-19 1.2E-23 140.6 5.6 110 146-257 201-311 (329)
118 4fdw_A Leucine rich hypothetic 99.8 4.1E-17 1.4E-21 131.6 17.8 239 4-256 114-358 (401)
119 1w8a_A SLIT protein; signaling 99.7 5.5E-18 1.9E-22 123.3 9.8 129 103-234 11-141 (192)
120 2p1m_B Transport inhibitor res 99.7 1.5E-20 5.2E-25 159.7 -5.3 253 2-256 155-519 (594)
121 2ell_A Acidic leucine-rich nuc 99.7 1E-17 3.5E-22 119.3 9.1 132 100-232 24-160 (168)
122 2ell_A Acidic leucine-rich nuc 99.7 2.8E-17 9.6E-22 117.0 10.5 132 123-257 23-161 (168)
123 1dce_A Protein (RAB geranylger 99.7 1.7E-20 6E-25 157.5 -8.4 203 25-249 346-566 (567)
124 1dce_A Protein (RAB geranylger 99.7 1.7E-20 5.7E-25 157.7 -8.8 192 49-257 346-547 (567)
125 2p1m_B Transport inhibitor res 99.7 4.6E-20 1.6E-24 156.7 -7.9 87 25-111 102-195 (594)
126 2o6r_A Variable lymphocyte rec 99.7 1E-16 3.4E-21 115.2 10.3 129 102-233 9-138 (177)
127 2wfh_A SLIT homolog 2 protein 99.7 1.4E-16 4.7E-21 115.9 10.2 127 103-232 13-139 (193)
128 2je0_A Acidic leucine-rich nuc 99.7 2.9E-17 1E-21 114.6 5.6 126 124-251 17-148 (149)
129 1w8a_A SLIT protein; signaling 99.7 4.8E-16 1.6E-20 113.0 12.1 128 6-137 11-139 (192)
130 4b8c_D Glucose-repressible alc 99.7 1E-17 3.6E-22 144.7 2.6 141 69-212 217-358 (727)
131 2je0_A Acidic leucine-rich nuc 99.7 1.4E-16 4.8E-21 111.1 7.7 128 100-228 17-149 (149)
132 2wfh_A SLIT homolog 2 protein 99.7 1.1E-15 3.6E-20 111.2 11.7 126 79-208 13-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.4E-21 114.5 6.1 133 96-232 15-153 (176)
134 4b8c_D Glucose-repressible alc 99.6 1.1E-16 3.6E-21 138.5 5.3 118 119-239 219-336 (727)
135 2o6r_A Variable lymphocyte rec 99.6 8.8E-15 3E-19 104.9 13.7 129 5-137 9-137 (177)
136 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-15 6.2E-20 108.4 8.7 130 74-207 17-152 (176)
137 4fs7_A Uncharacterized protein 99.6 7.6E-14 2.6E-18 112.7 17.1 244 1-252 69-375 (394)
138 1ds9_A Outer arm dynein; leuci 99.6 2.4E-17 8.4E-22 120.5 -5.7 110 95-208 43-153 (198)
139 4fs7_A Uncharacterized protein 99.5 1.6E-13 5.5E-18 110.8 15.4 220 19-248 153-393 (394)
140 3g39_A Variable lymphocyte rec 99.5 1.2E-14 4E-19 103.5 7.6 106 126-233 11-116 (170)
141 4gt6_A Cell surface protein; l 99.5 4E-13 1.4E-17 108.4 16.8 78 4-84 65-145 (394)
142 3g39_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 100.2 9.0 106 101-209 10-116 (170)
143 2r9u_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 100.1 9.3 104 127-232 15-118 (174)
144 2r9u_A Variable lymphocyte rec 99.5 4.2E-14 1.4E-18 101.0 8.0 106 149-257 14-119 (174)
145 1ds9_A Outer arm dynein; leuci 99.5 1.3E-16 4.4E-21 116.7 -6.8 132 119-256 43-185 (198)
146 4gt6_A Cell surface protein; l 99.4 1.5E-11 5E-16 99.3 17.8 108 143-254 261-368 (394)
147 3un9_A NLR family member X1; l 99.4 2.6E-15 8.8E-20 120.0 -5.6 165 75-239 71-259 (372)
148 4h09_A Hypothetical leucine ri 99.4 1.3E-10 4.5E-15 93.2 19.4 240 3-251 46-341 (379)
149 3un9_A NLR family member X1; l 99.3 1.1E-14 3.9E-19 116.3 -5.5 181 28-208 72-283 (372)
150 2ifg_A High affinity nerve gro 99.3 3E-12 1E-16 101.6 6.9 103 128-232 12-116 (347)
151 2ifg_A High affinity nerve gro 99.2 3.1E-11 1.1E-15 95.7 8.1 103 103-208 11-116 (347)
152 4h09_A Hypothetical leucine ri 99.2 1.7E-09 5.8E-14 86.7 17.8 222 23-252 41-319 (379)
153 2ra8_A Uncharacterized protein 99.2 1.3E-11 4.4E-16 97.9 3.6 63 194-256 251-320 (362)
154 2ra8_A Uncharacterized protein 99.0 1.9E-10 6.6E-15 91.2 3.9 178 49-230 136-341 (362)
155 3e4g_A ATP synthase subunit S, 98.8 2.9E-10 1E-14 80.0 -0.6 86 145-230 59-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.8 2.3E-10 7.9E-15 82.3 -2.1 115 118-232 30-164 (185)
157 3e4g_A ATP synthase subunit S, 98.7 3.8E-09 1.3E-13 74.3 2.2 85 124-208 61-153 (176)
158 1io0_A Tropomodulin; LRR prote 98.7 1.9E-09 6.4E-14 77.5 0.4 112 97-208 33-164 (185)
159 3rw6_A Nuclear RNA export fact 98.5 1.3E-08 4.5E-13 76.9 -0.8 80 168-249 167-257 (267)
160 3rw6_A Nuclear RNA export fact 98.3 4.5E-07 1.5E-11 68.5 3.6 81 25-106 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 5.6E-06 1.9E-10 59.3 -0.5 112 120-231 37-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 2.4E-05 8.4E-10 56.0 0.4 110 97-206 38-168 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00036 1.2E-08 46.6 3.4 57 174-232 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0015 5.2E-08 43.5 5.8 55 7-64 12-67 (130)
165 2lz0_A Uncharacterized protein 94.6 0.12 4.1E-06 32.4 6.0 50 12-63 5-54 (100)
166 2lz0_A Uncharacterized protein 87.9 0.67 2.3E-05 28.9 3.9 47 158-205 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-34 Score=252.06 Aligned_cols=255 Identities=34% Similarity=0.502 Sum_probs=221.4
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.+++.+|. .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 46788888888888755554 45778899999999998887788888888999999999998887788888888999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++++|.+....|..+..+++|+.|++.+|.+.+..|.++..+++|+.|++++|.+.. .+..+..+++|+.+++++|.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 999999887888888899999999999999988889899999999999999999874 5667888899999999998776
Q ss_pred ccCccc----------------------------------------------------------------------hhcC
Q 035481 161 GLIPIA----------------------------------------------------------------------LLRS 170 (258)
Q Consensus 161 ~~~~~~----------------------------------------------------------------------~~~~ 170 (258)
+..|.. +..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 443322 2335
Q ss_pred CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhh
Q 035481 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVID 250 (258)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l 250 (258)
+.|+.|++++|.++..+|..+..+++|+.|++++|.+++.+|..+.++++|+.|||++|.+++.+|..+..+++|+.|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 67889999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q 035481 251 DYSLLSG 257 (258)
Q Consensus 251 ~~~~~~~ 257 (258)
++|+++|
T Consensus 712 s~N~l~g 718 (768)
T 3rgz_A 712 SNNNLSG 718 (768)
T ss_dssp CSSEEEE
T ss_pred cCCcccc
Confidence 9999876
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-34 Score=227.03 Aligned_cols=251 Identities=28% Similarity=0.392 Sum_probs=225.6
Q ss_pred CcceEEecCcCcccc--ccCcccccCCCCccEEECCC-CccccccCccccCCcccceeecccccccccCCcccCCCCCcc
Q 035481 3 KELITLDLSRNNFSG--ELSRPIFSGCPSLETLDLSN-NNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLE 79 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 79 (258)
.+++.|+++++.+.+ .+|. .+.++++|++|++++ |.+.+..+..|.++++|++|++++|.++...+..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999986 5665 468899999999995 888878888999999999999999999877888899999999
Q ss_pred EEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCC-CccEEEccccccee-ecCCCCCcCCCcEEEeecc
Q 035481 80 VLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV-CLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNN 157 (258)
Q Consensus 80 ~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~ 157 (258)
+|++++|.+....|..+..+++|++|++.+|.+.+..|..+..++ .|+.|++++|.+.. .+..+.... |+.+++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999988888999999999999999999888898999888 99999999999985 555666665 999999999
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 237 (258)
.+++..+..+..+++|+.|++++|.++...+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988888899999999999999999755544 77889999999999999989999999999999999999999988887
Q ss_pred ccccccchhhhhhcccc-cCC
Q 035481 238 CLGNVSSWREVIDDYSL-LSG 257 (258)
Q Consensus 238 ~~~~l~~L~~l~l~~~~-~~~ 257 (258)
. ..+++|+.+++++|+ +.|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEES
T ss_pred C-ccccccChHHhcCCCCccC
Confidence 6 899999999999998 443
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.5e-34 Score=235.49 Aligned_cols=256 Identities=21% Similarity=0.219 Sum_probs=153.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCC--cccCCCCCcc
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMT--DGLLSSTLLE 79 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 79 (258)
+++|++|++++|.+.+.++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+ ..+..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 45566666666655444555555666666666666666655555556666666666666666543222 2255566666
Q ss_pred EEEccCccccCCCCCc-CCCCCccceEEecCccccCCcCccccC----------------------------------CC
Q 035481 80 VLNVSNNKLSGDIPHW-IGNFSGLWVLLMSENYLQGSIPVQLGN----------------------------------LV 124 (258)
Q Consensus 80 ~l~l~~~~~~~~~~~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~----------------------------------~~ 124 (258)
+|++++|.+....+.. +..+++|+++++.+|.+.+..+..+.. ++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 6666666665444443 556666666666666655443332221 13
Q ss_pred CccEEEcccccc---------------------------------------------------------------eee-c
Q 035481 125 CLEFIDISENSL---------------------------------------------------------------SGS-M 140 (258)
Q Consensus 125 ~L~~L~l~~~~~---------------------------------------------------------------~~~-~ 140 (258)
+|+.|++++|.+ ... +
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 344444444432 221 2
Q ss_pred CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481 141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220 (258)
Q Consensus 141 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 220 (258)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 23445566666666666666665666666677777777777766555666677777777777777777666667777777
Q ss_pred ccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 7777777777765444456777777777777777764
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=232.68 Aligned_cols=252 Identities=22% Similarity=0.203 Sum_probs=136.3
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4555555555555 344444555555555555555555444455555555555555555554333334444555555555
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCc------------------------cccCCCCccEEEcccccceee
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV------------------------QLGNLVCLEFIDISENSLSGS 139 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~------------------------~~~~~~~L~~L~l~~~~~~~~ 139 (258)
++|.+....+..+..+++|+.|++.+|.+.+..+. .+..+++|+.|+++.|.+...
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 55544433334444444444444444444333333 344444444444444444332
Q ss_pred cC-CCCCcCC------------------------CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccC
Q 035481 140 MV-SLSNLSS------------------------VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINEL 194 (258)
Q Consensus 140 ~~-~~~~~~~------------------------L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 194 (258)
.. .+..+++ |++|++++|.++......+..+++|+.|++++|.+....+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 21 2333333 3444444444443333455566666666666666665555566666
Q ss_pred CCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 195 SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 195 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
++|+.|++++|++.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77777777777776666667777777777777777776444445667777777777777664
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=233.22 Aligned_cols=231 Identities=22% Similarity=0.239 Sum_probs=154.2
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|
T Consensus 79 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 344444444444444 4444444445555555555554444444444445555555555555444444445555555555
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccc------------------------ccce
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE------------------------NSLS 137 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~------------------------~~~~ 137 (258)
++++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++ |.+.
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 5555555433333445556666666666655544444555556555555554 4444
Q ss_pred eec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc
Q 035481 138 GSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC 216 (258)
Q Consensus 138 ~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 216 (258)
..+ ..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..|.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcC
Confidence 333 2356788999999999999988888899999999999999999888888999999999999999999977777889
Q ss_pred CCCcccEEEccCceeec
Q 035481 217 QLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 217 ~~~~L~~l~l~~~~~~~ 233 (258)
.+++|++|++++|.+..
T Consensus 318 ~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 318 SVGNLETLILDSNPLAC 334 (477)
T ss_dssp CGGGCCEEECCSSCEEC
T ss_pred CCcccCEEEccCCCccC
Confidence 99999999999999973
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-33 Score=244.57 Aligned_cols=254 Identities=33% Similarity=0.465 Sum_probs=207.7
Q ss_pred cceEEecCcCccccccCccccc-CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 4 ELITLDLSRNNFSGELSRPIFS-GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+|++|++++|.+++.++..... .+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.++
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 4555555555554433333211 156677777777777767777788888888888888888777777888888888898
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeecccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
+++|.+....|..+..+++|+.+++.+|.+.+..|..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 88888887788888888999999999999888888888889999999999998874 56677888999999999999988
Q ss_pred cCccchhcCCCceEEEccCCcccCCCChh---------------------------------------------------
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQ--------------------------------------------------- 190 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------------------------- 190 (258)
..+..+..+++|+.|++++|.+...+|..
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 88888999999999999999876544432
Q ss_pred -------------------hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481 191 -------------------INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD 251 (258)
Q Consensus 191 -------------------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~ 251 (258)
+..+++|+.|++++|++++.+|..+.+++.|+.|+|++|.+++.+|..++.+++|+.|+++
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 2234678899999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC
Q 035481 252 YSLLSG 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
+|+++|
T Consensus 689 ~N~l~g 694 (768)
T 3rgz_A 689 SNKLDG 694 (768)
T ss_dssp SSCCEE
T ss_pred CCcccC
Confidence 999986
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-33 Score=231.13 Aligned_cols=255 Identities=22% Similarity=0.239 Sum_probs=209.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccc-cccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY-GQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
++|++|++++|.++ .++...|.++++|++|++++|.+. .+.+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 57999999999998 666677899999999999999886 3446778999999999999999987778889999999999
Q ss_pred EccCccccCCCC--CcCCCCCccceEEecCccccCCcCcc-ccCCCCccEEEcccccceeecC-CCC-------------
Q 035481 82 NVSNNKLSGDIP--HWIGNFSGLWVLLMSENYLQGSIPVQ-LGNLVCLEFIDISENSLSGSMV-SLS------------- 144 (258)
Q Consensus 82 ~l~~~~~~~~~~--~~l~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~------------- 144 (258)
++++|.+....+ ..+..+++|++|++.+|.+.+..+.. +..+++|+.|++++|.+..... .+.
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 999999875333 34888999999999999998776765 7889999999999998765321 111
Q ss_pred ---------------------CcC--------------------------------------------------------
Q 035481 145 ---------------------NLS-------------------------------------------------------- 147 (258)
Q Consensus 145 ---------------------~~~-------------------------------------------------------- 147 (258)
..+
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 113
Q ss_pred -------CCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481 148 -------SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220 (258)
Q Consensus 148 -------~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 220 (258)
+++++++++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 3444444455554445666778889999999999888777788888999999999999988777888889999
Q ss_pred ccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481 221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 258 (258)
|++|++++|.+++..|..+..+++|+.|++++|+++++
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 99999999999877788899999999999999998763
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-31 Score=216.56 Aligned_cols=250 Identities=19% Similarity=0.164 Sum_probs=134.8
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+++++++++++.++ .+|..+|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45555666555555 55555555556666666666555544444555555566666665555544444455555566666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC--------------------
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-------------------- 142 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------- 142 (258)
+++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+......
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 655555533333345555555555555555544444455555555555555544321100
Q ss_pred ------------------CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481 143 ------------------LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204 (258)
Q Consensus 143 ------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (258)
....++|+.+++++|.+++. ..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 00112344444444444432 3445556666666666666555555666666666666666
Q ss_pred CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|++.+ .+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 282 n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 282 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 66653 2333445566666666666665 455555566666666666666554
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-31 Score=227.76 Aligned_cols=251 Identities=22% Similarity=0.203 Sum_probs=109.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccC-CcccCCCCCccEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKM-TDGLLSSTLLEVL 81 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~l 81 (258)
++|++|++++|.++ .+|.. +.++++|++|++++|.+....+..+..+++|++|++++|.+.... ...+..+++|+++
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 34444444444444 34333 233444444444444444333334444444444444444333111 2223444444444
Q ss_pred EccCccccCCC--CCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec--CCCCCcCCCcEEEeecc
Q 035481 82 NVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM--VSLSNLSSVEHIYLHNN 157 (258)
Q Consensus 82 ~l~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~l~l~~~ 157 (258)
++++|.+.... +..+..+++|+++++.+|.+.+..+..+..+++|+.|++++|.+.... ..+..+++|+++++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 44444443222 333444455555555544444343444444445555555544443321 11334444445555444
Q ss_pred cccccCccchhcCCCceEEEccCCcccC---CCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFG---RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~ 234 (258)
.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 4444444444444444444444444432 1112344444444444444444444444444444444444444444444
Q ss_pred CCcccccccchhhhhhcccccC
Q 035481 235 IPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 235 ~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
.|..+..++.| .|++++|+++
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCC
T ss_pred ChhHhCccccc-EEECcCCccc
Confidence 44444444444 4444444443
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.2e-31 Score=210.66 Aligned_cols=246 Identities=20% Similarity=0.224 Sum_probs=136.7
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+..+ .++|++++
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~--~~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhh--cccccEEE
Confidence 34566666666665 4555555666666666666666655555556666666666666665552 22222 14566666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccC--CcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
+++|.+....+..+..+++|+.+++.+|.+.. ..+..+..+++|+.|++++|.+...+..+. ++|+++++++|.++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 66655554444445556666666666655532 334445555666666666665554443332 55666666666655
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 555555556666666666666655444445555666666666666555 4455555566666666666666533233332
Q ss_pred c------ccchhhhhhccccc
Q 035481 241 N------VSSWREVIDDYSLL 255 (258)
Q Consensus 241 ~------l~~L~~l~l~~~~~ 255 (258)
. .++++.+++.+|++
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSS
T ss_pred CcccccccccccceEeecCcc
Confidence 2 24555555555555
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.2e-31 Score=209.72 Aligned_cols=244 Identities=22% Similarity=0.245 Sum_probs=214.7
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+++.++++++.++ .+|... .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6889999999998 788655 478999999999999887778999999999999999998777888999999999999
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++|.+. .++..+. ++|++|++.+|.+.+..+..+..+++|+.|+++.|.+.. .+..+..+++|+++++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999988 4555443 799999999999987777778999999999999998863 3456778899999999999988
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
..... + .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus 185 ~l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TIPQG-L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SCCSS-C--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cCCcc-c--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 65432 2 279999999999998777889999999999999999999887888999999999999999998 7899999
Q ss_pred cccchhhhhhcccccCCC
Q 035481 241 NVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 241 ~l~~L~~l~l~~~~~~~~ 258 (258)
.+++|+.|++++|+|+++
T Consensus 261 ~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TCSSCCEEECCSSCCCCC
T ss_pred cCCCcCEEECCCCcCCcc
Confidence 999999999999999864
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3.9e-32 Score=213.19 Aligned_cols=228 Identities=25% Similarity=0.323 Sum_probs=209.2
Q ss_pred CCccEEECCCCcccc--ccCccccCCcccceeeccc-ccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 28 PSLETLDLSNNNFYG--QLFPNYMNLTHLRSLLLDN-NNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 28 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
.+++.|+++++.+.+ ..+..|.++++|++|++++ +.+....+..+..+++|++|++++|.+....|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999987 7788999999999999995 8888778888999999999999999998788888999999999
Q ss_pred EEecCccccCCcCccccCCCCccEEEcccccce-eecCCCCCcC-CCcEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLS-GSMVSLSNLS-SVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182 (258)
Q Consensus 105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 182 (258)
|++.+|.+.+..|..+..+++|+.|++++|.+. ..+..+..++ .|+++++++|.+++..+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999888999999999999999999998 5667787777 999999999999988888888887 9999999999
Q ss_pred ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 9888889999999999999999999865554 7888999999999999998999999999999999999999975
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.9e-31 Score=227.21 Aligned_cols=255 Identities=23% Similarity=0.176 Sum_probs=224.1
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCcccc-ccCccccCCcccceeecccccccccC--CcccCCCCC
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRSLLLDNNNFSGKM--TDGLLSSTL 77 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~ 77 (258)
++++|++|++++|.++ .++...+.++++|++|++++|.+.. .....+..+++|++|++++|.++... +..+..+++
T Consensus 299 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp SCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred ccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 3689999999999998 6666677899999999999998863 34455889999999999999987554 667889999
Q ss_pred ccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCc-cccCCCCccEEEcccccceee-cCCCCCcCCCcEEEee
Q 035481 78 LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPV-QLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLH 155 (258)
Q Consensus 78 L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~ 155 (258)
|+++++++|.+....+..+..+++|+.+++.+|.+.+..+. .+..+++|+.|++++|.+... +..+..+++|++++++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 99999999998877788899999999999999998766544 488899999999999998764 4567789999999999
Q ss_pred ccccccc---CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 156 NNAINGL---IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 156 ~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
+|.+++. .+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+..|..+.+++.| +|++++|.++
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 9998752 23568889999999999999988888899999999999999999998889999999999 9999999999
Q ss_pred cCCCcccccccchhhhhhcccccCC
Q 035481 233 GPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 233 ~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+..|..+..+++|+.|++++|++++
T Consensus 537 ~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 537 IILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred ccCHhhcccCCCCCEEeCCCCCccc
Confidence 7777789999999999999999864
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.4e-31 Score=214.14 Aligned_cols=229 Identities=16% Similarity=0.112 Sum_probs=187.7
Q ss_pred CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481 27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL 106 (258)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~ 106 (258)
+++++.++++++.+..+.+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 58899999999999877766688899999999999999877777899999999999999999977778889999999999
Q ss_pred ecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCccchhc----------------
Q 035481 107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLR---------------- 169 (258)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~---------------- 169 (258)
+.+|.+....+..+..+++|+.|++++|.+.... ..+..+++|++|++++|.++......+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 9999998555555788999999999999998764 45778899999999999887542222211
Q ss_pred ---------------------CCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481 170 ---------------------SSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228 (258)
Q Consensus 170 ---------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 228 (258)
.++|+.|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 12455555555555422 4677888999999999998877788888999999999999
Q ss_pred ceeecCCCcccccccchhhhhhcccccCCC
Q 035481 229 NRLNGPIPSCLGNVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 229 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 258 (258)
|.++ .++..+..+++|+.|++++|+++++
T Consensus 282 n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 282 NRLV-ALNLYGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp SCCC-EEECSSSCCTTCCEEECCSSCCCCC
T ss_pred CcCc-ccCcccCCCCCCCEEECCCCcceec
Confidence 9987 4676777889999999999988753
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2e-31 Score=208.75 Aligned_cols=227 Identities=21% Similarity=0.236 Sum_probs=107.1
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCcccccc--CccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+|++|++++++++ .++..+|.++++|++|++++|.+.... +..+..+++|++|++++|.+. ..+..+..+++|+++
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4455555555554 444444445555555555555443221 233334445555555555444 222334444555555
Q ss_pred EccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcEEEeeccc
Q 035481 82 NVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNA 158 (258)
Q Consensus 82 ~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~ 158 (258)
++++|.+....+ ..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 555554442222 234444555555555554444444444444555555555554432 33344444555555555555
Q ss_pred ccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCC-cccEEEccCceee
Q 035481 159 INGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR-KLGIMDLSHNRLN 232 (258)
Q Consensus 159 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~l~l~~~~~~ 232 (258)
+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5444444444455555555555554443333444445555555555555444444444442 4555555555544
No 16
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.6e-31 Score=208.97 Aligned_cols=245 Identities=24% Similarity=0.269 Sum_probs=121.8
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
++++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+..+. ++|+++++
T Consensus 55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEEC
Confidence 4555555555555 4444445555555555555555554445555555555555555555542 222221 45555555
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccC--CcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQG--SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
++|.+....+..+..+++|+.+++.+|.+.. ..+..+..+ +|+.|++++|.+...+..+. ++|++|++++|.+++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCc
Confidence 5555553333345555555555555555431 223333333 44444444444433322221 345555555555554
Q ss_pred cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 241 (258)
..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+++..+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 44444555555555555555555444445555555555555555554 34444555555555555555555332233332
Q ss_pred ------ccchhhhhhcccccC
Q 035481 242 ------VSSWREVIDDYSLLS 256 (258)
Q Consensus 242 ------l~~L~~l~l~~~~~~ 256 (258)
.++|+.|++.+|+++
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSC
T ss_pred cccccccccccceEeecCccc
Confidence 234555555555543
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-31 Score=226.01 Aligned_cols=250 Identities=19% Similarity=0.177 Sum_probs=138.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++++.++++++.+. .+|..+|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44555666666555 55555555566666666666655555445555566666666666655544444555556666666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-------------------
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL------------------- 143 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------- 143 (258)
+++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+...+...
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 6666555333333455566666666666555555555555555555555555543321000
Q ss_pred -------------------CCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481 144 -------------------SNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204 (258)
Q Consensus 144 -------------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (258)
...++|+.|++++|.+++ +..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 001234444444444443 23455566666666666666555556666666666666666
Q ss_pred CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++
T Consensus 288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 288 NRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp SCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 66653 3344445566666666666665 455555666666666666666554
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=7.4e-31 Score=223.55 Aligned_cols=108 Identities=24% Similarity=0.287 Sum_probs=60.0
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|
T Consensus 55 l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 456666666666665 4544555666666666666666655555556666666666666665554443445555555555
Q ss_pred EccCccccC-CCCCcCCCCCccceEEecCc
Q 035481 82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSEN 110 (258)
Q Consensus 82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~ 110 (258)
++++|.+.. ..|..+.++++|++|++.+|
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 555555442 23444555555555554444
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=213.27 Aligned_cols=246 Identities=20% Similarity=0.163 Sum_probs=204.5
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
.+.++.++.+++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456777888887 788765 3678899999999888777888889999999999998887777788888999999999
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc-cceeecC-CCCCcCCCcEEEeeccccccc
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN-SLSGSMV-SLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~~~ 162 (258)
+|.++...+..+..+++|++|++.+|.+....+..+..+++|+.|+++++ .+...+. .+..+++|++|++++|.++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99888666667888999999999999888666667888899999999884 4444443 567888999999999988754
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV 242 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l 242 (258)
. .+..+++|++|++++|.++...+..+..+++|+.|++++|++.+..+..|..+++|++|+|++|.+++..+..|..+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 46778899999999999887778888899999999999999988888888899999999999999986555678889
Q ss_pred cchhhhhhcccccC
Q 035481 243 SSWREVIDDYSLLS 256 (258)
Q Consensus 243 ~~L~~l~l~~~~~~ 256 (258)
++|+.|++++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999998874
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=6.2e-31 Score=205.97 Aligned_cols=247 Identities=21% Similarity=0.179 Sum_probs=214.6
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccC--CcccCCCCCccEEEc
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKM--TDGLLSSTLLEVLNV 83 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~l~l 83 (258)
+.++.++++++ .+|..+ .+++++|++++|.+..+....|.++++|++|++++|.++... +..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46888888898 788765 468999999999998776667899999999999999887332 445667899999999
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~ 161 (258)
++|.+. ..+..+..+++|++|++.+|.+.+..+ ..+..+++|+.|++++|.+.... ..+..+++|++|++++|.+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999988 456668889999999999999885544 57888999999999999997654 457788999999999999876
Q ss_pred -cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 162 -LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 162 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5677888999999999999999877788899999999999999999977777889999999999999999988888899
Q ss_pred ccc-chhhhhhcccccCC
Q 035481 241 NVS-SWREVIDDYSLLSG 257 (258)
Q Consensus 241 ~l~-~L~~l~l~~~~~~~ 257 (258)
.++ +|+.|++++|++++
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 985 99999999999875
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.6e-31 Score=208.43 Aligned_cols=243 Identities=23% Similarity=0.265 Sum_probs=212.6
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+++.++++++.++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6899999999998 888765 478999999999998877788999999999999999998777888999999999999
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEEeeccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++|.+. .++..+. ++|++|++.+|.+....+..+..+++|+.|++++|.+.. .+..+... +|+++++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999988 5555443 899999999999987766778999999999999999864 33445555 8999999999998
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
.... .+ .++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus 186 ~l~~-~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 GIPK-DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SCCS-SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred ccCc-cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 6433 22 279999999999998777788999999999999999999877788999999999999999998 7898999
Q ss_pred cccchhhhhhcccccCCC
Q 035481 241 NVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 241 ~l~~L~~l~l~~~~~~~~ 258 (258)
.+++|+.|++++|+|+++
T Consensus 262 ~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp GCTTCCEEECCSSCCCBC
T ss_pred cCccCCEEECCCCCCCcc
Confidence 999999999999999763
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2e-30 Score=213.48 Aligned_cols=246 Identities=19% Similarity=0.143 Sum_probs=203.9
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
.+.++.++.+++ .+|..+ .+++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777888887 777665 3688899999999888878888889999999999998887777788888999999999
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc-cceeecC-CCCCcCCCcEEEeeccccccc
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN-SLSGSMV-SLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~L~~l~l~~~~~~~~ 162 (258)
+|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|+++.+ .+...+. .+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 99888666667888999999999999888666667888899999999884 4444443 467888999999999988755
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccc
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNV 242 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l 242 (258)
..+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|.+++..+..+..+
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 346778899999999999887778888899999999999999888888888889999999999999986555678889
Q ss_pred cchhhhhhcccccC
Q 035481 243 SSWREVIDDYSLLS 256 (258)
Q Consensus 243 ~~L~~l~l~~~~~~ 256 (258)
++|+.|++++|++.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 99999999998874
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=211.22 Aligned_cols=252 Identities=21% Similarity=0.225 Sum_probs=136.4
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|+++++
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 4555555555554 444444455555555555555555444444555555555555555554333333445555555555
Q ss_pred cCccccCCCC-CcCCCCCccceEEecCcc-ccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccc
Q 035481 84 SNNKLSGDIP-HWIGNFSGLWVLLMSENY-LQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 84 ~~~~~~~~~~-~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~ 160 (258)
++|.+..... ..+..+++|+.+++.+|. +....+..+..+++|+.|++++|.+... +..+..+++|+++++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5555542222 244455555555555542 3323334445555555555555555443 334445555555555555544
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhh---ccCCCccEEEeeCCeecc----cCCccccCCCcccEEEccCceeec
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQI---NELSNLHFLLLRGNYLQG----RIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
......+..+++|+.|++++|.+....+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 3333333344555555555555543222211 123444555555544432 23456778899999999999998
Q ss_pred CCCcc-cccccchhhhhhcccccCC
Q 035481 234 PIPSC-LGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 234 ~~~~~-~~~l~~L~~l~l~~~~~~~ 257 (258)
.+|.. |..+++|+.|++++|++++
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 57765 5899999999999999875
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=7.7e-31 Score=222.75 Aligned_cols=249 Identities=18% Similarity=0.192 Sum_probs=205.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus 74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 678999999999998 6777778899999999999999988877888999999999999999986666667889999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccC----------------C---------------------C
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGN----------------L---------------------V 124 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~----------------~---------------------~ 124 (258)
++++|.+....+..+..+++|+.|++.+|.+.+.....+.. . +
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 99999998777778889999999999998876442222211 1 2
Q ss_pred CccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeC
Q 035481 125 CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRG 204 (258)
Q Consensus 125 ~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (258)
+|+.|++++|.+.. +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++. ++..+..+++|+.|++++
T Consensus 233 ~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 233 ELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 34445555555443 2456688999999999999998888899999999999999999874 466667789999999999
Q ss_pred CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 205 NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 205 ~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|.+. .+|..+..+++|+.|++++|.+++ ++ +..+++|+.|++++|++++
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 9998 567778889999999999999984 44 7789999999999999863
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4e-30 Score=199.38 Aligned_cols=223 Identities=22% Similarity=0.269 Sum_probs=183.4
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN 85 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 85 (258)
++++.+++.++ .+|... .+++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56788888887 677654 56888899999888877777788888899999998888876677788888899999988
Q ss_pred cc-ccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccC
Q 035481 86 NK-LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLI 163 (258)
Q Consensus 86 ~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~ 163 (258)
|. +....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++...
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 6655577788888999999988888877677788888899999988888776543 667888999999998888777
Q ss_pred ccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 164 PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 777888889999999999887777888888889999999999888666667888888999999988876
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-30 Score=204.88 Aligned_cols=227 Identities=20% Similarity=0.258 Sum_probs=182.2
Q ss_pred CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481 27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL 106 (258)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~ 106 (258)
.++++.|++++|.+. ..+..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467778888887776 34555666778888888888777 56666777788888888887777 6677777788888888
Q ss_pred ecCccccCCcCcccc---------CCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEE
Q 035481 107 MSENYLQGSIPVQLG---------NLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLD 177 (258)
Q Consensus 107 l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 177 (258)
+.+|...+..|..+. .+++|+.|++++|.+..++..+..+++|++|++++|.+++. +..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEE
Confidence 877766666665554 38889999998888887777788888999999999988854 44678888999999
Q ss_pred ccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+++|.+....|..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+.+|+.++.+++|+.+.+..+.+..
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99988888888888889999999999988888888888899999999999998888899999999999988888776643
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=9.1e-30 Score=197.35 Aligned_cols=250 Identities=20% Similarity=0.167 Sum_probs=207.6
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-ccccCCcccCCCCCccEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN-FSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l 81 (258)
++|++|+++++.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 57999999999998 7887788999999999999999988878889999999999999997 776667788899999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~ 160 (258)
++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 999999987777888899999999999999986666678889999999999999988765 4778999999999999999
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLG 240 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~ 240 (258)
+..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+....+. ..-...++.+..+.+.+....|+.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhC
Confidence 88888899999999999999999877767789999999999999988743211 11112355556667777777787665
Q ss_pred c--ccchhhhhhcccc
Q 035481 241 N--VSSWREVIDDYSL 254 (258)
Q Consensus 241 ~--l~~L~~l~l~~~~ 254 (258)
+ +..++..++.+|+
T Consensus 270 g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 270 GRDLKRLAANDLQGCA 285 (285)
T ss_dssp TCBGGGSCGGGSCCC-
T ss_pred CcChhhcCHHHhccCC
Confidence 4 5566666677663
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=218.13 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=58.7
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++......+..+++|++|
T Consensus 51 l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp CSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 456666666666665 4555556666666666666666655554555555555555555555543333334455555555
Q ss_pred EccCccccC-CCCCcCCCCCccceEEecCc
Q 035481 82 NVSNNKLSG-DIPHWIGNFSGLWVLLMSEN 110 (258)
Q Consensus 82 ~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~ 110 (258)
++++|.+.. ..|..+.++++|++|++.+|
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 555554442 23444444455554444443
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.4e-30 Score=222.48 Aligned_cols=248 Identities=21% Similarity=0.182 Sum_probs=144.3
Q ss_pred CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCC-cc
Q 035481 2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LE 79 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~ 79 (258)
+++|++|++++|+++ .+|. ..+.++++|++|++++|.+.+..+ .|..+++|++|++++|.++ ..+..+..+++ |+
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 367777777777777 6665 345777778888888777764444 6666777777777777766 45555666666 77
Q ss_pred EEEccCccccCCCCCcCCCCC--ccceEEecCccccCCcCcccc-------CCCCccEEEcccccceeecCCCC-CcCCC
Q 035481 80 VLNVSNNKLSGDIPHWIGNFS--GLWVLLMSENYLQGSIPVQLG-------NLVCLEFIDISENSLSGSMVSLS-NLSSV 149 (258)
Q Consensus 80 ~l~l~~~~~~~~~~~~l~~l~--~L~~l~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-~~~~L 149 (258)
+|++++|.+. .+|..+..+. +|+.+++.+|.+.+..|..+. .+++|+.|++++|.+..++..+. .+++|
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence 7777777766 5555554433 666666666666655555555 45566666666666554443322 34555
Q ss_pred cEEEeecccccccCccchhcCC-------CceEEEccCCcccCCCChhhc--cCCCccEEEeeCCeecccCCccccCCCc
Q 035481 150 EHIYLHNNAINGLIPIALLRSS-------TLLTLDLRDNKLFGRIPHQIN--ELSNLHFLLLRGNYLQGRIPNQLCQLRK 220 (258)
Q Consensus 150 ~~l~l~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 220 (258)
++|++++|.++......+.... +|+.|++++|.++ .+|..+. .+++|+.|++++|++.+ +|..+..+++
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~ 537 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST 537 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence 5555555555533322222221 5555555555554 3444443 55555555555555553 4555555555
Q ss_pred ccEEEc------cCceeecCCCcccccccchhhhhhccccc
Q 035481 221 LGIMDL------SHNRLNGPIPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 221 L~~l~l------~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 255 (258)
|++|++ ++|.+.+.+|..+..+++|+.|++++|++
T Consensus 538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 555555 23444445555555555555555555555
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.5e-30 Score=221.45 Aligned_cols=254 Identities=20% Similarity=0.185 Sum_probs=161.7
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+++++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++++
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46788888888887 67777778888888888888888777777777888888888888887755555677788888888
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC---CCCcCCCcEEEeecccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS---LSNLSSVEHIYLHNNAI 159 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~l~l~~~~~ 159 (258)
+++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...... ...+++|+++++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888877755556777788888888888877766666777777888888877776543321 12345666666666655
Q ss_pred cccCccc---------------------------------------------------hhcCC--CceEEEccCCcccCC
Q 035481 160 NGLIPIA---------------------------------------------------LLRSS--TLLTLDLRDNKLFGR 186 (258)
Q Consensus 160 ~~~~~~~---------------------------------------------------~~~~~--~L~~L~l~~~~~~~~ 186 (258)
++..+.. +..++ +|++|++++|.+...
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 4443333 22222 244555555544434
Q ss_pred CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec-----CCCc----ccccccchhhhhhcccccCC
Q 035481 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG-----PIPS----CLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~-----~~~~----~~~~l~~L~~l~l~~~~~~~ 257 (258)
.+..+..+++|++|++++|.+.+..+..+..+++|+.+++++|...+ .+|. .+..+++|+.|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 44444455555555555555544444455555555555555443221 1121 45566666677777776654
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=208.35 Aligned_cols=228 Identities=19% Similarity=0.176 Sum_probs=205.8
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++++.|++++|+++ .++...|.++++|++|++++|.+..+.+..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 46899999999998 77878889999999999999999888888999999999999999999877777889999999999
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCcc-ccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENY-LQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
+++|.+....+..+..+++|+.|++.++. +....+..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence 99999986667788999999999999854 44344457889999999999999998765 57788999999999999998
Q ss_pred cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88899999999999999999998888889999999999999999999877888899999999999999986
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.5e-29 Score=208.20 Aligned_cols=228 Identities=20% Similarity=0.171 Sum_probs=205.6
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
+++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 47999999999998 67777889999999999999999988888999999999999999999877777788999999999
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCc-cccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSEN-YLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
+++|.+....+..+..+++|+.|++.++ .+....+..+..+++|+.|++++|.+...+ .+..+++|++|++++|.+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcc
Confidence 9999998666678899999999999985 444344456888999999999999998764 57788999999999999998
Q ss_pred cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88899999999999999999998888889999999999999999999777788899999999999999986
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.8e-30 Score=225.17 Aligned_cols=111 Identities=22% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226 (258)
Q Consensus 147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 226 (258)
++++.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 45666666666666555666677777777777777776666677777788888888888777666777778888888888
Q ss_pred cCceeecCCCcccccccchhhhhhcccccCC
Q 035481 227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.+.+..+..|..+++|+.|++++|.+++
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 8888775555667788888888888888765
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.9e-30 Score=219.08 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=212.4
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcc-cceeecccccccccCCcccCCCC--C
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTH-LRSLLLDNNNFSGKMTDGLLSST--L 77 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~ 77 (258)
++++|++|++++|.++|.+| .|.++++|++|++++|.+. ..+..+..+++ |++|++++|.++ ..+..+.... +
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 47889999999999998888 5788999999999999998 56677888999 999999999998 5666666554 8
Q ss_pred ccEEEccCccccCCCCCcCC-------CCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCC-----
Q 035481 78 LEVLNVSNNKLSGDIPHWIG-------NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSN----- 145 (258)
Q Consensus 78 L~~l~l~~~~~~~~~~~~l~-------~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----- 145 (258)
|+++++++|.+....|..+. .+++|+.|++.+|.+....+..+..+++|+.|++++|.+..++.....
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 99999999999877777777 788999999999999854444566789999999999999876655443
Q ss_pred ---cCCCcEEEeecccccccCccchh--cCCCceEEEccCCcccCCCChhhccCCCccEEEee------CCeecccCCcc
Q 035481 146 ---LSSVEHIYLHNNAINGLIPIALL--RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR------GNYLQGRIPNQ 214 (258)
Q Consensus 146 ---~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~l~~~~~~~ 214 (258)
+++|+.|++++|.++. ++..+. .+++|+.|++++|.++. +|..+..+++|++|+++ +|.+.+.+|..
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~ 561 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred ccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence 2389999999999984 556665 89999999999999986 78889999999999994 57777888999
Q ss_pred ccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 215 LCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 215 l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+..+++|++|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 562 l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 562 ITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp GGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred HhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence 999999999999999994 7898765 89999999999875
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.9e-29 Score=217.49 Aligned_cols=255 Identities=23% Similarity=0.234 Sum_probs=127.5
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccc--cccCccccC--CcccceeecccccccccCCcccCCCCC
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFY--GQLFPNYMN--LTHLRSLLLDNNNFSGKMTDGLLSSTL 77 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~ 77 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+. ......|.. .+.|+.|++++|.++...+.++..+++
T Consensus 328 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 456666666666666 455555666666666666665421 111112221 134555555555555444455555666
Q ss_pred ccEEEccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee---ecCCCCCcCCCcEEE
Q 035481 78 LEVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SMVSLSNLSSVEHIY 153 (258)
Q Consensus 78 L~~l~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~l~ 153 (258)
|+.+++++|.+....+ ..+..+++|+.+++.+|.+.+..+..+..+++|+.|++.+|.+.. .+..+..+++|+.++
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 6666666665543222 345555556666665555544444444445555555555544431 233444555555555
Q ss_pred eecccccccCccchhcCCCceEEEccCCcccCCCC--------hhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481 154 LHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIP--------HQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225 (258)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 225 (258)
+++|.++...+..+..+++|++|++++|.++.... ..+.++++|++|++++|++.+..+..|..+++|++|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 55555554444445555555555555555432111 1234445555555555555433333455555555555
Q ss_pred ccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 226 LSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 226 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+++|.+++..+..|..+++|+.|++++|++++
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 55555553222334455555555555555543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=202.06 Aligned_cols=241 Identities=24% Similarity=0.306 Sum_probs=157.7
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++++|++|++++|.++ .++ .+.++++|++|++++|.+....+ +..+++|++|++++|..... ...+..+++|++
T Consensus 86 ~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~ 159 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKIT-DIS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNY 159 (347)
T ss_dssp TCTTCCEEECCSSCCC-CCG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCE
T ss_pred cCCcCCEEEccCCccc-Cch--HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcE
Confidence 3678888888888887 454 36778888888888888764432 66777777777777744322 233556666666
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcC--------------------ccccCCCCccEEEcccccceeec
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP--------------------VQLGNLVCLEFIDISENSLSGSM 140 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~ 140 (258)
++++++.+....+ +..+++|+.+++.+|.+.+..+ ..+..+++|+.|++++|.+...+
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc
Confidence 6666665542211 4455555555555555442211 11455566666777666665544
Q ss_pred CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481 141 VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220 (258)
Q Consensus 141 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 220 (258)
. +..+++|+++++++|.+++. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 238 ~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 4 56667777777777776643 3466777777777777777543 45677788888888888777666777777888
Q ss_pred ccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 221 LGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 221 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
|++|++++|.+++..| +..+++|+.|++++|+|+
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888774333 777888888888888775
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.6e-29 Score=201.24 Aligned_cols=242 Identities=23% Similarity=0.328 Sum_probs=184.5
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
.+++|++|++++|.++ .++. +.++++|++|++++|.+... +.+..+++|++|++++|.+....+ +..+++|++
T Consensus 64 ~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136 (347)
T ss_dssp GCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred hcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence 3689999999999998 5665 78999999999999998753 568899999999999999875432 788999999
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-------------------
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV------------------- 141 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------- 141 (258)
+++++|..... ...+..+++|+.+++.++.+.+..+ +..+++|+.|++++|.+.....
T Consensus 137 L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 137 LNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp EECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred EECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC
Confidence 99999966533 3458899999999999999874433 7788899999999888765432
Q ss_pred --CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCC
Q 035481 142 --SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR 219 (258)
Q Consensus 142 --~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 219 (258)
.+..+++|+++++++|.+++..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+.+. ..+..++
T Consensus 214 ~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~ 287 (347)
T 4fmz_A 214 ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS 287 (347)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred CchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC
Confidence 13344556666666666554332 56667777777777766532 4566777888888888877643 4567778
Q ss_pred cccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481 220 KLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 220 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 258 (258)
+|++|++++|.+++..+..+..+++|+.|++++|+++++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 888888888888766667788888888888888888763
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.1e-29 Score=200.46 Aligned_cols=226 Identities=19% Similarity=0.250 Sum_probs=205.2
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
.++++.|++++++++ .+|..++ ++++|++|++++|.+. ..+..+..+++|++|++++|.++ ..+..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 368999999999998 8888764 4999999999999998 66778899999999999999998 667789999999999
Q ss_pred EccCccccCCCCCcCCC---------CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEE
Q 035481 82 NVSNNKLSGDIPHWIGN---------FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHI 152 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~---------l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l 152 (258)
++++|......|..+.. +++|++|++.+|.++ .+|..+..+++|+.|++++|.+...+..+..+++|++|
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEE
Confidence 99998777677776654 999999999999998 77888999999999999999999888888899999999
Q ss_pred EeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 153 YLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++++|.+.+..+..+..+++|++|++++|.+....|..+..+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999998888889999999999999999998899999999999999999999999999999999999999999877664
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.1e-30 Score=218.39 Aligned_cols=247 Identities=19% Similarity=0.122 Sum_probs=188.8
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc--CCcccCCCCCccE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK--MTDGLLSSTLLEV 80 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~ 80 (258)
++|++|++++|.+. .+| . + .+++|++|++++|.... ...+..+++|++|++++|.++.. .+..+..+++|++
T Consensus 307 ~~L~~L~l~~n~l~-~lp-~-~-~l~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~ 380 (606)
T 3vq2_A 307 FKWQSLSIIRCQLK-QFP-T-L-DLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380 (606)
T ss_dssp CCCSEEEEESCCCS-SCC-C-C-CCSSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCE
T ss_pred ccCCEEEcccccCc-ccc-c-C-CCCccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccE
Confidence 45555555555553 454 2 2 45566666666553321 12455677777777777776543 2555667788888
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEccccccee-ecCCCCCcCCCcEEEeeccc
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNA 158 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~ 158 (258)
+++++|.+. ..+..+..+++|+.+++.+|.+.+..+ ..+..+++|+.|++++|.+.. .+..+..+++|+++++++|.
T Consensus 381 L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred eECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 888888776 355777888889999998888876665 577888899999999998876 44567788899999999998
Q ss_pred ccc-cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481 159 ING-LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237 (258)
Q Consensus 159 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 237 (258)
+++ ..+..+..+++|++|++++|.++...+..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ .+|.
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 876 46777888899999999999988777888888999999999999998877888889999999999999988 6787
Q ss_pred cccccc-chhhhhhcccccCC
Q 035481 238 CLGNVS-SWREVIDDYSLLSG 257 (258)
Q Consensus 238 ~~~~l~-~L~~l~l~~~~~~~ 257 (258)
.+..++ +|+.|++++|+++.
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCC
T ss_pred hHhhhcccCcEEEccCCCccc
Confidence 788887 59999999998864
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=9.6e-30 Score=223.78 Aligned_cols=256 Identities=20% Similarity=0.192 Sum_probs=156.4
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcc--cCCCCCc
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDG--LLSSTLL 78 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L 78 (258)
++++|++|++++|...+.++...|.++++|++|++++|.+....+..|.++++|++|++++|.+....+.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 46788899998886555777777888899999999999888777888888889999999988887544433 7788888
Q ss_pred cEEEccCccccCCCC-CcCCCCCccceEEecCccccCCcCccccCC--CCccEEEccccccee-ecCCCCCcC------C
Q 035481 79 EVLNVSNNKLSGDIP-HWIGNFSGLWVLLMSENYLQGSIPVQLGNL--VCLEFIDISENSLSG-SMVSLSNLS------S 148 (258)
Q Consensus 79 ~~l~l~~~~~~~~~~-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~~~------~ 148 (258)
++|++++|.+....+ ..+.++++|++|++.+|.+.+..+..+..+ ++|+.|+++.|.+.. .+..+..++ .
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 888888888775443 467788888888888887765555544433 455555555554433 112222222 2
Q ss_pred CcEEEeecccccccCccch------------------------------------hc--CCCceEEEccCCcccCCCChh
Q 035481 149 VEHIYLHNNAINGLIPIAL------------------------------------LR--SSTLLTLDLRDNKLFGRIPHQ 190 (258)
Q Consensus 149 L~~l~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~~~~~~~~ 190 (258)
|+.+++++|.++...+..+ .. .++++.|++++|.+....+..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 4555555443321111111 00 134555555555554444444
Q ss_pred hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 191 INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 191 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 351 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC
Confidence 555555555555555555444455555555555555555555444445555555555555555554
No 41
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=211.40 Aligned_cols=247 Identities=21% Similarity=0.192 Sum_probs=158.0
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|++++|.++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++. .+.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEe
Confidence 46888888888887 5666667888888888888888877767778888888888888888773 3333 678888888
Q ss_pred ccCccccC-CCCCcCCCCCccceEEecCccccCCcCccccCCCCc--cEEEcccccc--ee-ecCCCCC-----------
Q 035481 83 VSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL--EFIDISENSL--SG-SMVSLSN----------- 145 (258)
Q Consensus 83 l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~~~----------- 145 (258)
+++|.+.. ..|..++.+++|++|++.+|.+.+ ..+..+++| +.|++++|.+ .. .+..+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 88888774 356677778888888777776542 122233333 4444444333 10 0000000
Q ss_pred ------------------------------------------------------------------------cCCCcEEE
Q 035481 146 ------------------------------------------------------------------------LSSVEHIY 153 (258)
Q Consensus 146 ------------------------------------------------------------------------~~~L~~l~ 153 (258)
.++|++++
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 01344444
Q ss_pred eecccccccCccch-----------------------------------------------------hcCCCceEEEccC
Q 035481 154 LHNNAINGLIPIAL-----------------------------------------------------LRSSTLLTLDLRD 180 (258)
Q Consensus 154 l~~~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~ 180 (258)
+++|.+++..+..+ ..+++|++|++++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 44443332211111 4566777777777
Q ss_pred CcccCCCChhhccCCCccEEEeeCCeecc--cCCccccCCCcccEEEccCceeecCCCcc-cccccchhhhhhcccccC
Q 035481 181 NKLFGRIPHQINELSNLHFLLLRGNYLQG--RIPNQLCQLRKLGIMDLSHNRLNGPIPSC-LGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~l~l~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~ 256 (258)
|.++...+..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|+++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~ 412 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence 77766666677777777777777777764 33455677777777777777777545543 666777777777777664
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.1e-29 Score=209.49 Aligned_cols=247 Identities=23% Similarity=0.186 Sum_probs=150.5
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|++++|.++ .++...|.++++|++|++++|.+....+.+|.++++|++|++++|.++. .+.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEE
Confidence 46777777777776 5666666777777777777777776666777777777777777777763 3333 567777777
Q ss_pred ccCccccCC-CCCcCCCCCccceEEecCccccCCcCccccCCCCc--cEEEcccccc--eee-cCCCC------------
Q 035481 83 VSNNKLSGD-IPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCL--EFIDISENSL--SGS-MVSLS------------ 144 (258)
Q Consensus 83 l~~~~~~~~-~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~-~~~~~------------ 144 (258)
+++|.+... .|..+..+++|++|++.+|.+.+. .+..+++| +.|+++.|.+ ... +..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 777777642 345677777777777777766532 22222333 5555555443 110 00000
Q ss_pred --------------C-------------------------------------------------------cCCCcEEEee
Q 035481 145 --------------N-------------------------------------------------------LSSVEHIYLH 155 (258)
Q Consensus 145 --------------~-------------------------------------------------------~~~L~~l~l~ 155 (258)
. .++|++++++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 0 0144445555
Q ss_pred cccccccCccch-----------------------------------------------------hcCCCceEEEccCCc
Q 035481 156 NNAINGLIPIAL-----------------------------------------------------LRSSTLLTLDLRDNK 182 (258)
Q Consensus 156 ~~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~ 182 (258)
+|.+++..+..+ ..+++|++|++++|.
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 554442222111 455677777777777
Q ss_pred ccCCCChhhccCCCccEEEeeCCeecccC--CccccCCCcccEEEccCceeecCCCc-ccccccchhhhhhcccccC
Q 035481 183 LFGRIPHQINELSNLHFLLLRGNYLQGRI--PNQLCQLRKLGIMDLSHNRLNGPIPS-CLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~ 256 (258)
++...+..+..+++|++|++++|++.+.. |..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|+++
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 441 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence 76666666777777777777777776422 34566777777777777777653553 3666666666666666664
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-28 Score=214.79 Aligned_cols=244 Identities=18% Similarity=0.125 Sum_probs=134.6
Q ss_pred CCcceEEecCcCccccccCc-ccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCC-cc
Q 035481 2 MKELITLDLSRNNFSGELSR-PIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTL-LE 79 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~ 79 (258)
+++|++|++++|.++ .+|. ..+.++++|+.|++++|.+. ..+ .|..+++|+.|++++|.+. ..+..+..+++ |+
T Consensus 547 l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 547 GPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred cCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 457777777777777 6665 34577777888888877776 333 6777777777777777776 55556666666 77
Q ss_pred EEEccCccccCCCCCcCCCCCc--cceEEecCccccCCcCc----------------------------c-ccCCCCccE
Q 035481 80 VLNVSNNKLSGDIPHWIGNFSG--LWVLLMSENYLQGSIPV----------------------------Q-LGNLVCLEF 128 (258)
Q Consensus 80 ~l~l~~~~~~~~~~~~l~~l~~--L~~l~l~~~~~~~~~~~----------------------------~-~~~~~~L~~ 128 (258)
.|++++|.+. .+|..+..++. |+.|++.+|.+.+..|. . +..+++|+.
T Consensus 623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 7777777766 55555444432 66666666555443321 1 123344444
Q ss_pred EEcccccceeecCCCCC--------cCCCcEEEeecccccccCccchh--cCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481 129 IDISENSLSGSMVSLSN--------LSSVEHIYLHNNAINGLIPIALL--RSSTLLTLDLRDNKLFGRIPHQINELSNLH 198 (258)
Q Consensus 129 L~l~~~~~~~~~~~~~~--------~~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (258)
|++++|.+..++..+.. +++|+.|++++|.++ .++..+. .+++|+.|++++|.+.. +|..+..+++|+
T Consensus 702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~ 779 (876)
T 4ecn_A 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779 (876)
T ss_dssp EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC
T ss_pred EECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCC
Confidence 44444444433322221 124555555555544 2233333 45555555555555543 344444555555
Q ss_pred EEEeeC------CeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhccccc
Q 035481 199 FLLLRG------NYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 199 ~L~l~~------~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 255 (258)
.|++++ |.+.+.+|..+..+++|++|+|++|.+ +.+|..+. ++|+.|++++|++
T Consensus 780 ~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 555543 344444455555555555555555555 34554433 3555555555554
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.4e-28 Score=208.94 Aligned_cols=108 Identities=26% Similarity=0.274 Sum_probs=60.3
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
++++|+|++|+++ .++...|.++++|++|++++|.+..+.+.+|.++++|++|++++|+++...+.+|..+.+|++|++
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4566666666665 555555566666666666666665555555566666666666666555444444555555555555
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYL 112 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 112 (258)
++|.+....+..++.+++|++|++.+|.+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCcc
Confidence 55555533333444555555555554444
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=210.40 Aligned_cols=145 Identities=22% Similarity=0.273 Sum_probs=127.3
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccC
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSN 85 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 85 (258)
+++++++++++ .+|..++ +++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57999999999 7997764 8999999999999877778899999999999999999877788899999999999999
Q ss_pred ccccCCCCCcCCCCCccceEEecCccccC-CcCccccCCCCccEEEcccccceeecCCCCCcCCC--cEEEeecccc
Q 035481 86 NKLSGDIPHWIGNFSGLWVLLMSENYLQG-SIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSV--EHIYLHNNAI 159 (258)
Q Consensus 86 ~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~~ 159 (258)
|.+. .+|.. .+++|++|++.+|.+.+ ..|..++.+++|+.|++++|.+.. ..+..++.+ +++++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 9998 45554 79999999999999986 467889999999999999999865 345666777 9999999887
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=9.1e-30 Score=214.46 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=79.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|++++|+++ .++...|.++++|++|++++|.+....+.+|.++++|++|++++|.++...+..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35677777777766 45445556677777777777776666556666677777777777766655444566666677777
Q ss_pred ccCccccC-CCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccce
Q 035481 83 VSNNKLSG-DIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLS 137 (258)
Q Consensus 83 l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 137 (258)
+++|.+.. ..+..+..+++|++|++.+|...+..+ ..+..+++|+.|++++|.+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 76666653 233455566666666666555222222 34444555555555554443
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.8e-29 Score=217.40 Aligned_cols=243 Identities=21% Similarity=0.227 Sum_probs=153.3
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCc-ccc-ccCcccc-------CCcccceeecccccccccCCc--
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNN-FYG-QLFPNYM-------NLTHLRSLLLDNNNFSGKMTD-- 70 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~-- 70 (258)
+++|++|++++|.+.+.+| ..|.++++|+.|++++|. +++ ..|..+. .+++|++|++++|.++ ..+.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred CCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 6788888888888776676 445778888888888887 654 3444333 3448888888888877 5566
Q ss_pred ccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCC-ccEEEcccccceeecCCCCCcC--
Q 035481 71 GLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVC-LEFIDISENSLSGSMVSLSNLS-- 147 (258)
Q Consensus 71 ~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~-- 147 (258)
.+..+++|+.|++++|.+. .+| .+..+++|+.|++.+|.+. .+|..+..+++ |+.|++++|.+..++..+....
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 6777888888888888777 555 6777788888888887777 66666777777 7777777777765554443322
Q ss_pred CCcEEEeecccccc-----------------------------cCccchhcCCCceEEEccCCcccCCCChhh-cc----
Q 035481 148 SVEHIYLHNNAING-----------------------------LIPIALLRSSTLLTLDLRDNKLFGRIPHQI-NE---- 193 (258)
Q Consensus 148 ~L~~l~l~~~~~~~-----------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~---- 193 (258)
+|+.|++++|.+.+ .....+..+++|+.|++++|.+. .+|..+ ..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 25555555555433 22222334455555555555554 222222 11
Q ss_pred ---CCCccEEEeeCCeecccCCcccc--CCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481 194 ---LSNLHFLLLRGNYLQGRIPNQLC--QLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY 252 (258)
Q Consensus 194 ---~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 252 (258)
+++|+.|++++|++. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 125666666666555 4455554 55666666666666653 555566666666666654
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-28 Score=208.08 Aligned_cols=247 Identities=22% Similarity=0.252 Sum_probs=195.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
|...+++++++++++ .+|...+ +++++|++++|.+....+..|.++++|++|++++|.++...+.++..+++|++|
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 344578999999999 7887663 899999999999998877899999999999999999998778889999999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCC-cCccccCCCCccEEEcccccceeecCCCCCcCCC--cEEEeeccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS-IPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSV--EHIYLHNNA 158 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~l~l~~~~ 158 (258)
++++|.+. .+|.. .+++|++|++.+|.+.+. .|..+..+++|+.|++++|.+.. ..+..++.+ +++++++|.
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESS
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeeccc
Confidence 99999998 55555 799999999999999853 35789999999999999998865 345555566 999999987
Q ss_pred c--cccCccchhcC------------------------------------------------------------------
Q 035481 159 I--NGLIPIALLRS------------------------------------------------------------------ 170 (258)
Q Consensus 159 ~--~~~~~~~~~~~------------------------------------------------------------------ 170 (258)
+ ++..+..+..+
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 7 43333333221
Q ss_pred ---------------CCceEEEccCCcccCCCChhh--------------------------------------------
Q 035481 171 ---------------STLLTLDLRDNKLFGRIPHQI-------------------------------------------- 191 (258)
Q Consensus 171 ---------------~~L~~L~l~~~~~~~~~~~~~-------------------------------------------- 191 (258)
++|++|++++|.+...+|..+
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 266777777776654444332
Q ss_pred ---------ccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec--CCCcccccccchhhhhhcccccCC
Q 035481 192 ---------NELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG--PIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 192 ---------~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++
T Consensus 341 n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred CCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 566788888888888887778888888889999999988874 234567888899999999988875
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.3e-29 Score=211.05 Aligned_cols=160 Identities=20% Similarity=0.163 Sum_probs=121.0
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCcc
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLE 79 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~ 79 (258)
++++|++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|+
T Consensus 48 ~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 48 ACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred cCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 3678888888888887 56666778888888888888888766666688888888888888887643 345677888888
Q ss_pred EEEccCcc-ccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-CCcCCCcEEEeecc
Q 035481 80 VLNVSNNK-LSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHIYLHNN 157 (258)
Q Consensus 80 ~l~l~~~~-~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l~l~~~ 157 (258)
++++++|. +....+..+..+++|++|++.+|.+.+..+..+..+++|+.|+++.+.....+..+ ..+++|+++++++|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 88888887 34333456788888888888888888777788888888888888887765433322 24667777777777
Q ss_pred cccc
Q 035481 158 AING 161 (258)
Q Consensus 158 ~~~~ 161 (258)
.+++
T Consensus 207 ~l~~ 210 (549)
T 2z81_A 207 NLAR 210 (549)
T ss_dssp BCTT
T ss_pred cccc
Confidence 6543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.7e-29 Score=197.48 Aligned_cols=253 Identities=17% Similarity=0.162 Sum_probs=209.5
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
|+.....+.++++++ .+|..+ .++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 455556788889998 888765 3689999999999987777789999999999999999987777889999999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccc-cceeec-CCCCCcCCCcEEEeeccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISEN-SLSGSM-VSLSNLSSVEHIYLHNNA 158 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~l~l~~~~ 158 (258)
++++|.+....+..+..+++|++|++.+|.+..... ..+..+++|+.|++++| .+...+ ..+..+++|+++++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999985444458899999999999999985444 47888999999999998 466653 567889999999999999
Q ss_pred ccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCcccc---CCCcccEEEccCceeec--
Q 035481 159 INGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLC---QLRKLGIMDLSHNRLNG-- 233 (258)
Q Consensus 159 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~-- 233 (258)
+++..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+. ....++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9988888999999999999999998644444455689999999999999865544332 45678888888887763
Q ss_pred --CCCcccccccchhhhhhcccccCCC
Q 035481 234 --PIPSCLGNVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 234 --~~~~~~~~l~~L~~l~l~~~~~~~~ 258 (258)
.+|..+..+++|+.|++++|+++++
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 4677889999999999999999753
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.6e-29 Score=197.53 Aligned_cols=237 Identities=24% Similarity=0.282 Sum_probs=188.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+.+..+ +..+++|++|++++|.++... ..++|+++
T Consensus 33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 468899999999988 6776777889999999999998865433 788899999999998876332 34789999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCC-CCcCCCcEEEeecccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSL-SNLSSVEHIYLHNNAI 159 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~l~l~~~~~ 159 (258)
++++|.+....+. .+++|+.+++.+|.+.+..+..+..+++|+.|++++|.+.... ..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 9999888744332 3678999999999988766667888899999999999887753 333 3678899999999988
Q ss_pred cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee-cCCCcc
Q 035481 160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN-GPIPSC 238 (258)
Q Consensus 160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~ 238 (258)
+.... ...+++|++|++++|.++. .+..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+. +.++..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred ccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 76532 2347899999999999874 4445888899999999999888 46777888899999999999987 667788
Q ss_pred cccccchhhhhhccc
Q 035481 239 LGNVSSWREVIDDYS 253 (258)
Q Consensus 239 ~~~l~~L~~l~l~~~ 253 (258)
+..++.|+.+++.++
T Consensus 258 ~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 258 FSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhccccceEEECCCc
Confidence 889999999988744
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=209.49 Aligned_cols=247 Identities=18% Similarity=0.169 Sum_probs=203.0
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|+++++.+. .+|..+ ..+ +|+.|++++|.+..... ..+++|+.|++++|.+....+. ..+++|+++
T Consensus 281 l~~L~~L~l~~~~l~-~l~~~~-~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L 352 (570)
T 2z63_A 281 LTNVSSFSLVSVTIE-RVKDFS-YNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFL 352 (570)
T ss_dssp GTTCSEEEEESCEEC-SCCBCC-SCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEE
T ss_pred cCcccEEEecCccch-hhhhhh-ccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEE
Confidence 467888888888877 566554 445 88888888887763322 4667888888888876643332 567889999
Q ss_pred EccCccccCCC--CCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC--CCCCcCCCcEEEeecc
Q 035481 82 NVSNNKLSGDI--PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV--SLSNLSSVEHIYLHNN 157 (258)
Q Consensus 82 ~l~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~l~l~~~ 157 (258)
++++|.+.... +..+..+++|+.+++.+|.+.+..+ .+..+++|+.|++++|.+..... .+..+++|+++++++|
T Consensus 353 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred eCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 99998876332 4567788999999999998875443 48889999999999999877543 5778899999999999
Q ss_pred cccccCccchhcCCCceEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCC
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIP 236 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~ 236 (258)
.+.+..+..+..+++|++|++++|.+. ...|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++..+
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 998888888899999999999999986 4577888999999999999999998888999999999999999999997767
Q ss_pred cccccccchhhhhhcccccCC
Q 035481 237 SCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 237 ~~~~~l~~L~~l~l~~~~~~~ 257 (258)
..+..+++|+.|++++|++++
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhhcccCCcEEEecCCcccC
Confidence 789999999999999999876
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.9e-27 Score=203.45 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=83.8
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++++|++|++++|+++ .++.++|.++++|++|++++|++....+..|.++++|++|++++|+++...+..+..+++|++
T Consensus 74 ~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 3678888888888887 788888888888888888888887777677888888888888888887666666777888888
Q ss_pred EEccCccccC-CCCCcCCCCCccceEEecCcc
Q 035481 81 LNVSNNKLSG-DIPHWIGNFSGLWVLLMSENY 111 (258)
Q Consensus 81 l~l~~~~~~~-~~~~~l~~l~~L~~l~l~~~~ 111 (258)
|++++|.+.. ..+..+..+++|++|++.+|.
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred eccccCccccCCCchhhccchhhhhhcccCcc
Confidence 8888877653 234555666666666665543
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.3e-30 Score=201.59 Aligned_cols=245 Identities=21% Similarity=0.217 Sum_probs=196.7
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCcccccc-Ccccc-------CCcccceeecccccccccCCccc--
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQL-FPNYM-------NLTHLRSLLLDNNNFSGKMTDGL-- 72 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~-- 72 (258)
++|+.++++++.+ .+|..+... ++.|++++|.+.... +..+. ++++|++|++++|.++...+..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3466677777777 466655432 888899998885332 22222 58899999999999987677765
Q ss_pred CCCCCccEEEccCccccCCCCCcCCCC-----CccceEEecCccccCCcCccccCCCCccEEEcccccceee---cCCC-
Q 035481 73 LSSTLLEVLNVSNNKLSGDIPHWIGNF-----SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS---MVSL- 143 (258)
Q Consensus 73 ~~l~~L~~l~l~~~~~~~~~~~~l~~l-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~- 143 (258)
..+++|++|++++|.+... +..+..+ ++|++|++.+|.+.+..+..+..+++|+.|++++|.+.+. +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 7889999999999999855 6666665 8999999999999977778899999999999999986542 2233
Q ss_pred -CCcCCCcEEEeecccccc---cCccchhcCCCceEEEccCCcccCCCC-hhhccCCCccEEEeeCCeecccCCccccCC
Q 035481 144 -SNLSSVEHIYLHNNAING---LIPIALLRSSTLLTLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRIPNQLCQL 218 (258)
Q Consensus 144 -~~~~~L~~l~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 218 (258)
..+++|++|++++|.++. .....+..+++|++|++++|.+....+ ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 788999999999999873 233445678999999999999986654 45667899999999999998 6676665
Q ss_pred CcccEEEccCceeecCCCcccccccchhhhhhcccccCCC
Q 035481 219 RKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSGF 258 (258)
Q Consensus 219 ~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 258 (258)
++|++|++++|++++ +|. +..+++|+.|++++|++++.
T Consensus 274 ~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCCC
Confidence 899999999999985 466 99999999999999999873
No 55
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=8.9e-28 Score=198.39 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=42.4
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++. +.++++|++|++++|.+....+ +.++++|++|++++|.++... .+..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred hcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEE
Confidence 456666666666665 3433 4556666666666665543322 555555555555555554321 14444555555
Q ss_pred EccCccc
Q 035481 82 NVSNNKL 88 (258)
Q Consensus 82 ~l~~~~~ 88 (258)
++++|.+
T Consensus 140 ~l~~n~l 146 (466)
T 1o6v_A 140 ELSSNTI 146 (466)
T ss_dssp EEEEEEE
T ss_pred ECCCCcc
Confidence 5544443
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.3e-27 Score=197.41 Aligned_cols=104 Identities=25% Similarity=0.360 Sum_probs=49.0
Q ss_pred cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEE
Q 035481 146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMD 225 (258)
Q Consensus 146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~ 225 (258)
+++|+.+++++|.+++..+ +..+++|+.|++++|.+....+ +..+++|+.|++++|++.+..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 3444444444444332221 3344444444444444432211 4445555555555555543222 44555555555
Q ss_pred ccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 226 LSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 226 l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+++|.+++..| +..+++|+.|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD 345 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCC
Confidence 55555553322 4555566666666665554
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.8e-29 Score=194.53 Aligned_cols=238 Identities=18% Similarity=0.088 Sum_probs=200.1
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
.++..+++++.+. ..+...+..+++|++|++++|.+....+..|..+++|++|++++|.++...+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3566777788776 6677778888999999999999987777789999999999999999875443 788999999999
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeeccccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
++|.+... ...++|+.+++.+|.+.+..+. .+++|+.|++++|.+.... ..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99988732 2348999999999998855433 3678999999999998764 3677889999999999999877
Q ss_pred Cccch-hcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccccc
Q 035481 163 IPIAL-LRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGN 241 (258)
Q Consensus 163 ~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~ 241 (258)
.+..+ ..+++|++|++++|.++.. + ....+++|++|++++|.+.+. +..+..+++|++|++++|.++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 66655 4689999999999998644 2 233589999999999999854 556889999999999999998 68888999
Q ss_pred ccchhhhhhcccccC
Q 035481 242 VSSWREVIDDYSLLS 256 (258)
Q Consensus 242 l~~L~~l~l~~~~~~ 256 (258)
+++|+.|++++|+++
T Consensus 236 l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 236 SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECTTCCCB
T ss_pred CCCCCEEEccCCCcc
Confidence 999999999999986
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.8e-28 Score=200.07 Aligned_cols=235 Identities=25% Similarity=0.291 Sum_probs=196.0
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|++++|.++ .++...|.++++|++|++++|.+.+..+ |..+++|++|++++|.++... ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 468999999999998 6777778999999999999999875443 888999999999999887432 23789999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCC-CcCCCcEEEeecccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLS-NLSSVEHIYLHNNAI 159 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~L~~l~l~~~~~ 159 (258)
++++|.+....+. .+++|+.|++.+|.+.+..+..+..+++|+.|++++|.+... +..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999988754433 468899999999999987787888899999999999999874 44454 689999999999998
Q ss_pred cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee-cCCCcc
Q 035481 160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN-GPIPSC 238 (258)
Q Consensus 160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~-~~~~~~ 238 (258)
++..+ ...+++|+.|++++|.++. .+..+..+++|+.|++++|.+.+ +|..+..+++|+.+++++|.+. +.+|..
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 86633 3358999999999999975 44458889999999999999984 6777888999999999999987 566778
Q ss_pred cccccchhhhhhc
Q 035481 239 LGNVSSWREVIDD 251 (258)
Q Consensus 239 ~~~l~~L~~l~l~ 251 (258)
+..++.|+.+.+.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8899999988885
No 59
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.2e-26 Score=178.95 Aligned_cols=222 Identities=22% Similarity=0.178 Sum_probs=182.5
Q ss_pred EEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCc
Q 035481 7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86 (258)
Q Consensus 7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 86 (258)
..+..+.++. .+|..+ .+++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 3556666676 677654 357999999999998777778889999999999999988776777888999999999999
Q ss_pred cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccccccee--ecCCCCCcCCCcEEEeecccccccCc
Q 035481 87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG--SMVSLSNLSSVEHIYLHNNAINGLIP 164 (258)
Q Consensus 87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~ 164 (258)
.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9886667788899999999999999886666678889999999999998876 45677888999999999999887766
Q ss_pred cchhcCCCce----EEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 165 IALLRSSTLL----TLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 165 ~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
..+..+++++ .+++++|.+....+..+ ...+|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 6676666666 89999999875544444 34589999999999987766778889999999999999874
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3.3e-26 Score=188.04 Aligned_cols=207 Identities=22% Similarity=0.219 Sum_probs=149.9
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|++|+++++.++ .+| .+..+++|++|++++|.+.+. .+..+++|++|++++|.++.. .+..+++|+++
T Consensus 41 l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEE
T ss_pred cCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEE
Confidence 578999999999988 455 367889999999999988764 277888999999999988753 27788889999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAING 161 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 161 (258)
++++|.+.. .+ +..+++|+++++.+|.+++. .+..+++|+.|+++.|...... .+..+++|+++++++|.+++
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce
Confidence 999888874 33 67888899999888888753 2667777888888777432222 45566777777777777765
Q ss_pred cCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 162 LIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 162 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
.. +..+++|+.|++++|.++.. .+..+++|++|++++|++.+ +| +..+++|+.|++++|.+++
T Consensus 185 l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 185 LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 32 55666777777777776543 25566777777777777664 33 5566677777777776664
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.4e-26 Score=188.83 Aligned_cols=188 Identities=23% Similarity=0.203 Sum_probs=144.5
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++++|++|++++|+++ .++ +..+++|++|++++|.+.+. .+..+++|++|++++|.++.. + +..+++|++
T Consensus 62 ~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~ 131 (457)
T 3bz5_A 62 KLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTY 131 (457)
T ss_dssp GCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred ccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCE
Confidence 3688999999999998 454 67889999999999988764 277889999999999988753 2 778899999
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccc
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 160 (258)
+++++|.+... .+..+++|+.+++.+|...+.. .+..+++|+.|++++|.+...+ +..++.|+.+++++|.++
T Consensus 132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCS
T ss_pred EECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCC
Confidence 99999988743 2677888888888888544343 4667788888888888877654 667778888888888777
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI 211 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 211 (258)
+. .+..+++|+.|++++|.++. +| +..+++|+.|++++|.+.+..
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 54 35667788888888887764 34 667777888888887776543
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.2e-25 Score=169.74 Aligned_cols=199 Identities=24% Similarity=0.258 Sum_probs=112.7
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
.+++++++++++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 456666666666 566543 2456667777766665555566666667777776666664444445566666666666
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccC
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLI 163 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~ 163 (258)
+|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 6666644444555666666666666666555444555566666666666555544332 344555555555555554444
Q ss_pred ccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCee
Q 035481 164 PIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207 (258)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 207 (258)
+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 44444455555555555555433333444455555555555544
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=8.5e-26 Score=174.21 Aligned_cols=205 Identities=18% Similarity=0.156 Sum_probs=178.0
Q ss_pred cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481 52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI 131 (258)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 131 (258)
+.+++|++++|.++...+..+..+++|+++++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998777778889999999999999998666678899999999999999998777788999999999999
Q ss_pred ccccceeecC-CCCCcCCCcEEEeeccccccc-CccchhcCCCceEEEccCCcccCCCChhhccCCCcc----EEEeeCC
Q 035481 132 SENSLSGSMV-SLSNLSSVEHIYLHNNAINGL-IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH----FLLLRGN 205 (258)
Q Consensus 132 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 205 (258)
++|.+..... .+..+++|++|++++|.++.. .+..+..+++|++|++++|.++...+..+..+++++ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999987654 578899999999999999864 478899999999999999999877777777776776 8999999
Q ss_pred eecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99866665554 4589999999999986555668999999999999999875
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=191.47 Aligned_cols=217 Identities=19% Similarity=0.105 Sum_probs=185.5
Q ss_pred CCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceE
Q 035481 26 GCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVL 105 (258)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l 105 (258)
.+++|+.|++++|.+....+..|..+++|++|++++|.++...+ +..+++|++|++++|.+.... ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34589999999999998877889999999999999999875443 888999999999999887322 34899999
Q ss_pred EecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccccccCccchh-cCCCceEEEccCCcc
Q 035481 106 LMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGLIPIALL-RSSTLLTLDLRDNKL 183 (258)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 183 (258)
++.+|.+.+..+. .+++|+.|++++|.+... +..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999865443 468899999999999875 44677899999999999999887776665 789999999999998
Q ss_pred cCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccC
Q 035481 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+.. + ....+++|+.|++++|.+.+. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 744 2 234589999999999999864 455889999999999999998 58888999999999999999986
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.8e-25 Score=169.42 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=173.6
Q ss_pred CCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEe
Q 035481 28 PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLM 107 (258)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l 107 (258)
.+.+.++++++.++.+ +..+. +.+++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4678999999988743 33333 57999999999998777778889999999999999998665666788999999999
Q ss_pred cCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481 108 SENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186 (258)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 186 (258)
.+|.+.+..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 9999986666678889999999999999987654 467889999999999999877777788899999999999999877
Q ss_pred CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 77778899999999999999987767778889999999999999873
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.1e-25 Score=172.96 Aligned_cols=206 Identities=27% Similarity=0.243 Sum_probs=169.7
Q ss_pred CcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCC
Q 035481 20 SRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNF 99 (258)
Q Consensus 20 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l 99 (258)
|...+.++++++.++++++.++.+. ..+. +.+++|++++|.++...+..+..+++|++|++++|.+....+ . ..+
T Consensus 2 p~C~~~~l~~l~~l~~~~~~l~~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l 76 (290)
T 1p9a_G 2 PICEVSKVASHLEVNCDKRNLTALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTL 76 (290)
T ss_dssp CSSEEECSTTCCEEECTTSCCSSCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCC
T ss_pred CcccccccCCccEEECCCCCCCcCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCC
Confidence 3444678899999999999887543 3333 688999999999987777788899999999999998874332 2 678
Q ss_pred CccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481 100 SGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 100 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 178 (258)
++|+.|++.+|.+. .++..+..+++|+.|++++|.+...+ ..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 99999999999988 66777888899999999999988766 45778889999999999988777777888899999999
Q ss_pred cCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 179 RDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++|.++...+..+..+++|+.|++++|++. .+|..+...+.|+.+++++|.+.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 999988666667788899999999999888 56667777788999999999886
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.5e-26 Score=174.81 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=167.4
Q ss_pred cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
..+++|+.|+++++.+.. ...+..+++|++|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 457788888888888753 34577788888899988887642 46778888899999888888666666788888999
Q ss_pred EEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcc
Q 035481 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183 (258)
Q Consensus 105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 183 (258)
|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99988888866666678888889999888888776544 46788888999998888877777778888899999999988
Q ss_pred cCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccch
Q 035481 184 FGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSW 245 (258)
Q Consensus 184 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L 245 (258)
....+..+..+++|+.|++++|.+. +.|++++.++++.|.+++.+|..++.++..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 8777777788889999999888765 346678888888888888888877776654
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-26 Score=181.48 Aligned_cols=223 Identities=20% Similarity=0.214 Sum_probs=180.8
Q ss_pred ceEEecCcCccc-cccCcccc------cCCCCccEEECCCCccccccCccc--cCCcccceeecccccccccCCcccCCC
Q 035481 5 LITLDLSRNNFS-GELSRPIF------SGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLLDNNNFSGKMTDGLLSS 75 (258)
Q Consensus 5 L~~L~l~~~~l~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l 75 (258)
|++|+++++.+. ..++.... .++++|++|++++|.+.+..+..+ ..+++|++|++++|.++.. +..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 677889999884 23443331 258999999999999987777765 7899999999999999865 6655555
Q ss_pred -----CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCC--cCccc--cCCCCccEEEcccccceeec---C-C
Q 035481 76 -----TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS--IPVQL--GNLVCLEFIDISENSLSGSM---V-S 142 (258)
Q Consensus 76 -----~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~~---~-~ 142 (258)
++|++|++++|.+....+..+..+++|++|++.+|.+.+. .+..+ ..+++|+.|++++|.+...+ . .
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 8999999999999977778899999999999999987644 22333 78899999999999987432 1 2
Q ss_pred CCCcCCCcEEEeecccccccCc-cchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcc
Q 035481 143 LSNLSSVEHIYLHNNAINGLIP-IALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221 (258)
Q Consensus 143 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 221 (258)
+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 3467899999999999987653 45566899999999999997 5665555 8999999999999865 55 8899999
Q ss_pred cEEEccCceeec
Q 035481 222 GIMDLSHNRLNG 233 (258)
Q Consensus 222 ~~l~l~~~~~~~ 233 (258)
++|++++|.+++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999999874
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=7.1e-25 Score=168.61 Aligned_cols=208 Identities=18% Similarity=0.168 Sum_probs=181.2
Q ss_pred CCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 2 MKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
+++|+.|+++++.++ .++. +..+++|++|++++|.+.. .+.+..+++|++|++++|.++...+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 578999999999987 5553 5779999999999999875 3578899999999999999987777778899999999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeeccccc
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~ 160 (258)
++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+...+.. +..+++|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999999866667788999999999999999877777788999999999999999876654 578899999999999999
Q ss_pred ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcc
Q 035481 161 GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKL 221 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 221 (258)
+..+..+..+++|+.|++++|.+. ..+++++.|++..|.+.+.+|..++.++..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 888888889999999999999875 346789999999999999888888766543
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=4.6e-24 Score=165.39 Aligned_cols=200 Identities=25% Similarity=0.253 Sum_probs=177.0
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
++++++++++++++++ .+|..+ .++++.|++++|.+....+..|..+++|++|++++|.++.... ...+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 4688999999999998 888776 3689999999999988888889999999999999999875433 267899999
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccc
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAI 159 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~ 159 (258)
|++++|.+. .++..+..+++|+.|++.+|.+++..+..+..+++|+.|++++|.+...+.. +..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999998 6777888999999999999999977777899999999999999999887654 56889999999999999
Q ss_pred cccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 160 NGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 160 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
+...+..+..+++|+.|++++|.++ .+|..+...++|+.|++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9887778888999999999999997 66777778889999999999875
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=6.2e-24 Score=179.70 Aligned_cols=118 Identities=26% Similarity=0.267 Sum_probs=84.2
Q ss_pred CCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEee
Q 035481 124 VCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLR 203 (258)
Q Consensus 124 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 203 (258)
++|+.|++++|.+..++.. .++|+.|++++|.++.... .+++|+.|++++|.++. +| ..+++|+.|+++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence 4455555555554433321 2455555555555553221 23678888888888764 44 456889999999
Q ss_pred CCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 204 GNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 204 ~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+|.+. .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 250 ~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 250 GNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp SSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred CCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 99888 4454 5688999999999998 789999999999999999999875
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=4.1e-28 Score=200.26 Aligned_cols=254 Identities=18% Similarity=0.133 Sum_probs=145.6
Q ss_pred cceEEecCcCccccc---cCcccccCCCCccEEECCCCccccccCcccc-----CCcccceeecccccccccC----Ccc
Q 035481 4 ELITLDLSRNNFSGE---LSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-----NLTHLRSLLLDNNNFSGKM----TDG 71 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~ 71 (258)
+|++|++++|++++. .....+..+++|++|++++|.+....+..+. ..++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 688888888887631 1234567788888888888877543333221 2446777777777665322 223
Q ss_pred cCCCCCccEEEccCccccCCCCCcCC-----CCCccceEEecCccccCC----cCccccCC-------------------
Q 035481 72 LLSSTLLEVLNVSNNKLSGDIPHWIG-----NFSGLWVLLMSENYLQGS----IPVQLGNL------------------- 123 (258)
Q Consensus 72 ~~~l~~L~~l~l~~~~~~~~~~~~l~-----~l~~L~~l~l~~~~~~~~----~~~~~~~~------------------- 123 (258)
+..+++|+++++++|.+....+..+. ..++|+.|++.+|.+... ++..+..+
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 34456666666666655421111111 133455555555444321 12233334
Q ss_pred ----------CCccEEEccccccee-----ecCCCCCcCCCcEEEeecccccccCccchh-----cCCCceEEEccCCcc
Q 035481 124 ----------VCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGLIPIALL-----RSSTLLTLDLRDNKL 183 (258)
Q Consensus 124 ----------~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~ 183 (258)
++|+.|++++|.+.. ++..+..+++|++|++++|.+++.....+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 445555555554433 222233445556666665555432222221 124666666666665
Q ss_pred cCC----CChhhccCCCccEEEeeCCeecccCCccccC-----CCcccEEEccCceeec----CCCcccccccchhhhhh
Q 035481 184 FGR----IPHQINELSNLHFLLLRGNYLQGRIPNQLCQ-----LRKLGIMDLSHNRLNG----PIPSCLGNVSSWREVID 250 (258)
Q Consensus 184 ~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l 250 (258)
+.. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|+.|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 433 2344556688888888888877554444432 5688888888888874 56777888888888888
Q ss_pred cccccCC
Q 035481 251 DYSLLSG 257 (258)
Q Consensus 251 ~~~~~~~ 257 (258)
++|++++
T Consensus 406 ~~N~i~~ 412 (461)
T 1z7x_W 406 SNNCLGD 412 (461)
T ss_dssp CSSSCCH
T ss_pred CCCCCCH
Confidence 8888763
No 73
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=8e-27 Score=186.65 Aligned_cols=248 Identities=20% Similarity=0.156 Sum_probs=134.0
Q ss_pred EecCcCccccccCcccccCCCCccEEECCCCccccccC----ccccCCc-ccceeecccccccccCCcccCCC-----CC
Q 035481 8 LDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLF----PNYMNLT-HLRSLLLDNNNFSGKMTDGLLSS-----TL 77 (258)
Q Consensus 8 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 77 (258)
++++++++++.+| .++...++|++|++++|.+....+ ..|..++ +|++|++++|.++...+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4556666653332 233434446677777666655444 4455565 66667776666654444444332 66
Q ss_pred ccEEEccCccccCCCCCc----CCCC-CccceEEecCccccCCcCcc----ccC-CCCccEEEccccccee-----ecCC
Q 035481 78 LEVLNVSNNKLSGDIPHW----IGNF-SGLWVLLMSENYLQGSIPVQ----LGN-LVCLEFIDISENSLSG-----SMVS 142 (258)
Q Consensus 78 L~~l~l~~~~~~~~~~~~----l~~l-~~L~~l~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~-----~~~~ 142 (258)
|++|++++|.++...+.. +..+ ++|++|++.+|.+.+..+.. +.. +++|+.|++++|.+.+ ....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 667777666665333322 2233 56667777666665443332 222 2466677776666653 1122
Q ss_pred CCCcC-CCcEEEeecccccccCcc----chhcC-CCceEEEccCCcccCCC----Chhhcc-CCCccEEEeeCCeecccC
Q 035481 143 LSNLS-SVEHIYLHNNAINGLIPI----ALLRS-STLLTLDLRDNKLFGRI----PHQINE-LSNLHFLLLRGNYLQGRI 211 (258)
Q Consensus 143 ~~~~~-~L~~l~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~-~~~L~~L~l~~~~l~~~~ 211 (258)
+...+ +|++|++++|.+++..+. .+... ++|++|++++|.+.... +..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 22333 667777777666544332 22333 46777777777665422 223333 346777777777665433
Q ss_pred C----ccccCCCcccEEEccCceeec-------CCCcccccccchhhhhhcccccC
Q 035481 212 P----NQLCQLRKLGIMDLSHNRLNG-------PIPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 212 ~----~~l~~~~~L~~l~l~~~~~~~-------~~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+ ..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|++.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 2 223455667777777666321 22334556666667777766664
No 74
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=6.3e-28 Score=199.09 Aligned_cols=253 Identities=20% Similarity=0.167 Sum_probs=117.4
Q ss_pred CcceEEecCcCccccccCcccccCCC----CccEEECCCCccccc----cCccccCCcccceeecccccccccCCccc--
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCP----SLETLDLSNNNFYGQ----LFPNYMNLTHLRSLLLDNNNFSGKMTDGL-- 72 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~----~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-- 72 (258)
++|++|++++|.+.+..+..++..++ +|++|++++|.+... .+..+..+++|++|++++|.++......+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 44555555555444222222222233 355555555544421 13334445555555555554432211111
Q ss_pred ---CCCCCccEEEccCccccCCC----CCcCCCCCccceEEecCccccCCcCcccc-----CCCCccEEEccccccee--
Q 035481 73 ---LSSTLLEVLNVSNNKLSGDI----PHWIGNFSGLWVLLMSENYLQGSIPVQLG-----NLVCLEFIDISENSLSG-- 138 (258)
Q Consensus 73 ---~~l~~L~~l~l~~~~~~~~~----~~~l~~l~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~-- 138 (258)
...++|++|++++|.++... +..+..+++|++|++.+|.+.......+. ..++|+.|++++|.+..
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 11234555555555444211 22333455666666666555432222221 23466666666666543
Q ss_pred ---ecCCCCCcCCCcEEEeecccccccC-----ccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCe
Q 035481 139 ---SMVSLSNLSSVEHIYLHNNAINGLI-----PIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNY 206 (258)
Q Consensus 139 ---~~~~~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~ 206 (258)
.+..+..+++|+++++++|.+++.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 2233345566777777777655331 11122356666777766665432 33444556666666666666
Q ss_pred ecccCCccccC-----CCcccEEEccCceeecC----CCcccccccchhhhhhccccc
Q 035481 207 LQGRIPNQLCQ-----LRKLGIMDLSHNRLNGP----IPSCLGNVSSWREVIDDYSLL 255 (258)
Q Consensus 207 l~~~~~~~l~~-----~~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~ 255 (258)
+.+..+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|.+
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence 54332222221 13455555555554422 233344445555555555544
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.7e-23 Score=170.64 Aligned_cols=230 Identities=22% Similarity=0.290 Sum_probs=121.1
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|++++|+++ .+| .|.++++|++|++++|.+.+. +.. .++|++|++++|.++. .+ .+..+++|++++
T Consensus 131 ~~L~~L~L~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLP--ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCC-CCc--ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 46777777777777 466 266777777777777766532 111 1355556666555543 22 344455555555
Q ss_pred ccCccccC-------------------CCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC
Q 035481 83 VSNNKLSG-------------------DIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL 143 (258)
Q Consensus 83 l~~~~~~~-------------------~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 143 (258)
+++|.+.. .+| .+..+++|+.+++.+|.+.+ .+. .+++|+.|++++|.+...+..
T Consensus 202 l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~~- 275 (454)
T 1jl5_A 202 ADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPEL- 275 (454)
T ss_dssp CCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCCC-
T ss_pred CCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCcc-
Confidence 55444431 233 24455555555555555542 221 123444444444444332221
Q ss_pred CCcCCCcEEEeecccccccC--cc-------------chhcC-CCceEEEccCCcccCCCChhhccCCCccEEEeeCCee
Q 035481 144 SNLSSVEHIYLHNNAINGLI--PI-------------ALLRS-STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYL 207 (258)
Q Consensus 144 ~~~~~L~~l~l~~~~~~~~~--~~-------------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 207 (258)
.++|+++++++|.+++.. +. .+... ++|++|++++|.++. +|. .+++|++|++++|.+
T Consensus 276 --~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHL 349 (454)
T ss_dssp --CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred --cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCcc
Confidence 134455555555444311 00 01112 467777777777653 332 257888999988888
Q ss_pred cccCCccccCCCcccEEEccCceeec--CCCcccccc-------------cchhhhhhcccccCC
Q 035481 208 QGRIPNQLCQLRKLGIMDLSHNRLNG--PIPSCLGNV-------------SSWREVIDDYSLLSG 257 (258)
Q Consensus 208 ~~~~~~~l~~~~~L~~l~l~~~~~~~--~~~~~~~~l-------------~~L~~l~l~~~~~~~ 257 (258)
+ .+|. .+++|++|++++|.+++ .+|..+..+ ++|+.|++++|++++
T Consensus 350 ~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 350 A-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp S-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred c-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 7 4554 46789999999999987 678888888 889999999999876
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.1e-24 Score=162.90 Aligned_cols=196 Identities=18% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccceeecccccccccCCcccCCCCCccEEEccCcc-ccCCCCCcCCCCCccceEEecC-ccccCCcCccccCCCCccEEE
Q 035481 53 HLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNK-LSGDIPHWIGNFSGLWVLLMSE-NYLQGSIPVQLGNLVCLEFID 130 (258)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~l~~l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~ 130 (258)
.+++|++++|.++...+..+..+++|+++++++|. +....+..+..+++|+.|++.+ |.++...+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444443333334444444444444443 3323333444445555555544 444433334444555555555
Q ss_pred cccccceeecCCCCCcCCCc---EEEeecc-cccccCccchhcCCCce-EEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481 131 ISENSLSGSMVSLSNLSSVE---HIYLHNN-AINGLIPIALLRSSTLL-TLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205 (258)
Q Consensus 131 l~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (258)
+++|.+..++. +..+++++ ++++++| .++...+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 55555544333 44445555 6777777 66665556666777777 7777777776333334444 77888888887
Q ss_pred e-ecccCCccccCC-CcccEEEccCceeecCCCcccccccchhhhhhccc
Q 035481 206 Y-LQGRIPNQLCQL-RKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYS 253 (258)
Q Consensus 206 ~-l~~~~~~~l~~~-~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 253 (258)
+ +.+..+..+..+ ++|++|++++|.++ .+|.. .+++|+.|.+.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 4 765656677777 77888888888776 45543 5666666666655
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=5.2e-24 Score=160.76 Aligned_cols=205 Identities=16% Similarity=0.186 Sum_probs=169.1
Q ss_pred cccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-ccccCCcccCCCCCccEEEccC-ccccCCC
Q 035481 15 FSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN-FSGKMTDGLLSSTLLEVLNVSN-NKLSGDI 92 (258)
Q Consensus 15 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~ 92 (258)
++ .+|. + .+++++|++++|.+..+.+..|.++++|++|++++|. ++...+..+..+++|+++++++ |.+....
T Consensus 23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 55 6666 2 3589999999999987777788999999999999996 8766666788899999999998 8888666
Q ss_pred CCcCCCCCccceEEecCccccCCcCccccCCCCcc---EEEcccc-cceeecC-CCCCcCCCc-EEEeecccccccCccc
Q 035481 93 PHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLE---FIDISEN-SLSGSMV-SLSNLSSVE-HIYLHNNAINGLIPIA 166 (258)
Q Consensus 93 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~l~l~~~~~~~~~~~~ 166 (258)
+..+..+++|+++++.+|.+++ +|. +..+++|+ .|++++| .+...+. .+..+++|+ ++++++|.++......
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 6778889999999999999885 554 77888887 9999999 8887765 477899999 9999999998666655
Q ss_pred hhcCCCceEEEccCCc-ccCCCChhhccC-CCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481 167 LLRSSTLLTLDLRDNK-LFGRIPHQINEL-SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR 230 (258)
Q Consensus 167 ~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 230 (258)
+.. ++|+.|++++|. ++...+..+..+ ++|+.|++++|++.+. |.. .+++|+.|+++++.
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 655 899999999995 876667788888 9999999999999854 433 56789999988763
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=6.3e-25 Score=172.08 Aligned_cols=225 Identities=21% Similarity=0.211 Sum_probs=177.9
Q ss_pred CCccEEECCCCccccccCc---cccCCcccceeecccccccccCCccc--CCCCCccEEEccCccccCCCC----CcCCC
Q 035481 28 PSLETLDLSNNNFYGQLFP---NYMNLTHLRSLLLDNNNFSGKMTDGL--LSSTLLEVLNVSNNKLSGDIP----HWIGN 98 (258)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~----~~l~~ 98 (258)
..++.+.+.++.+...... .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4467788887766432211 12234679999999999987777776 788999999999999875433 23346
Q ss_pred CCccceEEecCccccCCcCccccCCCCccEEEccccccee---ec--CCCCCcCCCcEEEeecccccccCcc---chhcC
Q 035481 99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSG---SM--VSLSNLSSVEHIYLHNNAINGLIPI---ALLRS 170 (258)
Q Consensus 99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~ 170 (258)
+++|++|++.+|.+.+..+..+..+++|++|++++|.+.. .+ ..+..+++|++|++++|.++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 8999999999999987777889999999999999998754 22 2335788999999999998743221 35678
Q ss_pred CCceEEEccCCcccCCCChhhccC---CCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhh
Q 035481 171 STLLTLDLRDNKLFGRIPHQINEL---SNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE 247 (258)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 247 (258)
++|++|++++|.+....|..+..+ ++|++|++++|++. .+|..+. ++|++|++++|++++ +|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccE
Confidence 999999999999987767666665 79999999999998 5666654 799999999999984 454 788999999
Q ss_pred hhhcccccCC
Q 035481 248 VIDDYSLLSG 257 (258)
Q Consensus 248 l~l~~~~~~~ 257 (258)
|++++|+|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999975
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.8e-26 Score=179.22 Aligned_cols=245 Identities=16% Similarity=0.160 Sum_probs=177.7
Q ss_pred ceEEecCcCccccccCcccccCC--CCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccEE
Q 035481 5 LITLDLSRNNFSGELSRPIFSGC--PSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVL 81 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l 81 (258)
++.++++++.+.+ ..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 6778888876652 233444 7888999998888755443 55788899999998887643 45567778889999
Q ss_pred EccCccccCCCCCcCCCCCccceEEecCc-cccCC-cCccccCCCCccEEEcccc-ccee--ecCCCCCcC-CCcEEEee
Q 035481 82 NVSNNKLSGDIPHWIGNFSGLWVLLMSEN-YLQGS-IPVQLGNLVCLEFIDISEN-SLSG--SMVSLSNLS-SVEHIYLH 155 (258)
Q Consensus 82 ~l~~~~~~~~~~~~l~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~~~-~L~~l~l~ 155 (258)
++++|.++...+..+..+++|++|++.+| .+++. .+..+..+++|+.|++++| .+.. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99888776555666777889999999888 45532 4455677888999999888 7764 344456777 89999999
Q ss_pred ccc--cc-ccCccchhcCCCceEEEccCCc-ccCCCChhhccCCCccEEEeeCCe-ecccCCccccCCCcccEEEccCce
Q 035481 156 NNA--IN-GLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINELSNLHFLLLRGNY-LQGRIPNQLCQLRKLGIMDLSHNR 230 (258)
Q Consensus 156 ~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~ 230 (258)
+|. ++ ...+..+..+++|++|++++|. ++...+..+..+++|++|++++|. +.......+.++++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 884 44 2345566778899999999988 555666677888999999999884 43333346778889999999988
Q ss_pred eecCCCccccccc-chhhhhhcccccCCC
Q 035481 231 LNGPIPSCLGNVS-SWREVIDDYSLLSGF 258 (258)
Q Consensus 231 ~~~~~~~~~~~l~-~L~~l~l~~~~~~~~ 258 (258)
+. .+.+..+. .++.|++++|.++++
T Consensus 283 i~---~~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 283 VP---DGTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp SC---TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred cC---HHHHHHHHhhCcceEEecccCccc
Confidence 33 23455553 477777888888763
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=6.1e-27 Score=189.00 Aligned_cols=234 Identities=17% Similarity=0.164 Sum_probs=137.5
Q ss_pred ccCCCCccEEECCCCccccccC----ccccCCcccceeeccccccc---ccCCcc-------cCCCCCccEEEccCcccc
Q 035481 24 FSGCPSLETLDLSNNNFYGQLF----PNYMNLTHLRSLLLDNNNFS---GKMTDG-------LLSSTLLEVLNVSNNKLS 89 (258)
Q Consensus 24 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~l~l~~~~~~ 89 (258)
+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+. ...+.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3456667777777776654322 22456667777777665332 111222 245667777777777665
Q ss_pred C----CCCCcCCCCCccceEEecCccccCCcCccc----cCC---------CCccEEEccccccee--ec---CCCCCcC
Q 035481 90 G----DIPHWIGNFSGLWVLLMSENYLQGSIPVQL----GNL---------VCLEFIDISENSLSG--SM---VSLSNLS 147 (258)
Q Consensus 90 ~----~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~--~~---~~~~~~~ 147 (258)
. .++..+..+++|++|++.+|.+....+..+ ..+ ++|+.|++++|.+.. .+ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 3 234455566777777777776643222222 222 677777777776642 11 2344556
Q ss_pred CCcEEEeeccccccc-----CccchhcCCCceEEEccCCccc----CCCChhhccCCCccEEEeeCCeeccc----CCcc
Q 035481 148 SVEHIYLHNNAINGL-----IPIALLRSSTLLTLDLRDNKLF----GRIPHQINELSNLHFLLLRGNYLQGR----IPNQ 214 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~ 214 (258)
+|++|++++|.++.. .+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+.+. ++..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 777777777766521 2225556677777777777663 34455566667777777777776543 2344
Q ss_pred cc--CCCcccEEEccCceeec----CCCccc-ccccchhhhhhcccccCC
Q 035481 215 LC--QLRKLGIMDLSHNRLNG----PIPSCL-GNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 215 l~--~~~~L~~l~l~~~~~~~----~~~~~~-~~l~~L~~l~l~~~~~~~ 257 (258)
+. .+++|++|+|++|.+++ .+|..+ ..+++|+.|++++|++++
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 42 26677777777777764 355555 446777777777777764
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4e-23 Score=161.57 Aligned_cols=190 Identities=21% Similarity=0.314 Sum_probs=99.8
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|+++++.++ .++ .+..+++|++|++++|.+....+ +..+++|++|++++|.++.. ..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 45556666666555 343 23455666666666665543322 55555666666666555432 2355555566666
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
+++|.+.. .+ .+..+++|+.|++.+|.+.+..+ +..+++|+.|++++|.+...+. +..+++|+.|++++|.+++.
T Consensus 114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC
Confidence 66555542 22 24555556666665555553321 4455555566665555554333 44555555555555555433
Q ss_pred CccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 163 IPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
.+ +..+++|++|++++|.+.... .+..+++|+.|++++|.+.
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred hh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 22 445555555555555554222 2455555555555555554
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.9e-22 Score=165.53 Aligned_cols=228 Identities=28% Similarity=0.337 Sum_probs=140.0
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
++|++|++++|+++ .++. ..++|++|++++|.+.+ .+ .|.++++|++|++++|+++. .+.. ..+|++++
T Consensus 111 ~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEE
Confidence 45666677666665 3332 12689999999999986 33 68999999999999999874 3332 35899999
Q ss_pred ccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeeccccccc
Q 035481 83 VSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 83 l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
+++|.+.. .+ .+..+++|+.+++.+|.+.+ .+.. .++|+.|++++|.+..++ .+..+++|+++++++|.+++.
T Consensus 180 L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 180 AGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred CcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCcc
Confidence 99999884 45 57889999999998888774 3322 246677777777666444 355666666666666655532
Q ss_pred Cccch-----------------hcCCCceEEEccCCcccC--CCChhh-------------ccC-CCccEEEeeCCeecc
Q 035481 163 IPIAL-----------------LRSSTLLTLDLRDNKLFG--RIPHQI-------------NEL-SNLHFLLLRGNYLQG 209 (258)
Q Consensus 163 ~~~~~-----------------~~~~~L~~L~l~~~~~~~--~~~~~~-------------~~~-~~L~~L~l~~~~l~~ 209 (258)
.. .. ..+++|+.|++++|.++. ..+..+ ... ++|++|++++|++.+
T Consensus 253 ~~-~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 253 PD-LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CS-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC
T ss_pred cc-cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc
Confidence 11 10 012344444444444432 111100 011 245555555555442
Q ss_pred cCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 210 RIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 210 ~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
+|.. +++|+.|++++|.++ .+|. .+++|+.|++++|++++
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred -cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 2222 355666666666665 3554 35666777777777665
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=4.7e-23 Score=161.13 Aligned_cols=194 Identities=22% Similarity=0.269 Sum_probs=163.2
Q ss_pred cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
..+++|++|+++++.+... +.+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 4578999999999988753 367889999999999999875443 88899999999999998743 36788999999
Q ss_pred EEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCccc
Q 035481 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184 (258)
Q Consensus 105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 184 (258)
|++.+|.+.+. + .+..+++|+.|++++|.+...+. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.
T Consensus 112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99999998854 3 38889999999999999887654 7788999999999999886543 788999999999999986
Q ss_pred CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 185 GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 185 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
...+ +..+++|+.|++++|++.+.. .+..+++|+.|++++|.+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4433 788999999999999998654 47889999999999999974
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=7e-23 Score=155.68 Aligned_cols=180 Identities=21% Similarity=0.230 Sum_probs=155.1
Q ss_pred cccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEc
Q 035481 52 THLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDI 131 (258)
Q Consensus 52 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 131 (258)
...++++++++.++ ..|..+ .+.++.|++++|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678899988887 344433 368999999999998777778899999999999999999777778899999999999
Q ss_pred ccccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481 132 SENSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR 210 (258)
Q Consensus 132 ~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 210 (258)
++|.+...+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999987664 457889999999999999877777788899999999999999877777888999999999999999977
Q ss_pred CCccccCCCcccEEEccCceeecC
Q 035481 211 IPNQLCQLRKLGIMDLSHNRLNGP 234 (258)
Q Consensus 211 ~~~~l~~~~~L~~l~l~~~~~~~~ 234 (258)
.+..+..+++|+.|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888999999999999999753
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=7.1e-26 Score=182.76 Aligned_cols=234 Identities=21% Similarity=0.237 Sum_probs=181.2
Q ss_pred CCcceEEecCcCccccccCc---ccccCCCCccEEECCCCcccc---ccCcc-------ccCCcccceeecccccccc--
Q 035481 2 MKELITLDLSRNNFSGELSR---PIFSGCPSLETLDLSNNNFYG---QLFPN-------YMNLTHLRSLLLDNNNFSG-- 66 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~---~~~~~-------~~~~~~L~~L~l~~~~~~~-- 66 (258)
+++|++|++++|.+.+..+. ..+..+++|++|++++|.+.. ..+.. +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 67899999999998743222 236789999999999975532 22222 3678999999999999875
Q ss_pred --cCCcccCCCCCccEEEccCccccCCCC----CcCCCC---------CccceEEecCcccc-CCcC---ccccCCCCcc
Q 035481 67 --KMTDGLLSSTLLEVLNVSNNKLSGDIP----HWIGNF---------SGLWVLLMSENYLQ-GSIP---VQLGNLVCLE 127 (258)
Q Consensus 67 --~~~~~~~~l~~L~~l~l~~~~~~~~~~----~~l~~l---------~~L~~l~l~~~~~~-~~~~---~~~~~~~~L~ 127 (258)
..+..+..+++|++|++++|.++...+ ..+..+ ++|++|++.+|.+. ...+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 244567788999999999998863222 223333 89999999999986 2333 3566788999
Q ss_pred EEEccccccee-----ec-CCCCCcCCCcEEEeeccccc----ccCccchhcCCCceEEEccCCcccCC----CChhhc-
Q 035481 128 FIDISENSLSG-----SM-VSLSNLSSVEHIYLHNNAIN----GLIPIALLRSSTLLTLDLRDNKLFGR----IPHQIN- 192 (258)
Q Consensus 128 ~L~l~~~~~~~-----~~-~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~- 192 (258)
.|++++|.+.. .. ..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.++.. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999999873 22 36778899999999999986 44566788899999999999998644 345553
Q ss_pred -cCCCccEEEeeCCeecc----cCCccc-cCCCcccEEEccCceeecCC
Q 035481 193 -ELSNLHFLLLRGNYLQG----RIPNQL-CQLRKLGIMDLSHNRLNGPI 235 (258)
Q Consensus 193 -~~~~L~~L~l~~~~l~~----~~~~~l-~~~~~L~~l~l~~~~~~~~~ 235 (258)
.+++|+.|++++|.+.+ .++..+ .++++|++|++++|.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 38999999999999987 366666 56899999999999998654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=8e-24 Score=165.80 Aligned_cols=225 Identities=17% Similarity=0.161 Sum_probs=174.1
Q ss_pred cceEEecCcCccccccCccc--ccCCCCccEEECCCCccccccCccc--cCCcccceeecccccccccCC----cccCCC
Q 035481 4 ELITLDLSRNNFSGELSRPI--FSGCPSLETLDLSNNNFYGQLFPNY--MNLTHLRSLLLDNNNFSGKMT----DGLLSS 75 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~l 75 (258)
.++.+.+.+..+.+.....+ +...++|++|++++|.+.+..+..+ ..+++|++|++++|.++...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35666666665542111111 2235679999999999987777777 789999999999999875333 234568
Q ss_pred CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCC--c--CccccCCCCccEEEcccccceeecC----CCCCcC
Q 035481 76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGS--I--PVQLGNLVCLEFIDISENSLSGSMV----SLSNLS 147 (258)
Q Consensus 76 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 147 (258)
++|++|++++|.+....+..+..+++|++|++.+|.+.+. . +..+..+++|++|++++|.+...+. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8999999999999877778899999999999999987532 1 2234678899999999999865433 235678
Q ss_pred CCcEEEeecccccccCccchhcC---CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEE
Q 035481 148 SVEHIYLHNNAINGLIPIALLRS---STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIM 224 (258)
Q Consensus 148 ~L~~l~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l 224 (258)
+|++|++++|.+++..+..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 99999999999987766555555 79999999999998 5565553 7999999999999854 33 6788999999
Q ss_pred EccCceeec
Q 035481 225 DLSHNRLNG 233 (258)
Q Consensus 225 ~l~~~~~~~ 233 (258)
++++|++++
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999873
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.8e-22 Score=150.58 Aligned_cols=176 Identities=20% Similarity=0.199 Sum_probs=108.4
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
..++++++++.++ .+|..+ .++++.|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777777 677654 256777788777777666666777777777777777776655556666777777777
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEeeccccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~ 162 (258)
++|.+....+..+..+++|++|++.+|.+++..+..+..+++|+.|++++|.+...+. .+..+++|++|++++|.++..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7777665555556666677777776666664444445555666666666555554433 234444555555555544444
Q ss_pred CccchhcCCCceEEEccCCcc
Q 035481 163 IPIALLRSSTLLTLDLRDNKL 183 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~ 183 (258)
.+..+..+++|+.|++++|.+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCB
T ss_pred CHHHHhCCCCCCEEEeeCCce
Confidence 433444444444444444444
No 88
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=8.2e-22 Score=166.79 Aligned_cols=218 Identities=23% Similarity=0.253 Sum_probs=136.7
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+++.|++++++++ .+|..++ ++|+.|++++|.+..+.. .+++|++|++++|.++. .+. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4677777777777 6776553 677777777777763322 45677777777777663 222 4566777777
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-----------------CCc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-----------------SNL 146 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~ 146 (258)
++|.+.. ++. .+++|+.|++.+|.++. +|.. +++|+.|+++.|.+..++... ..+
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~ 180 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP 180 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccC
Confidence 7776652 232 34566666666666552 2321 355666666666554433211 223
Q ss_pred CCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEc
Q 035481 147 SSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDL 226 (258)
Q Consensus 147 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l 226 (258)
++|+.|++++|.+++... .+++|+.|++++|.++ .++. .+++|+.|++++|.+++ +| ..+++|+.|++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 556666666666654321 2356666666666665 2332 24778888888888874 44 35578889999
Q ss_pred cCceeecCCCcccccccchhhhhhcccccCC
Q 035481 227 SHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.++ .+|. .+++|+.|++++|.|+.
T Consensus 249 s~N~L~-~lp~---~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 249 SGNRLT-SLPM---LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCCS
T ss_pred CCCCCC-cCCc---ccccCcEEeCCCCCCCc
Confidence 998887 5675 66788888899988864
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1e-24 Score=172.76 Aligned_cols=234 Identities=16% Similarity=0.159 Sum_probs=181.9
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccc-cCccccCCcccceeecccccccccCCcccCCCCCccEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQ-LFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVL 81 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 81 (258)
++++.++++++.+.+ .+... ..+++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~-~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ-PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECS-CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccc-cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 678999999999984 44444 4689999999999988654 55567889999999999999876667778889999999
Q ss_pred EccCc-cccC-CCCCcCCCCCccceEEecCc-cccCC-cCccccCCC-CccEEEccccc--ce--eecCCCCCcCCCcEE
Q 035481 82 NVSNN-KLSG-DIPHWIGNFSGLWVLLMSEN-YLQGS-IPVQLGNLV-CLEFIDISENS--LS--GSMVSLSNLSSVEHI 152 (258)
Q Consensus 82 ~l~~~-~~~~-~~~~~l~~l~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~--~~~~~~~~~~~L~~l 152 (258)
++++| .++. ..+..+..+++|++|++.+| .+++. .+..+..++ +|+.|++++|. +. ..+..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99998 4553 24455778999999999999 77643 455677889 99999999994 43 244455678999999
Q ss_pred Eeeccc-ccccCccchhcCCCceEEEccCCc-ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481 153 YLHNNA-INGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR 230 (258)
Q Consensus 153 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 230 (258)
++++|. +++.....+..+++|++|++++|. +.......+..+++|+.|++++| +.+.....+. ..+..|++++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 999998 666666788899999999999995 32222235788999999999999 4433222222 246677799999
Q ss_pred eecCCCccccc
Q 035481 231 LNGPIPSCLGN 241 (258)
Q Consensus 231 ~~~~~~~~~~~ 241 (258)
+++..|..++.
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 99888876654
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=5.2e-24 Score=170.34 Aligned_cols=231 Identities=21% Similarity=0.243 Sum_probs=176.1
Q ss_pred CcceEEecCcCccccccCc----ccccCCC-CccEEECCCCccccccCccccCC-----cccceeecccccccccCCcc-
Q 035481 3 KELITLDLSRNNFSGELSR----PIFSGCP-SLETLDLSNNNFYGQLFPNYMNL-----THLRSLLLDNNNFSGKMTDG- 71 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~- 71 (258)
++|++|++++|.++ ..+. ..|..++ +|++|++++|.+....+..+..+ ++|++|++++|.++...+..
T Consensus 22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 45999999999998 5665 6678888 99999999999987766666554 89999999999987655443
Q ss_pred ---cCCC-CCccEEEccCccccCCCCCc----CCC-CCccceEEecCccccCCcCc----cccCCC-CccEEEcccccce
Q 035481 72 ---LLSS-TLLEVLNVSNNKLSGDIPHW----IGN-FSGLWVLLMSENYLQGSIPV----QLGNLV-CLEFIDISENSLS 137 (258)
Q Consensus 72 ---~~~l-~~L~~l~l~~~~~~~~~~~~----l~~-l~~L~~l~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~ 137 (258)
+... ++|++|++++|.++...+.. +.. .++|++|++.+|.+...... .+...+ +|+.|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 79999999999988544433 333 36999999999998754333 344555 9999999999986
Q ss_pred eecC-----CCCCc-CCCcEEEeeccccccc----Cccchhc-CCCceEEEccCCcccCCCC----hhhccCCCccEEEe
Q 035481 138 GSMV-----SLSNL-SSVEHIYLHNNAINGL----IPIALLR-SSTLLTLDLRDNKLFGRIP----HQINELSNLHFLLL 202 (258)
Q Consensus 138 ~~~~-----~~~~~-~~L~~l~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l 202 (258)
.... .+... ++|++|++++|.+++. .+..+.. .++|++|++++|.+....+ ..+..+++|++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 5332 23344 5999999999998863 2334444 5699999999999976544 33466799999999
Q ss_pred eCCeeccc-------CCccccCCCcccEEEccCceeecC
Q 035481 203 RGNYLQGR-------IPNQLCQLRKLGIMDLSHNRLNGP 234 (258)
Q Consensus 203 ~~~~l~~~-------~~~~l~~~~~L~~l~l~~~~~~~~ 234 (258)
++|.+.+. .+..+..+++|+++|+++|.+...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99984432 234667888999999999998754
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=1.1e-21 Score=156.14 Aligned_cols=239 Identities=15% Similarity=0.099 Sum_probs=176.3
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccccccc-CCcccCCCCCccE-EEc
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEV-LNV 83 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-l~l 83 (258)
++++.++++++ ++|.++ .+++++|++++|+++.+.+.+|.++++|++|++++|++... ...+|..++++.. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46778888888 888776 36789999999999877777899999999999999987543 3456777877765 455
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEccc-ccceeecC-CCCCc-CCCcEEEeeccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE-NSLSGSMV-SLSNL-SSVEHIYLHNNAIN 160 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~-~~L~~l~l~~~~~~ 160 (258)
..|.+....+..+..+++|+.+++.+|.+....+..+....++..+++.. +.+...+. .+... ..++.+++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 66788766778888999999999999998866555556666778888865 45555543 33433 46888999999988
Q ss_pred ccCccchhcCCCceEEEccC-CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481 161 GLIPIALLRSSTLLTLDLRD-NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239 (258)
Q Consensus 161 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 239 (258)
...+..+ ...+++++++.+ |.+....+.+|.++++|++|++++|+++...+..+ .+|++|.+.++.--+.+|. +
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-c
Confidence 6655444 456889999975 55554555678889999999999999885444444 4566666655543346674 7
Q ss_pred ccccchhhhhhccc
Q 035481 240 GNVSSWREVIDDYS 253 (258)
Q Consensus 240 ~~l~~L~~l~l~~~ 253 (258)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 88888888887653
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=5.9e-21 Score=151.92 Aligned_cols=222 Identities=18% Similarity=0.156 Sum_probs=175.4
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCcccc-ccCccccCCcccce-eecccccccccCCcccCCCCCccE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYG-QLFPNYMNLTHLRS-LLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
+++++|++++|+++ .++.+.|.++++|++|++++|.+.+ +...+|.+++++++ +.+.+|+++...+.++..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46999999999999 8999999999999999999999854 44567888888776 566678888777888999999999
Q ss_pred EEccCccccCCCCCcCCCCCccceEEecC-ccccCCcCccccCCC-CccEEEcccccceeecCCCCCcCCCcEEEeec-c
Q 035481 81 LNVSNNKLSGDIPHWIGNFSGLWVLLMSE-NYLQGSIPVQLGNLV-CLEFIDISENSLSGSMVSLSNLSSVEHIYLHN-N 157 (258)
Q Consensus 81 l~l~~~~~~~~~~~~l~~l~~L~~l~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~-~ 157 (258)
+++++|.+....+..+....++..+++.. +.+....+..+..+. .++.|++++|.+..++.......+++++.+.+ |
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 99999999855555556667788888865 455544444566554 68999999999999887777778899999975 6
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCc
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHN 229 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~ 229 (258)
.++......+..+++|++|++++|.++...+.. +.+|+.|.+.++...+.+| .+..+++|+.+++.++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 677666778899999999999999997554443 4566777766664444555 4788999999998754
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=138.91 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=98.7
Q ss_pred CccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEee
Q 035481 77 LLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLH 155 (258)
Q Consensus 77 ~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~ 155 (258)
++++++++++.+....+..+..+++|++|++.+|.+.+..+..+..+++|++|++++|.+...+.. +..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555433333444555555555555555534333445555566666665555544332 3455666666666
Q ss_pred cccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCC
Q 035481 156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI 235 (258)
Q Consensus 156 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~ 235 (258)
+|.++...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. +.++.|++++++.|.+++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCcee
Confidence 66666555555666777777777777776555555677777888888777554 34567777788888877777
Q ss_pred Ccccccccc
Q 035481 236 PSCLGNVSS 244 (258)
Q Consensus 236 ~~~~~~l~~ 244 (258)
|+.++.++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 777766654
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=139.12 Aligned_cols=180 Identities=20% Similarity=0.158 Sum_probs=103.2
Q ss_pred EEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCc
Q 035481 7 TLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNN 86 (258)
Q Consensus 7 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~ 86 (258)
.++.+++.++ .+|... .+++++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4555566555 455443 346666666666665554445556666666666666655444444455555555555555
Q ss_pred cccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccc
Q 035481 87 KLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIA 166 (258)
Q Consensus 87 ~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 166 (258)
.+....+..+..+++|++|++.+|.+.+..+..+ ..+++|++|++++|.+++..+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------------------~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF-----------------------DKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------TTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh-----------------------ccCCcCCEEECCCCccceeCHHH
Confidence 5543333334445555555555554443333233 44555555556666555544455
Q ss_pred hhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCc
Q 035481 167 LLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRK 220 (258)
Q Consensus 167 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 220 (258)
+..+++|+.|++++|.+. ..+++|+.|+++.|.+.+.+|..++.++.
T Consensus 144 ~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 566677777777777653 34567778888888777777777665543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.9e-20 Score=145.23 Aligned_cols=188 Identities=24% Similarity=0.360 Sum_probs=152.5
Q ss_pred cEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCc
Q 035481 31 ETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSEN 110 (258)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~ 110 (258)
..+.+....+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+.|++.+|
T Consensus 27 ~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 27 IKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred HHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC
Confidence 3345555554322 3345678999999999988744 347788999999999999884433 888999999999999
Q ss_pred cccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChh
Q 035481 111 YLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQ 190 (258)
Q Consensus 111 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 190 (258)
.+.+ .+ .+..+++|+.|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+....+
T Consensus 101 ~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 101 KVKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCCC-GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cCCC-Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 9874 33 488899999999999998875 4677889999999999998865 578889999999999999875443
Q ss_pred hccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 191 INELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 191 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++..
T Consensus 174 l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 88899999999999999854 358889999999999999974
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.3e-20 Score=142.66 Aligned_cols=186 Identities=20% Similarity=0.280 Sum_probs=152.9
Q ss_pred ecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccc
Q 035481 9 DLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL 88 (258)
Q Consensus 9 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 88 (258)
.+....+++..+ +..+++|+.|++++|.+... +.+..+++|++|++++|.++...+ +..+++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAVT---QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HhcCCCcccccc---hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 444555542222 34578999999999998754 457889999999999999985443 88899999999999998
Q ss_pred cCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchh
Q 035481 89 SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALL 168 (258)
Q Consensus 89 ~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 168 (258)
.. . ..+..+++|+.|++.+|.+.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +.
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hc
Confidence 74 3 3488899999999999998853 4678899999999999999876 567789999999999999987644 88
Q ss_pred cCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481 169 RSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR 210 (258)
Q Consensus 169 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 210 (258)
.+++|+.|++++|.++. .+ .+..+++|+.|++++|.+.+.
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 89999999999999974 33 488999999999999998753
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=136.61 Aligned_cols=153 Identities=24% Similarity=0.226 Sum_probs=123.8
Q ss_pred ccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcC-ccccCCCCccEEEcccccceeecC-CCCCcCCCcEEEee
Q 035481 78 LEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIP-VQLGNLVCLEFIDISENSLSGSMV-SLSNLSSVEHIYLH 155 (258)
Q Consensus 78 L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~l~l~ 155 (258)
-+.++++++.++ .+|..+ ...++.|++.+|.+.+..+ ..+..+++|+.|++++|.+..... .+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 357888888877 455544 3456889999988875533 457788899999999998887664 67788889999999
Q ss_pred cccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 156 NNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 156 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
+|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 998887777778888899999999998887778888888899999999998887778888888889999999988874
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1e-19 Score=152.34 Aligned_cols=186 Identities=25% Similarity=0.312 Sum_probs=111.4
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+++.|++++++++ .+|..+ +++|++|++++|.+..+. ..+++|++|++++|.++. .+. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 5667777777776 466554 256777777777665322 335667777777776664 333 332 6777777
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccC
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLI 163 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 163 (258)
++|.++. +|. .+++|+.|++.+|.+++ +|. .+++|+.|++++|.+..++. +. ++|+.|++++|.++...
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence 7776663 333 46667777777776663 333 35667777777776666554 33 66677777777666332
Q ss_pred ccchhcCCCc-------eEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccC
Q 035481 164 PIALLRSSTL-------LTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQ 217 (258)
Q Consensus 164 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 217 (258)
. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2 322 45 66666666665 44555555666666666666666555555443
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.1e-20 Score=135.88 Aligned_cols=151 Identities=23% Similarity=0.254 Sum_probs=127.8
Q ss_pred cEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecc
Q 035481 79 EVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNN 157 (258)
Q Consensus 79 ~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~ 157 (258)
+.+++.++.++ .+|..+. ++++.|++.+|.+.+..+..+..+++|+.|++++|.+... +..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56778887777 4555443 6899999999998866666888899999999999998876 567888899999999999
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 998777777888999999999999998777888889999999999999998777778888899999999999887
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.4e-19 Score=151.53 Aligned_cols=189 Identities=25% Similarity=0.314 Sum_probs=132.5
Q ss_pred CccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEec
Q 035481 29 SLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMS 108 (258)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~ 108 (258)
+++.|++++|.+.+ .+..+ .++|++|++++|.++ ..+ ..+++|++|++++|.++. +|. +.. +|+.|++.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888765 33333 267888888888877 333 346788888888887774 555 443 78888888
Q ss_pred CccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCC
Q 035481 109 ENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIP 188 (258)
Q Consensus 109 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 188 (258)
+|.+++ +|. .+++|+.|++++|.+..++. .+++|++|++++|.+++. +. +. ++|+.|++++|.++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-chh
Confidence 888775 444 56788888888888776554 457788888888887763 33 43 78888888888876 444
Q ss_pred hhhccCCCc-------cEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccc
Q 035481 189 HQINELSNL-------HFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSS 244 (258)
Q Consensus 189 ~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~ 244 (258)
. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 4 333 56 88888888877 46666667888888888888887777766665543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=3.2e-20 Score=135.80 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481 99 FSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 99 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 178 (258)
+++|+.+++.++.+. ..+ .+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 344444444444444 222 344444555555555533322 23445556666666666665544555666677777777
Q ss_pred cCCcccCCCChhhccCCCccEEEeeCCe-ecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 179 RDNKLFGRIPHQINELSNLHFLLLRGNY-LQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++|.++...+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|+|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777665556666777777777777776 44 333 56677777777777777763 44 56777777777777777764
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=4.9e-20 Score=155.75 Aligned_cols=173 Identities=21% Similarity=0.270 Sum_probs=104.5
Q ss_pred cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
..+++|+.|++++|.+... +.+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.. . ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 3456666666666666432 245666667777776666654332 5566666677666666652 2 24566666677
Q ss_pred EEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCccc
Q 035481 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLF 184 (258)
Q Consensus 105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 184 (258)
|++.+|.+.+. ..+..+++|+.|+++.|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 77666666532 3455666666666666666554 445566666666666666654433 556666666666666664
Q ss_pred CCCChhhccCCCccEEEeeCCeeccc
Q 035481 185 GRIPHQINELSNLHFLLLRGNYLQGR 210 (258)
Q Consensus 185 ~~~~~~~~~~~~L~~L~l~~~~l~~~ 210 (258)
.. ..+..+++|+.|++++|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 32 3456666666666666666543
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.5e-20 Score=148.38 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=89.3
Q ss_pred cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc-EEEeeCCeecccCCccccCCCcccEE
Q 035481 146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH-FLLLRGNYLQGRIPNQLCQLRKLGIM 224 (258)
Q Consensus 146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~l 224 (258)
+++|+.+++.+|.++.+...+|.++++|+.+++.++ +......+|.++++|+ .+++.+ .+....+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 689999999999898888889999999999999998 6667788999999999 999998 6666777899999999999
Q ss_pred EccCceeecCCCcccccccchhhhh
Q 035481 225 DLSHNRLNGPIPSCLGNVSSWREVI 249 (258)
Q Consensus 225 ~l~~~~~~~~~~~~~~~l~~L~~l~ 249 (258)
+++++.++...+.+|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999998855557899999998775
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.5e-19 Score=152.77 Aligned_cols=203 Identities=23% Similarity=0.317 Sum_probs=162.7
Q ss_pred ccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecC
Q 035481 30 LETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSE 109 (258)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~ 109 (258)
+..+.+..+.+... ..+..++.|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++.+
T Consensus 23 l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 44556666655433 2345788999999999998743 357889999999999999884433 78899999999999
Q ss_pred ccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCCh
Q 035481 110 NYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPH 189 (258)
Q Consensus 110 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 189 (258)
|.+.+ .+ .+..+++|+.|+++.|.+... ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+....+
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 99874 33 688899999999999999875 4577889999999999999865 678899999999999999975544
Q ss_pred hhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhh
Q 035481 190 QINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWRE 247 (258)
Q Consensus 190 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~ 247 (258)
+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+.....+..+..+..
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~ 225 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 225 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEeccc
Confidence 88999999999999999854 46889999999999999998543333444444433
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=144.38 Aligned_cols=175 Identities=23% Similarity=0.227 Sum_probs=141.0
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCcccc-CCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
+++++++++++ .+|..+ .+.++.|++++|.+....+..|. .+++|++|++++|.++...+..+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46888888888 788765 35688999999998877777777 88999999999999887777778888999999999
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC----CCcCCCcEEEeeccccc
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL----SNLSSVEHIYLHNNAIN 160 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~ 160 (258)
+|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|++++|.+..++... ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99888666667888899999999999988777778888899999999999888766543 46788888999988888
Q ss_pred ccCccchhcCCC--ceEEEccCCccc
Q 035481 161 GLIPIALLRSST--LLTLDLRDNKLF 184 (258)
Q Consensus 161 ~~~~~~~~~~~~--L~~L~l~~~~~~ 184 (258)
......+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 766666777766 377888888763
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=144.14 Aligned_cols=175 Identities=25% Similarity=0.254 Sum_probs=133.9
Q ss_pred ceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCC-CCCccceEEecCccccCCcCccccCCCCccEEEccc
Q 035481 55 RSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIG-NFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISE 133 (258)
Q Consensus 55 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~-~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 133 (258)
+.++++++.++. .|..+ ...++.|++++|.++...+..+. .+++|+.|++.+|.+.+..+..+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888887763 44433 34588899999888866666666 788999999998888866667788888899999998
Q ss_pred ccceeecC-CCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhh---ccCCCccEEEeeCCeecc
Q 035481 134 NSLSGSMV-SLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQI---NELSNLHFLLLRGNYLQG 209 (258)
Q Consensus 134 ~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~ 209 (258)
|.+...+. .+..+++|+.|++++|.++...+..+..+++|+.|++++|.++...+..+ ..+++|+.|++++|++.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88877654 46778888888888888887777788888888888888888875544444 457888888888888876
Q ss_pred cCCccccCCCc--ccEEEccCceee
Q 035481 210 RIPNQLCQLRK--LGIMDLSHNRLN 232 (258)
Q Consensus 210 ~~~~~l~~~~~--L~~l~l~~~~~~ 232 (258)
..+..+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55566666666 477888888876
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=9.9e-19 Score=130.00 Aligned_cols=152 Identities=19% Similarity=0.175 Sum_probs=132.7
Q ss_pred ceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccc
Q 035481 55 RSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISEN 134 (258)
Q Consensus 55 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 134 (258)
+.++++++.++. .|..+ ..+++.|++++|.+....+..+..+++|+.|++.+|.+.+..+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888888773 44433 368999999999998666678899999999999999999777889999999999999999
Q ss_pred cceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecc
Q 035481 135 SLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQG 209 (258)
Q Consensus 135 ~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 209 (258)
.+..++.. +..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99887755 5689999999999999998888899999999999999999987777788999999999999998863
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=6.3e-19 Score=131.90 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=131.9
Q ss_pred CCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEe
Q 035481 76 TLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYL 154 (258)
Q Consensus 76 ~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l 154 (258)
..-+.++.+++.+. .+|..+ .++|+.|++.+|.+.+..+..+..+++|+.|++++|.+..++.. +..+++|+.|++
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34667888888777 555544 38899999999999987788899999999999999999877644 578899999999
Q ss_pred ecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 155 HNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
++|.++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 999998877777888999999999999997 677788899999999999999987767788899999999999999874
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=4e-19 Score=129.98 Aligned_cols=153 Identities=17% Similarity=0.193 Sum_probs=120.1
Q ss_pred cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
..+++|+.|++++|.+.... .+..+++|++|++++|.++. ...+..+++|+++++++|.+....+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678888888888886332 57778888889988886652 346777888999999888887666777888899999
Q ss_pred EEecCccccCCcCccccCCCCccEEEccccc-ceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcc
Q 035481 105 LLMSENYLQGSIPVQLGNLVCLEFIDISENS-LSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKL 183 (258)
Q Consensus 105 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 183 (258)
|++.+|.+.+..+..+..+++|+.|++++|. +...+ .+..+++|++|++++|.+++.. .+..+++|+.|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 9999888886667778888899999999887 66554 6778888999999999887643 677888999999999886
Q ss_pred c
Q 035481 184 F 184 (258)
Q Consensus 184 ~ 184 (258)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.6e-18 Score=127.69 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=88.7
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccC-ccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLF-PNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
++++++++.++ .+|..+ .+.+++|++++|.+....+ ..|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35677777776 566544 3345677777777665533 345666777777777776665555556666666666666
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccc
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAI 159 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~ 159 (258)
+|.+....+..+..+++|++|++.+|.+.+..+..+..+++|+.|++++|.+... +..+..+++|+.+++++|.+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6666644444556666666666666666655555555555666666555555443 23344444455555544443
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3.3e-21 Score=163.66 Aligned_cols=91 Identities=13% Similarity=-0.013 Sum_probs=58.7
Q ss_pred hhcCCCceEEEccCCc--ccCCCChhh-ccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceeecC-CCccccc
Q 035481 167 LLRSSTLLTLDLRDNK--LFGRIPHQI-NELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGP-IPSCLGN 241 (258)
Q Consensus 167 ~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~-~~~~~~~ 241 (258)
+..+++|+.|++++|. ++......+ ..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3445666666665433 222212222 23677888888888776532 34456788899999999887643 3444567
Q ss_pred ccchhhhhhcccccCC
Q 035481 242 VSSWREVIDDYSLLSG 257 (258)
Q Consensus 242 l~~L~~l~l~~~~~~~ 257 (258)
+++|+.|++++|++++
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 8889999999998875
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=5e-19 Score=135.13 Aligned_cols=170 Identities=21% Similarity=0.277 Sum_probs=114.3
Q ss_pred CCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEE
Q 035481 27 CPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLL 106 (258)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~ 106 (258)
+.++..++++++.+.... .+..+++|++|++++|.++.. + .+..+++|++|++++|.+.... . +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEE
Confidence 344666677777765433 466777888888888877633 2 5667778888888887776333 2 67777888888
Q ss_pred ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481 107 MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186 (258)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 186 (258)
+.+|.+.+. +. +.. ++|+.|++++|.+.... .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+...
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 887777643 32 222 67777777777776643 466677777777777777654 2566677777777777777544
Q ss_pred CChhhccCCCccEEEeeCCeeccc
Q 035481 187 IPHQINELSNLHFLLLRGNYLQGR 210 (258)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~l~~~ 210 (258)
..+..+++|+.|++++|.+...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5566677777777777776643
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.3e-20 Score=160.13 Aligned_cols=253 Identities=14% Similarity=0.050 Sum_probs=111.0
Q ss_pred CCcceEEecCcCcccccc---CcccccCCCCccEEECCCCcccccc----CccccCCcccceeecccccccccCCcccCC
Q 035481 2 MKELITLDLSRNNFSGEL---SRPIFSGCPSLETLDLSNNNFYGQL----FPNYMNLTHLRSLLLDNNNFSGKMTDGLLS 74 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 74 (258)
|++|++|++++|.+++.- ....+.++++|+.|+++++.+.... +..+.++++|++|++++|.+.. .+..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 456666666666554221 1112344566666666666554111 1223345666666666655442 2233344
Q ss_pred CCCccEEEccCcccc---CCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee--cCCCCCc---
Q 035481 75 STLLEVLNVSNNKLS---GDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS--MVSLSNL--- 146 (258)
Q Consensus 75 l~~L~~l~l~~~~~~---~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~--- 146 (258)
+++|+.++++..... ......+..+++|+.+.+.+.... ..+..+..+++|+.|++++|.+... ...+..+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 445555554421111 111122333444444444332211 2333334444555555555443221 1112333
Q ss_pred ---------------------CCCcEEEeec-----------cccccc-CccchhcCCCceEEEccCCcccCCCChhhcc
Q 035481 147 ---------------------SSVEHIYLHN-----------NAINGL-IPIALLRSSTLLTLDLRDNKLFGRIPHQINE 193 (258)
Q Consensus 147 ---------------------~~L~~l~l~~-----------~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 193 (258)
++|++|++.+ +.++.. .......+++|++|+++.+.++......+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 4455555542 222211 1111233455555555444443322223332
Q ss_pred -CCCccEEEee----CCeeccc-----CCccccCCCcccEEEccCce--eecCCCcccc-cccchhhhhhcccccC
Q 035481 194 -LSNLHFLLLR----GNYLQGR-----IPNQLCQLRKLGIMDLSHNR--LNGPIPSCLG-NVSSWREVIDDYSLLS 256 (258)
Q Consensus 194 -~~~L~~L~l~----~~~l~~~-----~~~~l~~~~~L~~l~l~~~~--~~~~~~~~~~-~l~~L~~l~l~~~~~~ 256 (258)
+++|+.|+++ .+.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.++
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 5566666664 2233321 11224456666666665433 3322222222 3677777777777765
No 114
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=2.5e-17 Score=132.85 Aligned_cols=238 Identities=7% Similarity=0.016 Sum_probs=152.0
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
+|+.+.+.++ ++ .++..+|.++ +|+.+.+.. .+..+...+|.+|++|+.+++.++.++.....+|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 3555555544 44 5666666653 466666664 45555566667777777777776666655445554 466777776
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeeccccc--
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAIN-- 160 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~-- 160 (258)
..+ +.......|..+++|+.+.+..+ ++.....+|.. .+|+.+.+..+ +..+ ...+..|++|+.+.+.++.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 543 44344556667777777777653 33233445555 56777777433 3333 456677888888888777654
Q ss_pred ---ccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481 161 ---GLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237 (258)
Q Consensus 161 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 237 (258)
......|.+|++|+.+.+.++ +......+|.+|++|+.+.+..+ +......+|.+| +|+.+.+.+|......+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 456677888888888888843 55566677888888888888665 444566788888 888888888876644445
Q ss_pred cccccc-chhhhhhccc
Q 035481 238 CLGNVS-SWREVIDDYS 253 (258)
Q Consensus 238 ~~~~l~-~L~~l~l~~~ 253 (258)
.|..++ .++.|.+-.+
T Consensus 364 ~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SCCCSCTTCCEEEECGG
T ss_pred cccCCCCCccEEEeCHH
Confidence 566664 5555555443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=9e-18 Score=125.60 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=131.1
Q ss_pred ccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcc
Q 035481 53 HLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDIS 132 (258)
Q Consensus 53 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 132 (258)
.-+.++++++.++ ..|..+ .++|++|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4567888888776 344433 4889999999999997778889999999999999999986666678899999999999
Q ss_pred cccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeeccc
Q 035481 133 ENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGR 210 (258)
Q Consensus 133 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 210 (258)
+|.+...+.. +..+++|++|++++|.++ .++..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9999887654 578999999999999998 4566778999999999999999877777889999999999999988743
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-18 Score=132.09 Aligned_cols=168 Identities=25% Similarity=0.295 Sum_probs=114.1
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
++..++++++.++ .++ .+..+++|++|++++|.+... +.+..+++|++|++++|.++...+ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~-~~~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVT-DLV--SQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTT-SEE--CHHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCcc-ccc--chhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 3445566667666 344 245677778888887777643 256677778888888777764433 667777888888
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccC
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLI 163 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 163 (258)
++|.+.. .+... . ++|+.|++.+|.+++. ..+..+++|+.|++++|.+.+.+ .+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKN-LNGIP-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSC-CTTCC-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCC-cCccc-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-
Confidence 8777763 33222 2 7778888877777643 24677777888888877776654 566677788888888777755
Q ss_pred ccchhcCCCceEEEccCCcccCC
Q 035481 164 PIALLRSSTLLTLDLRDNKLFGR 186 (258)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~ 186 (258)
..+..+++|+.|++++|.+...
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 5566777788888887777533
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=3.4e-19 Score=140.63 Aligned_cols=110 Identities=11% Similarity=0.069 Sum_probs=85.7
Q ss_pred cCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCccc-EE
Q 035481 146 LSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG-IM 224 (258)
Q Consensus 146 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~-~l 224 (258)
..++..+.+.++-...........+++|+.+++++|.++.....+|.++++|+.|++.+| +....+.+|.+|.+|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 345556666554322111122234899999999999998888889999999999999998 6667788999999999 99
Q ss_pred EccCceeecCCCcccccccchhhhhhcccccCC
Q 035481 225 DLSHNRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 225 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
++.+ .++...+.+|.+|++|+.|++++|.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 9998 6664456889999999999998888753
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.76 E-value=4.1e-17 Score=131.60 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=186.7
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEc
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNV 83 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 83 (258)
.++.+.+.+. ++ .++..+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|..+.+|+.+++
T Consensus 114 ~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4555555443 55 6778888886 7999999876 777778888885 799999986 566677788999999999999
Q ss_pred cCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeeccccccc
Q 035481 84 SNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNNAINGL 162 (258)
Q Consensus 84 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~ 162 (258)
..+.+.......+. +.+|+.+.+..+ +......+|..|++|+.+++..+ +..+. ..+.. ..|+.+.+. +.++.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 98888755445554 689999999754 55456678899999999999875 44433 34445 789999995 446667
Q ss_pred CccchhcCCCceEEEccCCccc-----CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481 163 IPIALLRSSTLLTLDLRDNKLF-----GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 237 (258)
...+|.++++|+.+.+.++... .....+|.+|++|+.+.+..+ +......+|.+|.+|+.+.|..+ ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 7889999999999999988764 366678999999999999954 66677789999999999999665 5534467
Q ss_pred ccccccchhhhhhcccccC
Q 035481 238 CLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 238 ~~~~l~~L~~l~l~~~~~~ 256 (258)
+|.++ +|+.+.+.+|.+.
T Consensus 341 aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SSSSS-CCCEEEECCSSCC
T ss_pred hCCCC-CCCEEEEcCCCCc
Confidence 89999 9999999988653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=5.5e-18 Score=123.29 Aligned_cols=129 Identities=21% Similarity=0.257 Sum_probs=98.0
Q ss_pred ceEEecCccccCCcCccccCCCCccEEEcccccceeecCC--CCCcCCCcEEEeecccccccCccchhcCCCceEEEccC
Q 035481 103 WVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS--LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180 (258)
Q Consensus 103 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 180 (258)
+.+++.++.+. .+|..+. .+++.|++++|.+...+.. +..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67777777776 4555443 3788888888888766543 66778888888888888777777777888888888888
Q ss_pred CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecC
Q 035481 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGP 234 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~ 234 (258)
|.++...+..+.++++|++|++++|++.+..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888766666777788888888888888777777777888888888888887643
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=1.5e-20 Score=159.69 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=140.6
Q ss_pred CCcceEEecCcCccccccC---cccccCCCCccEEECCCCc--cccccCcc-ccCCcccceeeccccc------------
Q 035481 2 MKELITLDLSRNNFSGELS---RPIFSGCPSLETLDLSNNN--FYGQLFPN-YMNLTHLRSLLLDNNN------------ 63 (258)
Q Consensus 2 ~~~L~~L~l~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~--~~~~~~~~-~~~~~~L~~L~l~~~~------------ 63 (258)
+++|++|++++|.+++..+ ......+++|+.|++++|. +....... +..+++|++|++++|.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 6889999999888763221 1223456788888888775 21111111 1235666666666551
Q ss_pred --------------------------------------cccc----CCcccCCCCCccEEEccCccccCC-CCCcCCCCC
Q 035481 64 --------------------------------------FSGK----MTDGLLSSTLLEVLNVSNNKLSGD-IPHWIGNFS 100 (258)
Q Consensus 64 --------------------------------------~~~~----~~~~~~~l~~L~~l~l~~~~~~~~-~~~~l~~l~ 100 (258)
+... .+..+..+++|++|+++++.++.. ....+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 0000 001111357888888888775421 122245677
Q ss_pred ccceEEecCccccCC-cCccccCCCCccEEEc----------------------------------ccccceee-cCCCC
Q 035481 101 GLWVLLMSENYLQGS-IPVQLGNLVCLEFIDI----------------------------------SENSLSGS-MVSLS 144 (258)
Q Consensus 101 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l----------------------------------~~~~~~~~-~~~~~ 144 (258)
+|+.|.+.++ +... .+.....+++|+.|++ ..+.+... ...+.
T Consensus 315 ~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 315 KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 7777777765 2211 1111223555666655 22222211 01111
Q ss_pred -CcCCCcEEEee--c----cccccc-----CccchhcCCCceEEEccCCcccCCCChhhcc-CCCccEEEeeCCeecccC
Q 035481 145 -NLSSVEHIYLH--N----NAINGL-----IPIALLRSSTLLTLDLRDNKLFGRIPHQINE-LSNLHFLLLRGNYLQGRI 211 (258)
Q Consensus 145 -~~~~L~~l~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~ 211 (258)
.+++|+.+++. + +.++.. ....+..+++|+.|++++ .++......+.. +++|+.|++++|.+++..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 34566666666 2 223311 111244566777777765 333222233333 788888999888876554
Q ss_pred Cccc-cCCCcccEEEccCceeecCCC-cccccccchhhhhhcccccC
Q 035481 212 PNQL-CQLRKLGIMDLSHNRLNGPIP-SCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 212 ~~~l-~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~ 256 (258)
+..+ ..+++|++|++++|.+++... .....+++|+.|++++|+++
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4444 568899999999998864333 24456889999999999874
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1e-17 Score=119.32 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=67.1
Q ss_pred CccceEEecCcccc-CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481 100 SGLWVLLMSENYLQ-GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 100 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 178 (258)
++|+.|++.+|.+. +.++..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 45666666665554 34444445555555555555555444 44445555555555555555434444444555555555
Q ss_pred cCCcccCCCC-hhhccCCCccEEEeeCCeecccCC---ccccCCCcccEEEccCceee
Q 035481 179 RDNKLFGRIP-HQINELSNLHFLLLRGNYLQGRIP---NQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~~~~~ 232 (258)
++|.++.... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555542211 344455555555555555543322 24445555555555555544
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.8e-17 Score=117.02 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=99.1
Q ss_pred CCCccEEEcccccce--eecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEE
Q 035481 123 LVCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFL 200 (258)
Q Consensus 123 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 200 (258)
.++|+.|++++|.+. .++..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888877 5666667778888888888887755 666777888888888888876567777778888888
Q ss_pred EeeCCeecccC-CccccCCCcccEEEccCceeecCCCc----ccccccchhhhhhcccccCC
Q 035481 201 LLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGPIPS----CLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 201 ~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~~~~----~~~~l~~L~~l~l~~~~~~~ 257 (258)
++++|.+.+.. +..+..+++|+.|++++|.+++ ++. .+..+++|+.|++.+|.++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888877532 2567778888888888888874 444 67788888888888887653
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.7e-20 Score=157.53 Aligned_cols=203 Identities=20% Similarity=0.133 Sum_probs=139.8
Q ss_pred cCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccce
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWV 104 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~ 104 (258)
..+++|+.|++++|.+. ..|..+..+++|+.|+++++......+.. +.. .......+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------l~~-----~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------MRA-----LDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HHH-----HCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------HHh-----cccccCCHHHHHHHHhccc
Confidence 45788999999999886 55777888899999998765311000000 000 0011122333334444444
Q ss_pred EE--------------ecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcC
Q 035481 105 LL--------------MSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRS 170 (258)
Q Consensus 105 l~--------------l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 170 (258)
|+ +.++.+... + ...|+.|++++|.+..++. +..+++|+.|++++|.++ .+|..+..+
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred Ccchhhcccchhhhhhhhccccccc-C-----ccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 43 333333211 1 1247888998888887765 788889999999999888 456788889
Q ss_pred CCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccC-CccccCCCcccEEEccCceeecCCCc---ccccccchh
Q 035481 171 STLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRI-PNQLCQLRKLGIMDLSHNRLNGPIPS---CLGNVSSWR 246 (258)
Q Consensus 171 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~l~l~~~~~~~~~~~---~~~~l~~L~ 246 (258)
++|+.|++++|.++. +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|+|++|.+++..+. .+..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 999999999999874 55 7888999999999999998766 88899999999999999999854332 123367777
Q ss_pred hhh
Q 035481 247 EVI 249 (258)
Q Consensus 247 ~l~ 249 (258)
.|+
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 664
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.7e-20 Score=157.67 Aligned_cols=192 Identities=19% Similarity=0.091 Sum_probs=131.8
Q ss_pred cCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccE
Q 035481 49 MNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEF 128 (258)
Q Consensus 49 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 128 (258)
..++.|+.|++++|.++ ..|..+..+.+|+.++++++......+. .+.. ....+..+..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~------ll~~-----~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL------LMRA-----LDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHHH-----HCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH------HHHh-----cccccCCHHHHHHHHhccc
Confidence 45778888888888876 5567777788888888765432101110 0111 1122345556666666766
Q ss_pred EE-cccccceeecC------CCC--CcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccE
Q 035481 129 ID-ISENSLSGSMV------SLS--NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHF 199 (258)
Q Consensus 129 L~-l~~~~~~~~~~------~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 199 (258)
|+ ++.+.+..... .+. ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred CcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 66 44443221110 000 113578888888888764 33 788888889999988887 67778888888999
Q ss_pred EEeeCCeecccCCccccCCCcccEEEccCceeecCC-CcccccccchhhhhhcccccCC
Q 035481 200 LLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPI-PSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 200 L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|++++|.+++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++
T Consensus 491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 9998888885 45 7888888889999988888654 7888888889999998888875
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.70 E-value=4.6e-20 Score=156.71 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=43.3
Q ss_pred cCCCCccEEECCCCccccccCcccc-CCcccceeecccc-ccccc-CCcccCCCCCccEEEccCccccCCCC----CcCC
Q 035481 25 SGCPSLETLDLSNNNFYGQLFPNYM-NLTHLRSLLLDNN-NFSGK-MTDGLLSSTLLEVLNVSNNKLSGDIP----HWIG 97 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~----~~l~ 97 (258)
..+++|++|++++|.++......+. .+++|++|++++| .++.. .+.....+++|++|++++|.++...+ ....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3456666666666655443333343 4566666666665 33211 11122245666666666665442221 1222
Q ss_pred CCCccceEEecCcc
Q 035481 98 NFSGLWVLLMSENY 111 (258)
Q Consensus 98 ~l~~L~~l~l~~~~ 111 (258)
.+++|+.|++.++.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 45566666665554
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=1e-16 Score=115.15 Aligned_cols=129 Identities=20% Similarity=0.180 Sum_probs=96.6
Q ss_pred cceEEecCccccCCcCccccCCCCccEEEcccccceeecCC-CCCcCCCcEEEeecccccccCccchhcCCCceEEEccC
Q 035481 102 LWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVS-LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRD 180 (258)
Q Consensus 102 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 180 (258)
.+.+++.++.+. .+|..+ .++|+.|++++|.+...+.. +..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 567777777776 334332 36788888888888765543 46778888888888888776666677888888888888
Q ss_pred CcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeec
Q 035481 181 NKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88876666667778888888888888876655566778888888888888774
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=115.92 Aligned_cols=127 Identities=25% Similarity=0.241 Sum_probs=99.0
Q ss_pred ceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCc
Q 035481 103 WVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK 182 (258)
Q Consensus 103 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 182 (258)
+.+++.++.++ .+|..+ .++++.|++++|.+..++..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 56777777776 445443 357888888888887777777778888888888888887777778888888888888888
Q ss_pred ccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 183 LFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 87777777888888888888888887666667778888888888888876
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=2.9e-17 Score=114.57 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=77.0
Q ss_pred CCccEEEcccccce--eecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEE
Q 035481 124 VCLEFIDISENSLS--GSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLL 201 (258)
Q Consensus 124 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 201 (258)
++++.|++++|.+. ..+..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 3444445555566666666655543 4455666677777777776655666666677777777
Q ss_pred eeCCeeccc-CCccccCCCcccEEEccCceeecCCC---cccccccchhhhhhc
Q 035481 202 LRGNYLQGR-IPNQLCQLRKLGIMDLSHNRLNGPIP---SCLGNVSSWREVIDD 251 (258)
Q Consensus 202 l~~~~l~~~-~~~~l~~~~~L~~l~l~~~~~~~~~~---~~~~~l~~L~~l~l~ 251 (258)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776642 23566677777777777777764333 356677777777665
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.8e-16 Score=113.01 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=97.5
Q ss_pred eEEecCcCccccccCcccccCCCCccEEECCCCccccccCc-cccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 6 ITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFP-NYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 6 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
+++++++++++ .+|..++ +++++|++++|.+....+. .|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 57888888887 7777653 3788888888888765553 37778888888888888876667777788888888888
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccce
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS 137 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 137 (258)
+|.+....+..+..+++|++|++.+|.+++..+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88887666666777888888888888877666777777777777777777654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1e-17 Score=144.75 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=84.1
Q ss_pred CcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCC
Q 035481 69 TDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSS 148 (258)
Q Consensus 69 ~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 148 (258)
+..+..+..|+.|++++|.+. .++..+..+++|+.|++.+|.++ .+|..+..+++|+.|++++|.+..++..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 444556666777777776665 45555556677777777777666 5566666667777777777776666666666677
Q ss_pred CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCC-CccEEEeeCCeecccCC
Q 035481 149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELS-NLHFLLLRGNYLQGRIP 212 (258)
Q Consensus 149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~ 212 (258)
|++|++++|.++. ++..+..+++|+.|+|++|.++...+..+.... ....+++++|.+.+.+|
T Consensus 295 L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 295 LKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 7777777776653 344466667777777777776655554443321 11224555555554444
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.4e-16 Score=111.06 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=87.6
Q ss_pred CccceEEecCcccc-CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEc
Q 035481 100 SGLWVLLMSENYLQ-GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDL 178 (258)
Q Consensus 100 ~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 178 (258)
++++.+++.+|.+. +..+..+..+++|+.|++++|.+... ..+..+++|+++++++|.+++..+..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45556666655554 34455555566666666666666555 45566677777777777776655666666788888888
Q ss_pred cCCcccCC-CChhhccCCCccEEEeeCCeecccCC---ccccCCCcccEEEccC
Q 035481 179 RDNKLFGR-IPHQINELSNLHFLLLRGNYLQGRIP---NQLCQLRKLGIMDLSH 228 (258)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~---~~l~~~~~L~~l~l~~ 228 (258)
++|.++.. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88887642 23667788888888888888876554 4677888888888763
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=111.22 Aligned_cols=126 Identities=27% Similarity=0.311 Sum_probs=105.9
Q ss_pred cEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeec-CCCCCcCCCcEEEeecc
Q 035481 79 EVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSM-VSLSNLSSVEHIYLHNN 157 (258)
Q Consensus 79 ~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~l~l~~~ 157 (258)
+.++++++.+. .+|..+ .++++.|++.+|.++ .++..+..+++|+.|++++|.+.... ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888877 555544 368999999999988 66678888999999999999998765 45778899999999999
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
.++...+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 998888888889999999999999998666667888999999999999875
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=1.3e-16 Score=114.47 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=92.0
Q ss_pred CCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceE
Q 035481 96 IGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLT 175 (258)
Q Consensus 96 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 175 (258)
+..+++|+.+++.+|.+.. ++......++|+.|++++|.+... ..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567788888888887773 343223334788888888877766 56677777888888888777665555577777888
Q ss_pred EEccCCcccCCCCh--hhccCCCccEEEeeCCeecccCCc----cccCCCcccEEEccCceee
Q 035481 176 LDLRDNKLFGRIPH--QINELSNLHFLLLRGNYLQGRIPN----QLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 176 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~----~l~~~~~L~~l~l~~~~~~ 232 (258)
|++++|.+. ..+. .+..+++|+.|++++|.+.+ .+. .+..+++|+.||+++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888877774 3333 56677777777777777763 343 3667777777777777654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=1.1e-16 Score=138.53 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=55.8
Q ss_pred cccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481 119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH 198 (258)
Q Consensus 119 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (258)
.+..+..|+.|++++|.+..++..+..++.|++|++++|.++ .++..+..+++|++|+|++|.++ .+|..+..+++|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 344444445555544444444433444445555555555444 33344444555555555555554 3344455555555
Q ss_pred EEEeeCCeecccCCccccCCCcccEEEccCceeecCCCccc
Q 035481 199 FLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCL 239 (258)
Q Consensus 199 ~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 239 (258)
+|+|++|.+. .+|..|..+++|+.|+|++|.+++.+|..+
T Consensus 297 ~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 297 YFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred EEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 5555555544 334445555555555555555544444443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=8.8e-15 Score=104.93 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=89.7
Q ss_pred ceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEcc
Q 035481 5 LITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVS 84 (258)
Q Consensus 5 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 84 (258)
.+.+++++++++ .+|... .++++.|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356777777777 666544 3678888888888776666667777888888888887775555556677777777777
Q ss_pred CccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccce
Q 035481 85 NNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLS 137 (258)
Q Consensus 85 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 137 (258)
+|.++...+..+..+++|+.+++.+|.+++..+..+..+++|+.|++++|.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 77777555555667777777777777776544444566677777777666553
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.8e-15 Score=108.44 Aligned_cols=130 Identities=17% Similarity=0.132 Sum_probs=62.8
Q ss_pred CCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCC-CCcCCCcEE
Q 035481 74 SSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSL-SNLSSVEHI 152 (258)
Q Consensus 74 ~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~l 152 (258)
.+.+|+.+++++|.+. .++......++|+.|++.+|.+.+. ..+..+++|+.|++++|.+...+..+ ..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555555554 2222222222555555555555432 34455555555555555555444333 445555555
Q ss_pred EeecccccccCc-cchhcCCCceEEEccCCcccCCCCh----hhccCCCccEEEeeCCee
Q 035481 153 YLHNNAINGLIP-IALLRSSTLLTLDLRDNKLFGRIPH----QINELSNLHFLLLRGNYL 207 (258)
Q Consensus 153 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l 207 (258)
++++|.+..... ..+..+++|+.|++++|.+.. .+. .+..+++|+.|++++|..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555543221 244455555555555555542 222 244555555555555544
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=7.6e-14 Score=112.68 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=126.3
Q ss_pred CCCcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc-----------------
Q 035481 1 EMKELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN----------------- 63 (258)
Q Consensus 1 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------- 63 (258)
+|.+|+.+.+..+ ++ .+...+|.+|.+|+.+++..+ +..+...+|.++..|+.+.+..+-
T Consensus 69 ~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccc
Confidence 3667777777643 66 677777888888888888654 444555666666666655443220
Q ss_pred ----ccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCccccCCC---------------
Q 035481 64 ----FSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLV--------------- 124 (258)
Q Consensus 64 ----~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~--------------- 124 (258)
.......+|..+.+|+.+.+..+... .....+..+.+|+.+.+..+ +.......+..+.
T Consensus 146 ~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 146 IPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred cCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence 01112234556667777776543222 33344555666666655432 1111111222222
Q ss_pred -------CccEEEcccccceeecCCCCCcCCCcEEEeeccccc--------------------ccCccchhcCCCceEEE
Q 035481 125 -------CLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAIN--------------------GLIPIALLRSSTLLTLD 177 (258)
Q Consensus 125 -------~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------~~~~~~~~~~~~L~~L~ 177 (258)
.|+.+.+......-....+..+..++.+.+..+... ......+..+.+|+.+.
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEE
T ss_pred hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccc
Confidence 233333221111101122334444554444333110 01223455566666666
Q ss_pred ccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481 178 LRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY 252 (258)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 252 (258)
+.++ +......+|.++++|+.+++..+ +......+|.+|.+|+.+++..+ ++.....+|.+|++|+.+.+..
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 6544 33344556677777777777544 44444566777777777777655 4433345677777777666643
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=2.4e-17 Score=120.52 Aligned_cols=110 Identities=21% Similarity=0.260 Sum_probs=51.1
Q ss_pred cCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCce
Q 035481 95 WIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLL 174 (258)
Q Consensus 95 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 174 (258)
.+..+++|+.|++.+|.+.+ ++ .+..+++|+.|++++|.+..++..+..+++|++|++++|.+++.. .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence 44455555555555555543 33 444455555555555555444333333445555555555444321 234444455
Q ss_pred EEEccCCcccCCCC-hhhccCCCccEEEeeCCeec
Q 035481 175 TLDLRDNKLFGRIP-HQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 175 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~ 208 (258)
+|++++|.+..... ..+..+++|++|++++|.+.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 55555544432111 23444444555555544443
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.6e-13 Score=110.77 Aligned_cols=220 Identities=15% Similarity=0.089 Sum_probs=137.9
Q ss_pred cCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccc----------
Q 035481 19 LSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKL---------- 88 (258)
Q Consensus 19 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~---------- 88 (258)
+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.....++..+..|+.+.+..+..
T Consensus 153 i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred cchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 34455666666666666543 22344555666666666665543 2223333444444444443332211
Q ss_pred -----------cCCCCCcCCCCCccceEEecCccccCCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecc
Q 035481 89 -----------SGDIPHWIGNFSGLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNN 157 (258)
Q Consensus 89 -----------~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~ 157 (258)
.......+..+..++.+.+..+... .....+..+..++.+......+. ...+..+.+|+.+.+..+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT
T ss_pred CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--cccccccccccccccccc
Confidence 1122234445556666665544332 33345556666666655443321 235667889999998765
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCc
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPS 237 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~ 237 (258)
+..+...+|.++.+|+.+++.++ ++.....+|.+|++|+.+.+..+ +......+|.+|.+|+.+++..+ ++ .+..
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~ 382 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRY 382 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhh
Confidence 55567788999999999999865 55567789999999999999877 55566789999999999999765 32 3456
Q ss_pred ccccccchhhh
Q 035481 238 CLGNVSSWREV 248 (258)
Q Consensus 238 ~~~~l~~L~~l 248 (258)
+|.++++|+.+
T Consensus 383 ~F~~c~~L~~I 393 (394)
T 4fs7_A 383 DFEDTTKFKWI 393 (394)
T ss_dssp GBCTTCEEEEE
T ss_pred eecCCCCCcEE
Confidence 78899988764
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.2e-14 Score=103.48 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=88.8
Q ss_pred ccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481 126 LEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205 (258)
Q Consensus 126 L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (258)
.+.++++++.+..++..+. +.+++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5788888888887776553 78899999999988877888888899999999999988777777788899999999999
Q ss_pred eecccCCccccCCCcccEEEccCceeec
Q 035481 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNG 233 (258)
Q Consensus 206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~ 233 (258)
++.+..+..+..+++|++|+|++|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 8887666678888999999999998873
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=4e-13 Score=108.45 Aligned_cols=78 Identities=13% Similarity=0.255 Sum_probs=43.8
Q ss_pred cceEEecCcCccccccCcccccCCCCccEEECCCC---ccccccCccccCCcccceeecccccccccCCcccCCCCCccE
Q 035481 4 ELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNN---NFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEV 80 (258)
Q Consensus 4 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (258)
.|+.+.+.+. ++ .+...+|.+|.+|+.+.+..+ .+..+...+|.++.+|+.+.+..+ ++.....++..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3666666543 55 667777777777777777643 244455566666666666555432 22233344444455555
Q ss_pred EEcc
Q 035481 81 LNVS 84 (258)
Q Consensus 81 l~l~ 84 (258)
+.+.
T Consensus 142 i~lp 145 (394)
T 4gt6_A 142 VTIP 145 (394)
T ss_dssp EECC
T ss_pred cccc
Confidence 5443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=5e-14 Score=100.22 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=82.1
Q ss_pred ccceEEecCccccCCcCccccCCCCccEEEcccccceee-cCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEcc
Q 035481 101 GLWVLLMSENYLQGSIPVQLGNLVCLEFIDISENSLSGS-MVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179 (258)
Q Consensus 101 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 179 (258)
..+.+++.++.++ .+|..+ .+.++.|++++|.+... +..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888877 455444 36788888888888776 4456778888888888888887777777888888888888
Q ss_pred CCcccCCCChhhccCCCccEEEeeCCeecc
Q 035481 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQG 209 (258)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 209 (258)
+|.+....+..+..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888876666678888888888888887763
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=6.1e-14 Score=100.14 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=55.4
Q ss_pred cEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCe
Q 035481 127 EFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNY 206 (258)
Q Consensus 127 ~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 206 (258)
+.++++++.+..++..+. +.++.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344444444444443332 455555555555555445555555555666666655554444444555566666666665
Q ss_pred ecccCCccccCCCcccEEEccCceee
Q 035481 207 LQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 207 l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
+.+..+..+..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55443444555556666666666554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=4.2e-14 Score=100.97 Aligned_cols=106 Identities=18% Similarity=0.174 Sum_probs=91.2
Q ss_pred CcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccC
Q 035481 149 VEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSH 228 (258)
Q Consensus 149 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~ 228 (258)
-+.++++++.++..+ ..+ .+++++|++++|.+....+..+..+++|++|++++|++.+..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP-~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVP-AGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccC-CCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999887554 333 38999999999999888888999999999999999999977667788999999999999
Q ss_pred ceeecCCCcccccccchhhhhhcccccCC
Q 035481 229 NRLNGPIPSCLGNVSSWREVIDDYSLLSG 257 (258)
Q Consensus 229 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 257 (258)
|.+++..+..|..+++|+.|++++|+++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99985444459999999999999999863
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.3e-16 Score=116.67 Aligned_cols=132 Identities=21% Similarity=0.227 Sum_probs=88.1
Q ss_pred cccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCcc
Q 035481 119 QLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLH 198 (258)
Q Consensus 119 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 198 (258)
.+..+++|+.|++++|.+..++ .+..+++|++|++++|.++. .+..+..+++|++|++++|.++. ++ .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 5666777777777777776655 66667777777777777763 34455556777777777777753 33 566677777
Q ss_pred EEEeeCCeecccCC-ccccCCCcccEEEccCceeecCCCc----------ccccccchhhhhhcccccC
Q 035481 199 FLLLRGNYLQGRIP-NQLCQLRKLGIMDLSHNRLNGPIPS----------CLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 199 ~L~l~~~~l~~~~~-~~l~~~~~L~~l~l~~~~~~~~~~~----------~~~~l~~L~~l~l~~~~~~ 256 (258)
+|++++|.+.+..+ ..+..+++|+++++++|.+.+..|. .+..+++|+.|+ +++++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777777764322 3566777777777777777654443 266677777654 66554
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=1.5e-11 Score=99.31 Aligned_cols=108 Identities=6% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCCeecccCCccccCCCccc
Q 035481 143 LSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLG 222 (258)
Q Consensus 143 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 222 (258)
+..+..|+.+.+..+.. .....++.+++.|+.+.+.. .++.....+|.+|++|+.+.+..+ ++.....+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 33455555555544322 24455666667777776653 334455677888999999999765 4445667899999999
Q ss_pred EEEccCceeecCCCcccccccchhhhhhcccc
Q 035481 223 IMDLSHNRLNGPIPSCLGNVSSWREVIDDYSL 254 (258)
Q Consensus 223 ~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 254 (258)
.+.+..+ ++.....+|.+|++|+.+.+.++.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 9999654 553445779999999999887764
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=2.6e-15 Score=119.98 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=114.5
Q ss_pred CCCccEEEccCccccCCCCC----cCC-CCCccceEEecCccccCCcCccc-cCCCCccEEEcccccceeec-----CCC
Q 035481 75 STLLEVLNVSNNKLSGDIPH----WIG-NFSGLWVLLMSENYLQGSIPVQL-GNLVCLEFIDISENSLSGSM-----VSL 143 (258)
Q Consensus 75 l~~L~~l~l~~~~~~~~~~~----~l~-~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-----~~~ 143 (258)
++.|+.+++++|.++..... .+. ..++|+.|++.+|.+.......+ ..+++|+.|++++|.+.+.. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999887632222 222 23689999999998764333222 23567899999999886521 112
Q ss_pred -CCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC----CChhhccCCCccEEEeeCCeecccC---
Q 035481 144 -SNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR----IPHQINELSNLHFLLLRGNYLQGRI--- 211 (258)
Q Consensus 144 -~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~--- 211 (258)
...+.|++|++++|.+++. +...+...++|++|++++|.+... ++..+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457899999999988653 334456788899999999988542 2445667789999999999887533
Q ss_pred -CccccCCCcccEEEccCceeecCCCccc
Q 035481 212 -PNQLCQLRKLGIMDLSHNRLNGPIPSCL 239 (258)
Q Consensus 212 -~~~l~~~~~L~~l~l~~~~~~~~~~~~~ 239 (258)
...+..+++|++|+|++|.+++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3445567889999999998874333333
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.36 E-value=1.3e-10 Score=93.21 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=131.7
Q ss_pred CcceEEecCcCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEE
Q 035481 3 KELITLDLSRNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLN 82 (258)
Q Consensus 3 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 82 (258)
.+|+.+.+... ++ .++..+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......++.. .+|+.+.
T Consensus 46 ~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEE
T ss_pred cCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccccc
Confidence 35677777543 66 788888999999999999754 666777778776 5666655433 33233344433 3566666
Q ss_pred ccCcccc---------------------CCCCCcCCCCCccceEEecCcccc----------------------------
Q 035481 83 VSNNKLS---------------------GDIPHWIGNFSGLWVLLMSENYLQ---------------------------- 113 (258)
Q Consensus 83 l~~~~~~---------------------~~~~~~l~~l~~L~~l~l~~~~~~---------------------------- 113 (258)
+..+-.. ......+..+..++.+.+......
T Consensus 120 lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 120 FPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred CCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 6442111 011122233344444333221100
Q ss_pred -------CCcCccccCCCCccEEEcccccceeecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCC
Q 035481 114 -------GSIPVQLGNLVCLEFIDISENSLSGSMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGR 186 (258)
Q Consensus 114 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 186 (258)
......+..+..++.+.+..+...-....+..+..|+.+.+..+ ++......+.++..++.+.+..+ +...
T Consensus 200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i 277 (379)
T 4h09_A 200 TIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV 277 (379)
T ss_dssp ECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE
T ss_pred ccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec
Confidence 00011122233444444433211112233445666666666554 33445556666677777766544 3334
Q ss_pred CChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhc
Q 035481 187 IPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDD 251 (258)
Q Consensus 187 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~ 251 (258)
...+|.++++|+.+.+.++.+......+|.+|.+|+.+.|..+ ++.....+|.+|++|+.+.+.
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 4556777777777777776666555667777777777777544 332334567777777777664
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.1e-14 Score=116.27 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=99.7
Q ss_pred CCccEEECCCCccccccCccccC-----CcccceeecccccccccCCcccC-CCCCccEEEccCccccCCCCCcC-----
Q 035481 28 PSLETLDLSNNNFYGQLFPNYMN-----LTHLRSLLLDNNNFSGKMTDGLL-SSTLLEVLNVSNNKLSGDIPHWI----- 96 (258)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~l----- 96 (258)
+.|+.|++++|.++......+.. .+.|++|++++|.++......+. .+.+|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666655333222221 24666666666665432222221 23456667776666542211111
Q ss_pred CCCCccceEEecCccccCC----cCccccCCCCccEEEcccccceee-----cCCCCCcCCCcEEEeeccccccc----C
Q 035481 97 GNFSGLWVLLMSENYLQGS----IPVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSSVEHIYLHNNAINGL----I 163 (258)
Q Consensus 97 ~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~----~ 163 (258)
...++|++|++.+|.+... ++..+..+++|++|++++|.+.+. ...+...++|++|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777776532 223345667788888888877542 23445566788888888887653 3
Q ss_pred ccchhcCCCceEEEccCCcccCCCChhhccC---C--CccEEE--eeCCeec
Q 035481 164 PIALLRSSTLLTLDLRDNKLFGRIPHQINEL---S--NLHFLL--LRGNYLQ 208 (258)
Q Consensus 164 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~l~ 208 (258)
...+...++|++|++++|.++......+... . .++.+. +.++.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3445566888899999888764433344332 1 156665 5555544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=3e-12 Score=101.57 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=81.2
Q ss_pred EEEcccc-cceeecCCCCCcCCCcEEEeec-ccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481 128 FIDISEN-SLSGSMVSLSNLSSVEHIYLHN-NAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205 (258)
Q Consensus 128 ~L~l~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (258)
.++++++ .+..++. +...++|+.|++++ |.+....+..+..+++|+.|+|++|.++...+.+|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777777 77778888888885 8888777777888888888888888887777778888888888888888
Q ss_pred eecccCCccccCCCcccEEEccCceee
Q 035481 206 YLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
++.+..+..+..++ |+.|+|++|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 88865555665554 888888888876
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=3.1e-11 Score=95.72 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=86.2
Q ss_pred ceEEecCc-cccCCcCccccCCCCccEEEccc-ccceeec-CCCCCcCCCcEEEeecccccccCccchhcCCCceEEEcc
Q 035481 103 WVLLMSEN-YLQGSIPVQLGNLVCLEFIDISE-NSLSGSM-VSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLR 179 (258)
Q Consensus 103 ~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 179 (258)
..+++.++ .++ .+|. +..+++|+.|++++ |.+...+ ..+..+++|+.|++++|.+++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45677776 777 5677 88889999999996 9998876 467889999999999999998888889999999999999
Q ss_pred CCcccCCCChhhccCCCccEEEeeCCeec
Q 035481 180 DNKLFGRIPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
+|.+....+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999866666666655 999999999876
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=1.7e-09 Score=86.74 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=142.6
Q ss_pred cccCCCCccEEECCCCccccccCccccCCcccceeecccccccccCCcccCCCCCccEEEccCccccCCCCCcCCCCCcc
Q 035481 23 IFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNFSGKMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGL 102 (258)
Q Consensus 23 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L 102 (258)
+|....+|+.+.+.. .++.+...+|.+|.+|+.+.+..+ ++.....+|..+ +|+.+.+..+ +.......+.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 456667899999975 577788899999999999999754 555666777766 6877777543 33233334433 467
Q ss_pred ceEEecCcccc---------------------CCcCccccCCCCccEEEccccccee-----------------------
Q 035481 103 WVLLMSENYLQ---------------------GSIPVQLGNLVCLEFIDISENSLSG----------------------- 138 (258)
Q Consensus 103 ~~l~l~~~~~~---------------------~~~~~~~~~~~~L~~L~l~~~~~~~----------------------- 138 (258)
+.+.+..+-.. ......+..+..++.+.+.......
T Consensus 116 ~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (379)
T 4h09_A 116 DDFEFPGATTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKT 195 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCC
T ss_pred ccccCCCccccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccc
Confidence 77777543111 0111233344455544443221100
Q ss_pred -------------ecCCCCCcCCCcEEEeecccccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481 139 -------------SMVSLSNLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205 (258)
Q Consensus 139 -------------~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (258)
....+..+..++.+.+..+ +.......+.++..|+.+.+..+ ++.....++..+.+|+.+.+..+
T Consensus 196 ~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~ 273 (379)
T 4h09_A 196 GTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK 273 (379)
T ss_dssp CSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC
T ss_pred ccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc
Confidence 0011223445555555433 23344566777888888888766 44466678888899999998765
Q ss_pred eecccCCccccCCCcccEEEccCceeecCCCcccccccchhhhhhcc
Q 035481 206 YLQGRIPNQLCQLRKLGIMDLSHNRLNGPIPSCLGNVSSWREVIDDY 252 (258)
Q Consensus 206 ~l~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 252 (258)
+......+|..|.+|+.+.+.++.++.....+|.+|++|+.+.+..
T Consensus 274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 4445567889999999999998887744467899999999988854
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=1.3e-11 Score=97.94 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCCccEEEeeCCeecccCCcccc---CCCcccEEEccCceeecC----CCcccccccchhhhhhcccccC
Q 035481 194 LSNLHFLLLRGNYLQGRIPNQLC---QLRKLGIMDLSHNRLNGP----IPSCLGNVSSWREVIDDYSLLS 256 (258)
Q Consensus 194 ~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~ 256 (258)
+|+|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45555555555554422211111 244555555555555431 2233344455555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.9e-10 Score=91.20 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=95.0
Q ss_pred cCCcccceeecccccccc---------cCCcccCCCCCccEEEccCccccCCCCCcCCCCCccceEEecCccccCCcCcc
Q 035481 49 MNLTHLRSLLLDNNNFSG---------KMTDGLLSSTLLEVLNVSNNKLSGDIPHWIGNFSGLWVLLMSENYLQGSIPVQ 119 (258)
Q Consensus 49 ~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 119 (258)
..+++|+.|.+....... .....+..+++|+.|.+.++.-. ..+. + .+++|+.|.+..+.+.......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 345677777665432110 11123445677888888665311 1222 2 2677888888766654332222
Q ss_pred cc--CCCCccEEEcccc--c------ceeecCCC--CCcCCCcEEEeecccccccCccch---hcCCCceEEEccCCccc
Q 035481 120 LG--NLVCLEFIDISEN--S------LSGSMVSL--SNLSSVEHIYLHNNAINGLIPIAL---LRSSTLLTLDLRDNKLF 184 (258)
Q Consensus 120 ~~--~~~~L~~L~l~~~--~------~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 184 (258)
+. .+++|+.|+++.+ . +..+...+ ..+++|++|++.+|.+.+.....+ ..+++|++|+++.|.+.
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 32 5677888777431 1 11111112 246778888887777654322222 23567778888777765
Q ss_pred CCC----ChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCce
Q 035481 185 GRI----PHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNR 230 (258)
Q Consensus 185 ~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~ 230 (258)
... +..+..+++|+.|++++|.+++.....+...- ..++++++++
T Consensus 293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 293 DEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred hHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 322 22234567777777777776654444444311 2356666655
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.83 E-value=2.9e-10 Score=79.97 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=65.6
Q ss_pred CcCCCcEEEeecccccccCccchhcCCCceEEEccCCc-ccCCCChhhcc----CCCccEEEeeCC-eecccCCccccCC
Q 035481 145 NLSSVEHIYLHNNAINGLIPIALLRSSTLLTLDLRDNK-LFGRIPHQINE----LSNLHFLLLRGN-YLQGRIPNQLCQL 218 (258)
Q Consensus 145 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~l~~~~~~~l~~~ 218 (258)
....|++|++++|.+++.....+..+++|++|+|++|. +++.....+.. +++|++|++++| ++++.....+.++
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 34578999999998887766777888999999999986 44333334444 247899999998 5777666677788
Q ss_pred CcccEEEccCce
Q 035481 219 RKLGIMDLSHNR 230 (258)
Q Consensus 219 ~~L~~l~l~~~~ 230 (258)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999886
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=2.3e-10 Score=82.29 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=79.2
Q ss_pred ccccCCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC-
Q 035481 118 VQLGNLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR- 186 (258)
Q Consensus 118 ~~~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~- 186 (258)
..+...+.|+.|++++| .+.. +...+...++|++|++++|.+.+. +...+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788888888888 7754 233445667888888888887643 334455667888888888887532
Q ss_pred ---CChhhccCCCccEEEe--eCCeecccC----CccccCCCcccEEEccCceee
Q 035481 187 ---IPHQINELSNLHFLLL--RGNYLQGRI----PNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 187 ---~~~~~~~~~~L~~L~l--~~~~l~~~~----~~~l~~~~~L~~l~l~~~~~~ 232 (258)
+..++...+.|++|++ ++|.+.+.. ...+...+.|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3345566778888888 778776532 344555678888888888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.72 E-value=3.8e-09 Score=74.31 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=55.3
Q ss_pred CCccEEEccccccee-ecCCCCCcCCCcEEEeeccc-ccccCccchhcC----CCceEEEccCCc-ccCCCChhhccCCC
Q 035481 124 VCLEFIDISENSLSG-SMVSLSNLSSVEHIYLHNNA-INGLIPIALLRS----STLLTLDLRDNK-LFGRIPHQINELSN 196 (258)
Q Consensus 124 ~~L~~L~l~~~~~~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 196 (258)
..|+.||++++.+++ ....+..+++|++|++++|. +++..-..+... ++|++|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467788888777654 23445677788888888874 555444444442 467888888875 55444445667788
Q ss_pred ccEEEeeCCe-ec
Q 035481 197 LHFLLLRGNY-LQ 208 (258)
Q Consensus 197 L~~L~l~~~~-l~ 208 (258)
|+.|++++|. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888873 44
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.71 E-value=1.9e-09 Score=77.53 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCCCccceEEecCc-cccCC----cCccccCCCCccEEEccccccee-----ecCCCCCcCCCcEEEeeccccccc----
Q 035481 97 GNFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSG-----SMVSLSNLSSVEHIYLHNNAINGL---- 162 (258)
Q Consensus 97 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~---- 162 (258)
...+.|++|++.+| .+... +...+...+.|+.|++++|.+.+ +...+...+.|++|++++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34455555555555 44321 12233344555555555555532 111222334555555555555432
Q ss_pred CccchhcCCCceEEEc--cCCcccCC----CChhhccCCCccEEEeeCCeec
Q 035481 163 IPIALLRSSTLLTLDL--RDNKLFGR----IPHQINELSNLHFLLLRGNYLQ 208 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~ 208 (258)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333444455555555 44554321 1223333455555555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=1.3e-08 Score=76.85 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=57.4
Q ss_pred hcCCCceEEEccCCcccC--CCChhhccCCCccEEEeeCCeecccCCccccCCC--cccEEEccCceeecCCCc------
Q 035481 168 LRSSTLLTLDLRDNKLFG--RIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLR--KLGIMDLSHNRLNGPIPS------ 237 (258)
Q Consensus 168 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~--~L~~l~l~~~~~~~~~~~------ 237 (258)
..+++|+.|+|++|.++. .++..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 467889999999998875 3345667888999999999988754 2333333 889999999988765542
Q ss_pred -ccccccchhhhh
Q 035481 238 -CLGNVSSWREVI 249 (258)
Q Consensus 238 -~~~~l~~L~~l~ 249 (258)
.+..+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677776554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=4.5e-07 Score=68.49 Aligned_cols=81 Identities=26% Similarity=0.259 Sum_probs=54.7
Q ss_pred cCCCCccEEECCCCcccccc--CccccCCcccceeeccccccccc-CCcccCCCCCccEEEccCccccCCCC-------C
Q 035481 25 SGCPSLETLDLSNNNFYGQL--FPNYMNLTHLRSLLLDNNNFSGK-MTDGLLSSTLLEVLNVSNNKLSGDIP-------H 94 (258)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~-------~ 94 (258)
.++++|+.|+|++|.+..+. +..+..+++|+.|++++|.+... ....+..+ +|++|++.+|.+....+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 45788888888888887532 23445788888888888888643 11223333 78888888888764333 1
Q ss_pred cCCCCCccceEE
Q 035481 95 WIGNFSGLWVLL 106 (258)
Q Consensus 95 ~l~~l~~L~~l~ 106 (258)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345678888775
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=5.6e-06 Score=59.33 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=72.4
Q ss_pred ccCCCCccEEEcccc-ccee-----ecCCCCCcCCCcEEEeeccccccc----CccchhcCCCceEEEccCCcccCC---
Q 035481 120 LGNLVCLEFIDISEN-SLSG-----SMVSLSNLSSVEHIYLHNNAINGL----IPIALLRSSTLLTLDLRDNKLFGR--- 186 (258)
Q Consensus 120 ~~~~~~L~~L~l~~~-~~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 186 (258)
+..-+.|+.|+++.+ .+.+ +...+..-+.|+.|++++|.+.+. +...+..-+.|++|+|+.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567888888875 6643 233445667888888888887654 334455567888888888887532
Q ss_pred -CChhhccCCCccEEEeeCCe---ecc----cCCccccCCCcccEEEccCcee
Q 035481 187 -IPHQINELSNLHFLLLRGNY---LQG----RIPNQLCQLRKLGIMDLSHNRL 231 (258)
Q Consensus 187 -~~~~~~~~~~L~~L~l~~~~---l~~----~~~~~l~~~~~L~~l~l~~~~~ 231 (258)
+..++...+.|++|++++|. +.+ .+...+..-+.|.+|+++.+.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23345556778888887652 332 2334555567788888877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=2.4e-05 Score=56.01 Aligned_cols=110 Identities=10% Similarity=0.066 Sum_probs=57.5
Q ss_pred CCCCccceEEecCc-cccCC----cCccccCCCCccEEEcccccceee-----cCCCCCcCCCcEEEeeccccccc----
Q 035481 97 GNFSGLWVLLMSEN-YLQGS----IPVQLGNLVCLEFIDISENSLSGS-----MVSLSNLSSVEHIYLHNNAINGL---- 162 (258)
Q Consensus 97 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~l~l~~~~~~~~---- 162 (258)
.+-+.|+.|++.++ .+... +.+.+..-+.|+.|+++.|.+.+. ...+..-+.|++|++++|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456667777654 44311 223344456677777777766541 12223445677777777766543
Q ss_pred CccchhcCCCceEEEccCCcc---cC----CCChhhccCCCccEEEeeCCe
Q 035481 163 IPIALLRSSTLLTLDLRDNKL---FG----RIPHQINELSNLHFLLLRGNY 206 (258)
Q Consensus 163 ~~~~~~~~~~L~~L~l~~~~~---~~----~~~~~~~~~~~L~~L~l~~~~ 206 (258)
+.+.+..-+.|++|+|+++.. .. .+..++...+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233444445677777765422 11 122344455666777666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00036 Score=46.58 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=43.8
Q ss_pred eEEEccCCccc-CCCChhhccCCCccEEEeeCCeecccCCccccCCCcccEEEccCceee
Q 035481 174 LTLDLRDNKLF-GRIPHQINELSNLHFLLLRGNYLQGRIPNQLCQLRKLGIMDLSHNRLN 232 (258)
Q Consensus 174 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~l~l~~~~~~ 232 (258)
..++.++..++ ..+|..+ .++++.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888775 2444322 247999999999998777778888999999999999886
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.0015 Score=43.52 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=30.5
Q ss_pred EEecCcCccc-cccCcccccCCCCccEEECCCCccccccCccccCCcccceeecccccc
Q 035481 7 TLDLSRNNFS-GELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNNF 64 (258)
Q Consensus 7 ~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 64 (258)
.++.++++++ ..+|..+ .++++.|+|++|.++.+....|..+++|++|+|.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3455555553 1344332 23466666666666655555566666666666666544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.58 E-value=0.12 Score=32.42 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=38.2
Q ss_pred cCccccccCcccccCCCCccEEECCCCccccccCccccCCcccceeeccccc
Q 035481 12 RNNFSGELSRPIFSGCPSLETLDLSNNNFYGQLFPNYMNLTHLRSLLLDNNN 63 (258)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 63 (258)
+..++ .+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+....
T Consensus 5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 34566 677888888888888888764 555777888888888888887643
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.93 E-value=0.67 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=29.7
Q ss_pred cccccCccchhcCCCceEEEccCCcccCCCChhhccCCCccEEEeeCC
Q 035481 158 AINGLIPIALLRSSTLLTLDLRDNKLFGRIPHQINELSNLHFLLLRGN 205 (258)
Q Consensus 158 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (258)
.++.+...+|.+|.+|+.+.+..+- +.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3444555667777777777766653 3455566777777777776553
Done!