BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035482
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YL2|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
pdb|2YL2|B Chain B, Crystal Structure Of Human Acetyl-Coa Carboxylase 1,
Biotin Carboxylase (Bc) Domain
Length = 540
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSL 43
Y E++LDI R+PV + V W + ++NP LP L
Sbjct: 110 YANVELILDIAKRIPVQA------VWAGWGHASENPKLPEL 144
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 8 IVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKND 52
I +ILS L SL +LVCK W + +L RM + D
Sbjct: 22 IAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTD 66
>pdb|3GID|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GID|B Chain B, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2) In Complex With Soraphen A
pdb|3GLK|A Chain A, The Biotin Carboxylase (Bc) Domain Of Human Acetyl-Coa
Carboxylase 2 (Acc2)
Length = 540
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYP 62
Y E+++DI R+PV + V W + ++NP LP L + KN + P
Sbjct: 109 YANVELIVDIAKRIPVQA------VWAGWGHASENPKLPEL----LCKNGVAFL----GP 154
Query: 63 IRNQLYSFELSSRDEDNQTVHQIRVPALP 91
+++ L + ++VP LP
Sbjct: 155 PSEAMWA--LGDKIASTVVAQTLQVPTLP 181
>pdb|2HJW|A Chain A, Crystal Structure Of The Bc Domain Of Acc2
Length = 573
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYP 62
Y E+++DI R+PV + V W + ++NP LP L + KN + P
Sbjct: 119 YANVELIVDIAKRIPVQA------VWAGWGHASENPKLPEL----LCKNGVAFL----GP 164
Query: 63 IRNQLYSFELSSRDEDNQTVHQIRVPALP 91
+++ L + ++VP LP
Sbjct: 165 PSEAMWA--LGDKIASTVVAQTLQVPTLP 191
>pdb|3JRX|A Chain A, Crystal Structure Of The Bc Domain Of Acc2 In Complex With
Soraphen A
Length = 587
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYP 62
Y E+++DI R+PV + V W + ++NP LP L + KN + P
Sbjct: 125 YANVELIVDIAKRIPVQA------VWAGWGHASENPKLPEL----LCKNGVAFL----GP 170
Query: 63 IRNQLYSFELSSRDEDNQTVHQIRVPALP 91
+++ L + ++VP LP
Sbjct: 171 PSEAMWA--LGDKIASTVVAQTLQVPTLP 197
>pdb|3JRW|A Chain A, Phosphorylated Bc Domain Of Acc2
Length = 587
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYP 62
Y E+++DI R+PV + V W + ++NP LP L + KN + P
Sbjct: 125 YANVELIVDIAKRIPVQA------VWAGWGHASENPKLPEL----LCKNGVAFL----GP 170
Query: 63 IRNQLYSFELSSRDEDNQTVHQIRVPALP 91
+++ L + ++VP LP
Sbjct: 171 PSEAMWA--LGDKIASTVVAQTLQVPTLP 197
>pdb|3U44|B Chain B, Crystal Structure Of Addab-Dna Complex
pdb|3U4Q|B Chain B, Structure Of Addab-Dna Complex At 2.8 Angstroms
Length = 1166
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 30/126 (23%)
Query: 211 HWCTWPRYRGPS-RLLISFDIADEQFR------VVEKPDELHRIHYD--LVNLGGCLS-- 259
H+ + + PS RL +S+ IAD + + +V++ +EL H + L N +S
Sbjct: 651 HFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDE 710
Query: 260 -----------AAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFR--D 306
A +S +W +EYD+ + W YN+ + EQD QS +
Sbjct: 711 EQLMYVVNKSVAQSFTASQLRLWT-REYDISDVWWSTYNVLMS-----EQDRLQSKKLFS 764
Query: 307 SKFFRN 312
S FFRN
Sbjct: 765 SLFFRN 770
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,211,058
Number of Sequences: 62578
Number of extensions: 523888
Number of successful extensions: 1002
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 994
Number of HSP's gapped (non-prelim): 13
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)