Query 035482
Match_columns 378
No_of_seqs 164 out of 1733
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:15:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.5E-35 3.3E-40 260.4 26.3 220 96-344 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 7.5E-16 1.6E-20 127.6 18.0 149 203-366 1-164 (164)
3 PF08268 FBA_3: F-box associat 99.7 1.9E-15 4E-20 120.0 14.3 112 203-330 1-118 (129)
4 PLN03215 ascorbic acid mannose 99.5 4.1E-11 9E-16 109.5 25.0 303 2-350 5-354 (373)
5 PHA02713 hypothetical protein; 99.2 6.2E-09 1.4E-13 102.8 22.7 215 96-352 299-543 (557)
6 KOG4441 Proteins containing BT 99.1 1.6E-08 3.5E-13 99.7 21.2 214 95-350 327-554 (571)
7 PHA03098 kelch-like protein; P 98.9 2.4E-07 5.2E-12 91.8 22.7 210 97-350 291-519 (534)
8 PF12937 F-box-like: F-box-lik 98.9 4.2E-10 9E-15 72.1 2.0 40 1-40 1-40 (47)
9 PHA02713 hypothetical protein; 98.9 1.6E-07 3.4E-12 92.9 20.8 134 113-264 273-407 (557)
10 KOG4441 Proteins containing BT 98.9 1.7E-07 3.6E-12 92.6 20.5 212 98-350 282-507 (571)
11 PLN02153 epithiospecifier prot 98.9 1.7E-06 3.8E-11 80.6 24.9 222 96-353 28-295 (341)
12 PLN02193 nitrile-specifier pro 98.9 1.5E-06 3.3E-11 84.3 25.2 203 112-351 193-419 (470)
13 PHA02790 Kelch-like protein; P 98.9 7.5E-07 1.6E-11 86.7 22.4 199 98-349 269-477 (480)
14 TIGR03547 muta_rot_YjhT mutatr 98.8 3.9E-06 8.5E-11 78.4 24.7 182 96-288 13-237 (346)
15 TIGR03548 mutarot_permut cycli 98.7 7E-06 1.5E-10 75.9 24.3 155 113-287 40-203 (323)
16 PRK14131 N-acetylneuraminic ac 98.7 7.6E-06 1.6E-10 77.3 24.0 182 96-288 34-258 (376)
17 smart00256 FBOX A Receptor for 98.7 5E-09 1.1E-13 65.0 1.0 39 4-42 1-39 (41)
18 PF00646 F-box: F-box domain; 98.6 1.5E-09 3.2E-14 69.9 -2.4 41 2-42 4-44 (48)
19 PHA02790 Kelch-like protein; P 98.6 3.7E-06 7.9E-11 81.9 17.9 141 96-265 314-456 (480)
20 PLN02193 nitrile-specifier pro 98.5 3.8E-05 8.3E-10 74.6 23.9 204 113-352 138-361 (470)
21 PHA03098 kelch-like protein; P 98.5 7.8E-06 1.7E-10 81.1 19.2 172 96-287 338-520 (534)
22 PLN02153 epithiospecifier prot 98.4 0.00012 2.5E-09 68.3 23.2 110 175-286 50-175 (341)
23 TIGR03548 mutarot_permut cycli 98.4 3.7E-05 8E-10 71.1 19.1 152 96-264 119-312 (323)
24 PRK14131 N-acetylneuraminic ac 98.4 0.00044 9.4E-09 65.4 26.1 90 175-264 189-288 (376)
25 TIGR03547 muta_rot_YjhT mutatr 98.2 0.0011 2.3E-08 62.0 23.5 90 175-264 168-266 (346)
26 KOG4693 Uncharacterized conser 97.7 0.0013 2.9E-08 56.7 13.9 212 111-354 43-288 (392)
27 KOG1230 Protein containing rep 97.7 0.00069 1.5E-08 61.9 11.7 225 112-354 98-352 (521)
28 KOG0379 Kelch repeat-containin 97.4 0.02 4.2E-07 55.9 19.1 204 113-353 89-312 (482)
29 KOG0281 Beta-TrCP (transducin 97.3 0.001 2.2E-08 59.4 8.1 39 2-40 76-118 (499)
30 KOG4693 Uncharacterized conser 97.3 0.004 8.7E-08 53.8 10.8 111 175-287 157-285 (392)
31 KOG2120 SCF ubiquitin ligase, 97.1 0.00019 4.1E-09 63.2 1.1 39 2-40 99-137 (419)
32 KOG0379 Kelch repeat-containin 97.1 0.088 1.9E-06 51.4 19.3 160 112-289 139-312 (482)
33 KOG1230 Protein containing rep 96.4 0.18 3.8E-06 46.7 14.7 111 175-287 98-224 (521)
34 KOG2997 F-box protein FBX9 [Ge 96.1 0.0013 2.9E-08 58.1 -0.3 44 1-44 107-155 (366)
35 PF13964 Kelch_6: Kelch motif 96.0 0.02 4.2E-07 36.7 4.8 39 201-239 5-44 (50)
36 COG4257 Vgb Streptogramin lyas 94.8 0.79 1.7E-05 40.4 12.1 125 93-243 192-317 (353)
37 PF01344 Kelch_1: Kelch motif; 94.6 0.087 1.9E-06 33.0 4.6 39 201-239 5-44 (47)
38 PF13964 Kelch_6: Kelch motif 94.1 0.16 3.4E-06 32.4 4.9 37 96-132 7-48 (50)
39 PF07646 Kelch_2: Kelch motif; 94.0 0.19 4E-06 31.9 5.2 40 201-240 5-47 (49)
40 PF13360 PQQ_2: PQQ-like domai 92.2 7 0.00015 33.7 17.6 103 99-235 35-144 (238)
41 PLN02772 guanylate kinase 91.4 1.5 3.3E-05 41.1 9.3 76 199-275 26-107 (398)
42 PF02191 OLF: Olfactomedin-lik 91.3 9.8 0.00021 33.6 14.8 39 199-242 70-109 (250)
43 PF07762 DUF1618: Protein of u 89.9 2.4 5.3E-05 33.2 8.1 69 223-291 6-99 (131)
44 PF07893 DUF1668: Protein of u 89.8 7.4 0.00016 36.2 12.5 83 176-263 200-296 (342)
45 PF07250 Glyoxal_oxid_N: Glyox 89.7 11 0.00023 33.2 12.5 173 175-371 46-225 (243)
46 PF01344 Kelch_1: Kelch motif; 89.3 0.98 2.1E-05 28.0 4.4 21 174-194 27-47 (47)
47 PF08450 SGL: SMP-30/Gluconola 88.8 15 0.00033 32.0 24.9 207 97-352 8-223 (246)
48 PRK11138 outer membrane biogen 87.9 25 0.00054 33.4 19.2 108 201-348 250-359 (394)
49 PF13418 Kelch_4: Galactose ox 87.7 0.91 2E-05 28.5 3.6 38 202-239 6-45 (49)
50 PF07893 DUF1668: Protein of u 87.7 13 0.00028 34.6 12.6 119 111-242 85-221 (342)
51 smart00612 Kelch Kelch domain. 86.9 1.2 2.6E-05 27.3 3.7 22 175-196 15-36 (47)
52 smart00612 Kelch Kelch domain. 86.6 2.1 4.6E-05 26.1 4.8 18 222-239 14-31 (47)
53 PRK11138 outer membrane biogen 84.7 36 0.00079 32.2 20.5 187 98-346 118-316 (394)
54 KOG4341 F-box protein containi 83.8 0.42 9E-06 44.7 0.6 36 3-38 74-109 (483)
55 PF10282 Lactonase: Lactonase, 82.9 40 0.00087 31.3 15.4 122 207-351 154-286 (345)
56 TIGR03074 PQQ_membr_DH membran 82.2 56 0.0012 34.1 15.1 33 199-237 186-220 (764)
57 COG4257 Vgb Streptogramin lyas 82.1 37 0.00081 30.3 16.4 221 98-352 70-315 (353)
58 PF13418 Kelch_4: Galactose ox 82.0 2.2 4.8E-05 26.7 3.4 20 175-194 29-48 (49)
59 KOG0274 Cdc4 and related F-box 81.9 0.4 8.7E-06 47.3 -0.2 42 1-42 108-149 (537)
60 KOG4152 Host cell transcriptio 80.6 21 0.00045 34.6 10.3 90 112-216 57-155 (830)
61 PF13415 Kelch_3: Galactose ox 80.2 6.5 0.00014 24.6 5.1 32 207-238 1-34 (49)
62 COG2706 3-carboxymuconate cycl 78.8 54 0.0012 30.2 15.1 113 222-352 166-286 (346)
63 smart00284 OLF Olfactomedin-li 78.0 49 0.0011 29.3 15.4 64 199-267 75-149 (255)
64 TIGR03300 assembly_YfgL outer 77.3 64 0.0014 30.2 21.4 56 175-236 155-215 (377)
65 PF13570 PQQ_3: PQQ-like domai 76.8 5.1 0.00011 23.8 3.7 26 201-232 15-40 (40)
66 PF06433 Me-amine-dh_H: Methyl 75.8 67 0.0015 29.7 12.2 115 202-348 188-326 (342)
67 TIGR03300 assembly_YfgL outer 74.3 77 0.0017 29.7 17.0 133 176-348 201-344 (377)
68 smart00564 PQQ beta-propeller 73.8 9 0.00019 21.4 4.0 25 324-348 6-30 (33)
69 PF02897 Peptidase_S9_N: Proly 73.7 84 0.0018 29.9 20.2 148 175-350 252-412 (414)
70 PF08450 SGL: SMP-30/Gluconola 72.6 65 0.0014 28.0 15.9 31 207-242 11-41 (246)
71 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.5 97 0.0021 30.8 13.4 32 200-237 62-95 (527)
72 PF13415 Kelch_3: Galactose ox 72.5 6.1 0.00013 24.7 3.4 23 112-134 19-41 (49)
73 COG3055 Uncharacterized protei 71.6 18 0.00038 33.4 7.1 69 175-243 58-135 (381)
74 PF13360 PQQ_2: PQQ-like domai 70.4 68 0.0015 27.4 17.7 142 175-350 3-148 (238)
75 KOG2055 WD40 repeat protein [G 69.2 96 0.0021 29.7 11.4 101 222-350 279-382 (514)
76 PF07646 Kelch_2: Kelch motif; 68.9 8.8 0.00019 24.0 3.5 20 174-193 29-48 (49)
77 PF02239 Cytochrom_D1: Cytochr 68.4 1.1E+02 0.0023 28.9 19.1 188 110-349 14-209 (369)
78 PF13859 BNR_3: BNR repeat-lik 66.8 46 0.001 30.5 9.0 84 199-285 122-212 (310)
79 KOG0310 Conserved WD40 repeat- 65.6 1.3E+02 0.0029 28.9 13.3 170 118-345 8-187 (487)
80 TIGR01640 F_box_assoc_1 F-box 64.5 93 0.002 26.8 13.9 31 205-242 3-33 (230)
81 PF05096 Glu_cyclase_2: Glutam 63.8 1.1E+02 0.0024 27.3 15.4 144 173-350 66-211 (264)
82 COG3055 Uncharacterized protei 62.9 29 0.00063 32.1 6.7 114 175-290 113-267 (381)
83 PF01011 PQQ: PQQ enzyme repea 62.5 13 0.00028 21.9 3.2 24 327-350 3-26 (38)
84 COG1520 FOG: WD40-like repeat 61.4 1.4E+02 0.0031 27.9 13.9 111 203-349 64-178 (370)
85 KOG0316 Conserved WD40 repeat- 60.2 1.2E+02 0.0026 26.6 11.2 111 99-242 27-142 (307)
86 PF03088 Str_synth: Strictosid 60.2 19 0.00042 26.1 4.3 18 333-350 36-53 (89)
87 KOG4152 Host cell transcriptio 59.9 1.1E+02 0.0024 29.9 10.2 100 176-275 231-362 (830)
88 PRK11028 6-phosphogluconolacto 59.7 1.4E+02 0.003 27.2 14.5 94 175-277 12-113 (330)
89 COG4946 Uncharacterized protei 59.6 1.2E+02 0.0027 29.3 10.3 32 321-352 274-305 (668)
90 cd01206 Homer Homer type EVH1 56.5 36 0.00078 25.6 5.1 40 112-157 11-51 (111)
91 cd00216 PQQ_DH Dehydrogenases 56.0 1.5E+02 0.0033 29.0 11.2 32 200-237 54-87 (488)
92 PF08268 FBA_3: F-box associat 51.7 62 0.0013 25.0 6.3 39 333-371 19-61 (129)
93 PF13013 F-box-like_2: F-box-l 51.1 7.1 0.00015 29.5 0.8 28 2-29 23-50 (109)
94 cd01207 Ena-Vasp Enabled-VASP- 50.5 43 0.00093 25.4 4.9 43 112-157 9-51 (111)
95 PF10282 Lactonase: Lactonase, 49.0 2.2E+02 0.0048 26.3 29.1 148 175-350 166-332 (345)
96 KOG2502 Tub family proteins [G 48.0 13 0.00027 34.1 2.0 36 2-37 46-89 (355)
97 KOG0289 mRNA splicing factor [ 47.9 2.6E+02 0.0056 26.8 12.0 113 204-350 355-470 (506)
98 KOG0647 mRNA export protein (c 44.5 2.2E+02 0.0047 25.9 8.9 36 317-352 76-112 (347)
99 PF12768 Rax2: Cortical protei 42.2 78 0.0017 28.6 6.1 63 173-240 14-81 (281)
100 COG3386 Gluconolactonase [Carb 42.0 2.8E+02 0.006 25.4 11.7 31 208-243 37-67 (307)
101 KOG3545 Olfactomedin and relat 39.5 1.3E+02 0.0027 26.5 6.7 79 184-268 55-144 (249)
102 PF06058 DCP1: Dcp1-like decap 38.0 55 0.0012 25.3 4.0 30 327-356 22-51 (122)
103 PF15408 PH_7: Pleckstrin homo 37.9 11 0.00023 26.8 -0.0 25 18-42 76-100 (104)
104 cd00260 Sialidase Sialidases o 34.5 3.7E+02 0.008 24.7 10.3 86 201-288 149-241 (351)
105 KOG0649 WD40 repeat protein [G 34.4 1.5E+02 0.0033 26.1 6.3 33 323-356 125-157 (325)
106 PF14339 DUF4394: Domain of un 33.7 1.4E+02 0.0031 26.0 6.2 55 98-155 36-92 (236)
107 COG2706 3-carboxymuconate cycl 33.5 4E+02 0.0086 24.8 27.2 147 175-350 167-331 (346)
108 KOG0315 G-protein beta subunit 29.8 4E+02 0.0087 23.7 11.8 144 175-350 146-296 (311)
109 PF00568 WH1: WH1 domain; Int 29.5 2E+02 0.0044 21.6 5.8 39 112-157 16-55 (111)
110 PF15525 DUF4652: Domain of un 29.4 2.5E+02 0.0053 23.7 6.5 45 333-377 139-185 (200)
111 PF13854 Kelch_5: Kelch motif 28.1 1.2E+02 0.0026 18.0 3.6 33 200-232 7-41 (42)
112 PTZ00334 trans-sialidase; Prov 28.0 4.2E+02 0.0091 27.8 9.3 83 200-285 262-349 (780)
113 KOG1310 WD40 repeat protein [G 27.4 3.9E+02 0.0086 26.6 8.3 111 98-232 59-179 (758)
114 TIGR03866 PQQ_ABC_repeats PQQ- 26.3 4.3E+02 0.0094 22.9 21.1 38 318-355 253-293 (300)
115 PF14583 Pectate_lyase22: Olig 25.2 6E+02 0.013 24.2 14.4 61 221-284 166-231 (386)
116 PF14157 YmzC: YmzC-like prote 25.1 1.1E+02 0.0023 20.5 3.0 17 334-350 41-57 (63)
117 TIGR03866 PQQ_ABC_repeats PQQ- 23.9 4.8E+02 0.01 22.6 23.0 31 319-349 212-244 (300)
118 smart00135 LY Low-density lipo 23.7 1.5E+02 0.0032 17.0 3.5 23 205-232 18-40 (43)
119 cd00216 PQQ_DH Dehydrogenases 23.5 7.1E+02 0.015 24.4 14.6 56 176-237 72-136 (488)
120 PF14870 PSII_BNR: Photosynthe 23.5 5.7E+02 0.012 23.3 16.8 98 179-286 39-140 (302)
121 TIGR02658 TTQ_MADH_Hv methylam 23.4 6.2E+02 0.013 23.7 27.3 112 206-349 204-338 (352)
122 PF05096 Glu_cyclase_2: Glutam 22.8 5.5E+02 0.012 22.9 10.4 57 96-153 180-247 (264)
123 PF08683 CAMSAP_CKK: Microtubu 22.7 2.6E+02 0.0057 21.7 5.3 56 100-155 49-107 (123)
124 TIGR02658 TTQ_MADH_Hv methylam 22.3 6.5E+02 0.014 23.6 27.5 103 65-187 27-140 (352)
125 cd01262 PH_PDK1 3-Phosphoinosi 22.0 1.3E+02 0.0029 21.8 3.3 24 324-347 16-39 (89)
126 PRK04792 tolB translocation pr 21.9 7.3E+02 0.016 24.0 21.1 141 110-276 240-382 (448)
127 TIGR03032 conserved hypothetic 21.8 4.4E+02 0.0095 24.3 7.2 56 199-264 204-260 (335)
128 PRK05137 tolB translocation pr 20.8 7.4E+02 0.016 23.7 25.3 140 110-275 224-365 (435)
129 KOG4378 Nuclear protein COP1 [ 20.2 6.1E+02 0.013 25.0 8.0 98 222-348 142-245 (673)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.5e-35 Score=260.36 Aligned_cols=220 Identities=25% Similarity=0.421 Sum_probs=164.1
Q ss_pred EeeeCceEEEeecCCCceEEEEcccccceeeCCCCCCC--CCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCC
Q 035482 96 VGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEF--QTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYG 173 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 173 (378)
++|||||||+... ..++||||+||+++.||+++.. ......++||||+.+++||||++....... .
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---------~ 68 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---------N 68 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---------C
Confidence 4799999999853 7899999999999999875432 111236899999999999999997643111 1
Q ss_pred ceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEe-EEcCCCccC--cceeE
Q 035482 174 KSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFR-VVEKPDELH--RIHYD 250 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~~~~--~~~~~ 250 (378)
...++||++++++||.+...+........+|++||++||++..........|++||+++|+|+ .+++|.... .....
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 268999999999999987433322223349999999999987521112238999999999999 599997432 23468
Q ss_pred EEEeCCeEEEEEeCCCC-c-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEE
Q 035482 251 LVNLGGCLSAAVPCSSG-K-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL 328 (378)
Q Consensus 251 l~~~~G~L~~v~~~~~~-~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl 328 (378)
|++++|+|+++...... . +||+|++++ +..|+|.++|++.....+. ....++++.++|+|+
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~~----------------~~~~~~~~~~~g~I~ 211 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDLV----------------DDNFLSGFTDKGEIV 211 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhhh----------------hheeEeEEeeCCEEE
Confidence 99999999999876543 3 999999987 4569999999863111110 114578888999999
Q ss_pred EEEcC--Ce-EEEEeCCCC
Q 035482 329 LEYKC--RA-LVSYNPRNE 344 (378)
Q Consensus 329 ~~~~~--~~-l~~yd~~t~ 344 (378)
+...+ +. ++.||++++
T Consensus 212 ~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 212 LCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEeCCCCceEEEEEeccCC
Confidence 98764 44 999999875
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=7.5e-16 Score=127.59 Aligned_cols=149 Identities=25% Similarity=0.384 Sum_probs=100.0
Q ss_pred cEEECCeEEEEeccCCCCCCcEEEEEECCCceE-eEEcCCCccC--cceeEEEEe-CCeEEEEEeCCCC-c-eEEEEeeC
Q 035482 203 QVLVNGRLHWCTWPRYRGPSRLLISFDIADEQF-RVVEKPDELH--RIHYDLVNL-GGCLSAAVPCSSG-K-EIWVMKEY 276 (378)
Q Consensus 203 ~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~-~~i~lP~~~~--~~~~~l~~~-~G~L~~v~~~~~~-~-~iW~l~~~ 276 (378)
+|++||++||++..........|++||+++|+| +.+++|.... .....|++. +|+||++...... . +||+|+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999874332223899999999999 8899998443 345677555 7799999765444 2 99999976
Q ss_pred CC-CCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcC-------CeEEEEeCCCCcEEE
Q 035482 277 DV-KESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKC-------RALVSYNPRNEMFKD 348 (378)
Q Consensus 277 ~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~-------~~l~~yd~~t~~~~~ 348 (378)
+. +++|+|.++|++........ .. .-..+.+.+++++++.... ..++.|+ +++.+++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~------~~--------~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~ 145 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFF------HF--------RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE 145 (164)
T ss_pred ccCcceEEEEEEEecCCCCCccc------cc--------ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence 53 78999999999632111000 00 0111223345666665431 3477888 8888888
Q ss_pred EEEeCC-CCeEEEEEEeCC
Q 035482 349 LLLHGT-PNLFEASVHEGS 366 (378)
Q Consensus 349 v~~~~~-~~~~~~~~y~~s 366 (378)
+.+... ..+...+.|++|
T Consensus 146 ~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 146 VDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred cccccCCCCCCCEEEECCC
Confidence 887433 244556688887
No 3
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=1.9e-15 Score=120.05 Aligned_cols=112 Identities=23% Similarity=0.481 Sum_probs=86.5
Q ss_pred cEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCC--CccCcceeEEEEeCCeEEEEEeCCCC---c-eEEEEeeC
Q 035482 203 QVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKP--DELHRIHYDLVNLGGCLSAAVPCSSG---K-EIWVMKEY 276 (378)
Q Consensus 203 ~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP--~~~~~~~~~l~~~~G~L~~v~~~~~~---~-~iW~l~~~ 276 (378)
++++||.+||++.. .......|++||+++|+|+.|++| .........|++++|+|+++...... . +||+|+++
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 58999999999976 344568999999999999999999 33344567899999999999876543 2 99999998
Q ss_pred CCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEE
Q 035482 277 DVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLE 330 (378)
Q Consensus 277 ~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~ 330 (378)
+ +++|++.+.+-....... .....+.+.++.++|++++.
T Consensus 80 ~-k~~Wsk~~~~lp~~~~~~--------------~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 E-KQEWSKKHIVLPPSWQHF--------------VHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred c-cceEEEEEEECChHHhcc--------------cCCcEEEEEEEcCCCEEEEE
Confidence 7 689998876543211100 01146788999999999998
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.47 E-value=4.1e-11 Score=109.47 Aligned_cols=303 Identities=12% Similarity=0.133 Sum_probs=151.8
Q ss_pred CCCcHHHHHHHhccCC-cccccccccchhhhhhhccCCCccccccccCCCCCCEEEEEeccCCCCcEEEEec--CCCCc-
Q 035482 2 EYLPQEIVLDILSRLP-VTSLLHFKLVCKAWLNTAQNPLLPSLQFSRMAKNDPCLILHCDYPIRNQLYSFEL--SSRDE- 77 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~- 77 (378)
++||+||+..|..||| ..+++|||+|||+||+.+....= .. ..++.|++++..-.+..+ +...+. ...+.
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KN----PFRTRPLILFNPINPSET-LTDDRSYISRPGAF 78 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cC----CcccccccccCcccCCCC-ccccccccccccce
Confidence 5799999999999998 66999999999999998864210 00 011123333321111000 000000 00000
Q ss_pred -CCcceeeeccCCCCceeEEeeeCceEEEeecC-CCceEEEEcccccceeeCCCCCC----CC--CccEEEEE-EEeCC-
Q 035482 78 -DNQTVHQIRVPALPEFDVVGSCKGLLCLCDSS-TKNRLYVYNPFTRNYVELPKSTE----FQ--TQDVVFGF-GFHPT- 147 (378)
Q Consensus 78 -~~~~~~~~~~~~~~~~~~~~s~~GLl~~~~~~-~~~~~~V~NP~T~~~~~LP~~~~----~~--~~~~~~~l-~~d~~- 147 (378)
.......++. .-++..|+|...+.. ..+++.+.||+++....+|+... .. .-...+.+ +.+..
T Consensus 79 ls~~~~~r~~~-------~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~~ 151 (373)
T PLN03215 79 LSRAAFFRVTL-------SSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKRR 151 (373)
T ss_pred eeeeEEEEeec-------CCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEeccccc
Confidence 0001111111 013568998776543 45789999999999888875211 00 00111111 11100
Q ss_pred --CCCeE-EEEEEEEecCCC-CcccccCCCceEEEEEE------cCCCCeEEeCcccceeecCCCcEEECCeEEEEeccC
Q 035482 148 --TNKYK-VVKIDYCRKTHG-NHRYYRGYGKSEVQILT------LGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPR 217 (378)
Q Consensus 148 --~~~yk-vv~~~~~~~~~~-~~~~~~~~~~~~~~Vys------s~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~ 217 (378)
...|+ ++.+. ....++ ++ ..+-|+. .+.++|..++.... .....++.+|++|-+...
T Consensus 152 ~~~~~~~~~~~~~-~~~~~~~~~--------~vl~i~~~g~l~~w~~~~Wt~l~~~~~---~~~DIi~~kGkfYAvD~~- 218 (373)
T PLN03215 152 ETRPGYQRSALVK-VKEGDNHRD--------GVLGIGRDGKINYWDGNVLKALKQMGY---HFSDIIVHKGQTYALDSI- 218 (373)
T ss_pred ccccceeEEEEEE-eecCCCcce--------EEEEEeecCcEeeecCCeeeEccCCCc---eeeEEEEECCEEEEEcCC-
Confidence 01131 11111 111111 00 1122221 22467887764222 345678999999998543
Q ss_pred CCCCCcEEEEEECCCceEeEEcCC----C--ccCcceeEEEEeCCeEEEEEeCCC--------------C--c-eEEEEe
Q 035482 218 YRGPSRLLISFDIADEQFRVVEKP----D--ELHRIHYDLVNLGGCLSAAVPCSS--------------G--K-EIWVMK 274 (378)
Q Consensus 218 ~~~~~~~il~fD~~~e~~~~i~lP----~--~~~~~~~~l~~~~G~L~~v~~~~~--------------~--~-~iW~l~ 274 (378)
+.+.++|.+-+. +.+..+ . +......+|++..|+|++|..... . . +|+.++
T Consensus 219 -----G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD 292 (373)
T PLN03215 219 -----GIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD 292 (373)
T ss_pred -----CeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence 678888743221 222111 1 111234679999999999875210 1 1 777776
Q ss_pred eCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEEE
Q 035482 275 EYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 275 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~~~l~~yd~~t~~~~~v~ 350 (378)
. ....|+++.+++=. .+......++.....+ .-+-.++-++..++....+||++.++...+.
T Consensus 293 ~--~~~~WveV~sLgd~---aLFlG~~~s~sv~a~e---------~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 293 D--ELAKWMEVKTLGDN---AFVMATDTCFSVLAHE---------FYGCLPNSIYFTEDTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred C--CCCcEEEecccCCe---EEEEECCccEEEecCC---------CCCccCCEEEEECCCcceEEECCCCCccceE
Confidence 4 24789998876521 0000000111000000 0011345666666677899999999977664
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.17 E-value=6.2e-09 Score=102.78 Aligned_cols=215 Identities=11% Similarity=0.106 Sum_probs=134.8
Q ss_pred EeeeCceEEEeecCC-----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCccccc
Q 035482 96 VGSCKGLLCLCDSST-----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYR 170 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 170 (378)
++..+|.|.+.++.. ...+...||.+++|..+|+.+..+.....+.+ + -||.+++.....
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~-----g~IYviGG~~~~-------- 363 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--D-----DTIYAIGGQNGT-------- 363 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--C-----CEEEEECCcCCC--------
Confidence 556688876665421 24578999999999999987754432222222 2 256666543211
Q ss_pred CCCceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCC------------------CCCcEEEEEECCC
Q 035482 171 GYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYR------------------GPSRLLISFDIAD 232 (378)
Q Consensus 171 ~~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~------------------~~~~~il~fD~~~ 232 (378)
.....+++|+..+++|..++.+|.... ...++.++|.+|.+++.... .....+.+||+.+
T Consensus 364 -~~~~sve~Ydp~~~~W~~~~~mp~~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~t 441 (557)
T PHA02713 364 -NVERTIECYTMGDDKWKMLPDMPIALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVN 441 (557)
T ss_pred -CCCceEEEEECCCCeEEECCCCCcccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCC
Confidence 112579999999999999887775443 34567889999999865211 0135699999999
Q ss_pred ceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCCCc-eEEEEeeCCCC--CceeeEEEEccCCCCCccccccCcccccc
Q 035482 233 EQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSSGK-EIWVMKEYDVK--ESWIKEYNIGIHVPRGLEQDLSQSFRDSK 308 (378)
Q Consensus 233 e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~~~-~iW~l~~~~~~--~~W~~~~~i~~~~~~~~~~~~~~~~~~~~ 308 (378)
++|..++ +|. .+....+++++|+|+++....... ..=..+.|... ..|+..-.+... +
T Consensus 442 d~W~~v~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r-------------- 503 (557)
T PHA02713 442 NIWETLPNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--L-------------- 503 (557)
T ss_pred CeEeecCCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--c--------------
Confidence 9999874 333 223456788999999997543221 11123445443 479877654321 0
Q ss_pred ccccCceeEEEEEeeCCcEEEEEcCC---eEEEEeCCCCcEEEEEEe
Q 035482 309 FFRNRSFVRVLCLLKNGEILLEYKCR---ALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 309 ~~~~~~~~~~~~~~~~g~vl~~~~~~---~l~~yd~~t~~~~~v~~~ 352 (378)
.....+. -+|.|.++.+.. .+-.||++|++|+.+.-+
T Consensus 504 -----~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 504 -----SALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred -----ccceeEE--ECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 0011111 256666665422 477999999999988644
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.09 E-value=1.6e-08 Score=99.68 Aligned_cols=214 Identities=12% Similarity=0.166 Sum_probs=140.5
Q ss_pred EEeeeCceEEEeecCC-----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccc
Q 035482 95 VVGSCKGLLCLCDSST-----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYY 169 (378)
Q Consensus 95 ~~~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~ 169 (378)
-++..+|.|.+.++.. .+.....||.+++|..+|++...+.......+ ..+|.+++..... .
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~-~----- 393 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGE-K----- 393 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-------CCEEEEEeccccc-c-----
Confidence 3677888887776533 24688999999999999998765432222222 3566666554322 1
Q ss_pred cCCCceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCC-CCcEEEEEECCCceEeEEc-CCCccCcc
Q 035482 170 RGYGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRG-PSRLLISFDIADEQFRVVE-KPDELHRI 247 (378)
Q Consensus 170 ~~~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~il~fD~~~e~~~~i~-lP~~~~~~ 247 (378)
....+|.|+..++.|...+.++.. ......+.++|.+|-+++..... .-..+.+||+.+++|+.++ ++. .+.
T Consensus 394 ---~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~ 467 (571)
T KOG4441|consen 394 ---SLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRS 467 (571)
T ss_pred ---ccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccc
Confidence 126799999999999999877662 24456789999999998863222 3478999999999998873 332 333
Q ss_pred eeEEEEeCCeEEEEEeCCCCceEEEEeeCCC-CCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCc
Q 035482 248 HYDLVNLGGCLSAAVPCSSGKEIWVMKEYDV-KESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGE 326 (378)
Q Consensus 248 ~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 326 (378)
...++.++|+|+++........+=..+-|.. ...|+....+.. ++ ...-+..-++.
T Consensus 468 ~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~--~r---------------------s~~g~~~~~~~ 524 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS--PR---------------------SAVGVVVLGGK 524 (571)
T ss_pred cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc--cc---------------------ccccEEEECCE
Confidence 4568899999999987655322222333332 568987743332 11 01111122445
Q ss_pred EEEEEcC------CeEEEEeCCCCcEEEEE
Q 035482 327 ILLEYKC------RALVSYNPRNEMFKDLL 350 (378)
Q Consensus 327 vl~~~~~------~~l~~yd~~t~~~~~v~ 350 (378)
+.++.+. ..+-.||+++++|+.+.
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred EEEEecccCccccceeEEcCCCCCceeeCC
Confidence 5554331 45888999999999986
No 7
>PHA03098 kelch-like protein; Provisional
Probab=98.93 E-value=2.4e-07 Score=91.80 Aligned_cols=210 Identities=13% Similarity=0.131 Sum_probs=127.5
Q ss_pred eeeCceEEEeecCC-----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccC
Q 035482 97 GSCKGLLCLCDSST-----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRG 171 (378)
Q Consensus 97 ~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 171 (378)
+..++.|.+.++.. ...++.+||.|++|..+|+.+..+.....+.+ + =++..++.....
T Consensus 291 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~-----~~lyv~GG~~~~--------- 354 (534)
T PHA03098 291 VVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--N-----NRIYVIGGIYNS--------- 354 (534)
T ss_pred EEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--C-----CEEEEEeCCCCC---------
Confidence 34455554443321 13688999999999999987644432222221 1 245555433211
Q ss_pred CCceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCC-CCCCcEEEEEECCCceEeEEc-CCCccCccee
Q 035482 172 YGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRY-RGPSRLLISFDIADEQFRVVE-KPDELHRIHY 249 (378)
Q Consensus 172 ~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~ 249 (378)
.....+++|+..+++|+..+.+|... ....++.++|.+|.+++... ......+..||+.+++|..++ +|... ...
T Consensus 355 ~~~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~ 431 (534)
T PHA03098 355 ISLNTVESWKPGESKWREEPPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH--YGG 431 (534)
T ss_pred EecceEEEEcCCCCceeeCCCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc--cCc
Confidence 11256899999999999988776543 33456788999999987421 122367999999999999874 44322 233
Q ss_pred EEEEeCCeEEEEEeCCCC-----c-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEee
Q 035482 250 DLVNLGGCLSAAVPCSSG-----K-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLK 323 (378)
Q Consensus 250 ~l~~~~G~L~~v~~~~~~-----~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (378)
..+..+|+|+++...... . .+|..+. ....|+..-.+.. ++. ... ++. -
T Consensus 432 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~--~r~-------------------~~~-~~~-~ 486 (534)
T PHA03098 432 CAIYHDGKIYVIGGISYIDNIKVYNIVESYNP--VTNKWTELSSLNF--PRI-------------------NAS-LCI-F 486 (534)
T ss_pred eEEEECCEEEEECCccCCCCCcccceEEEecC--CCCceeeCCCCCc--ccc-------------------cce-EEE-E
Confidence 566778999888654221 1 4666543 2568987532211 100 001 111 2
Q ss_pred CCcEEEEEc------CCeEEEEeCCCCcEEEEE
Q 035482 324 NGEILLEYK------CRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 324 ~g~vl~~~~------~~~l~~yd~~t~~~~~v~ 350 (378)
+|.+++..+ ...+..||+++++|+.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 566666543 236899999999999886
No 8
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=4.2e-10 Score=72.11 Aligned_cols=40 Identities=40% Similarity=0.727 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHhccCCcccccccccchhhhhhhccCCCc
Q 035482 1 MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLL 40 (378)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F 40 (378)
+..||+|++.+||+.||++++.+++.|||+|+.++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 5789999999999999999999999999999999988744
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.92 E-value=1.6e-07 Score=92.89 Aligned_cols=134 Identities=10% Similarity=0.051 Sum_probs=90.0
Q ss_pred eEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEEeCc
Q 035482 113 RLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRSLGQ 192 (378)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~~~~ 192 (378)
.+..+||.|++|..+++.+..+.....+.+ +-+|..++...... .....++.|+..++.|..++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l-------~~~IYviGG~~~~~--------~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIV-------DNEIIIAGGYNFNN--------PSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEE-------CCEEEEEcCCCCCC--------CccceEEEEECCCCeEeeCCC
Confidence 467889999999999887654322111111 22566654322111 112578999999999999887
Q ss_pred ccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeC
Q 035482 193 VNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 193 ~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~ 264 (378)
+|... .....+.++|++|.+++.........+.+||+.+++|..++ +|.. ......++++|+|+++...
T Consensus 338 m~~~R-~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 338 MIKNR-CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred Ccchh-hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccccEEEECCEEEEEeCC
Confidence 76543 34467889999999987632222457999999999999874 3432 2334567889999998754
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.91 E-value=1.7e-07 Score=92.56 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=137.4
Q ss_pred eeCceEEEeecCC-----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCC
Q 035482 98 SCKGLLCLCDSST-----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGY 172 (378)
Q Consensus 98 s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 172 (378)
+..|.|.+.++.. ...+...||.+++|..+.+.+..+... +.+.-. -+|..++....+. .
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~---~~~~~~----~~lYv~GG~~~~~--------~ 346 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRV---GVAVLN----GKLYVVGGYDSGS--------D 346 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccc---cEEEEC----CEEEEEccccCCC--------c
Confidence 5556665544322 245778999999999998876544322 222212 2666665444211 1
Q ss_pred CceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEc-CCCccCcceeEE
Q 035482 173 GKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVE-KPDELHRIHYDL 251 (378)
Q Consensus 173 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l 251 (378)
....+++|++.++.|..++.+.... .....+.++|.+|-+++......-..+-.||+.+++|..+. ++. .+...-.
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~gv 423 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPMNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGHGV 423 (571)
T ss_pred ccceEEEecCCCCceeccCCccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeeeEE
Confidence 2378999999999999987665433 34466799999999998754445568999999999999885 443 3345667
Q ss_pred EEeCCeEEEEEeCCCCc-eEEEEeeCCC-CCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEE
Q 035482 252 VNLGGCLSAAVPCSSGK-EIWVMKEYDV-KESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILL 329 (378)
Q Consensus 252 ~~~~G~L~~v~~~~~~~-~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~ 329 (378)
++++|+|+++....... .+=..+-|.. ...|+..-.+.... ...-+++ -++.|+.
T Consensus 424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----------------------~~~g~a~-~~~~iYv 480 (571)
T KOG4441|consen 424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----------------------SGFGVAV-LNGKIYV 480 (571)
T ss_pred EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----------------------ccceEEE-ECCEEEE
Confidence 88999999998754443 3333444433 67898776544310 0011222 2555655
Q ss_pred EEcC------CeEEEEeCCCCcEEEEE
Q 035482 330 EYKC------RALVSYNPRNEMFKDLL 350 (378)
Q Consensus 330 ~~~~------~~l~~yd~~t~~~~~v~ 350 (378)
+.+. ..+-.||+++++|+.+.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcc
Confidence 5442 23788999999999985
No 11
>PLN02153 epithiospecifier protein
Probab=98.87 E-value=1.7e-06 Score=80.57 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=126.4
Q ss_pred EeeeCceEEEeecCC------CceEEEEcccccceeeCCCCCCCCCc-cEEEEEEEeCCCCCeEEEEEEEEecCCCCccc
Q 035482 96 VGSCKGLLCLCDSST------KNRLYVYNPFTRNYVELPKSTEFQTQ-DVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRY 168 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~ 168 (378)
++..++-|.+..+.. ...++++||.+++|..+|+....+.. ....++... .=||+.+...... .
T Consensus 28 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~-~---- 98 (341)
T PLN02153 28 IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV----GTKLYIFGGRDEK-R---- 98 (341)
T ss_pred EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE----CCEEEEECCCCCC-C----
Confidence 344566665543321 24689999999999998764322211 111111111 1245555432211 1
Q ss_pred ccCCCceEEEEEEcCCCCeEEeCcc-----cceeecCCCcEEECCeEEEEeccCCCC------CCcEEEEEECCCceEeE
Q 035482 169 YRGYGKSEVQILTLGSQEWRSLGQV-----NYHMLEAPSQVLVNGRLHWCTWPRYRG------PSRLLISFDIADEQFRV 237 (378)
Q Consensus 169 ~~~~~~~~~~Vyss~~~~W~~~~~~-----p~~~~~~~~~v~~~G~lyw~~~~~~~~------~~~~il~fD~~~e~~~~ 237 (378)
....+++|+..++.|..+..+ |... ....++..+|++|.+....... .-..+.+||+++.+|..
T Consensus 99 ----~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 173 (341)
T PLN02153 99 ----EFSDFYSYDTVKNEWTFLTKLDEEGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ 173 (341)
T ss_pred ----ccCcEEEEECCCCEEEEeccCCCCCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee
Confidence 124689999999999987654 3222 2345678899999998752111 11368899999999998
Q ss_pred EcCCC--ccCcceeEEEEeCCeEEEEEeCC----------CCc-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCcc
Q 035482 238 VEKPD--ELHRIHYDLVNLGGCLSAAVPCS----------SGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSF 304 (378)
Q Consensus 238 i~lP~--~~~~~~~~l~~~~G~L~~v~~~~----------~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~ 304 (378)
++.+. ...+....++.++|+++++.... ... ++++.+- ....|++...... .|...
T Consensus 174 l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~--~~~~W~~~~~~g~-~P~~r-------- 242 (341)
T PLN02153 174 LPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP--ASGKWTEVETTGA-KPSAR-------- 242 (341)
T ss_pred CCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc--CCCcEEeccccCC-CCCCc--------
Confidence 76432 11223345677899998875321 011 6676653 2568998754321 12100
Q ss_pred ccccccccCceeEEEEEeeCCcEEEEEcC---------------CeEEEEeCCCCcEEEEEEeC
Q 035482 305 RDSKFFRNRSFVRVLCLLKNGEILLEYKC---------------RALVSYNPRNEMFKDLLLHG 353 (378)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~g~vl~~~~~---------------~~l~~yd~~t~~~~~v~~~~ 353 (378)
.... ++.-++.|++..+. ..++.||+++++|+++...+
T Consensus 243 ---------~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 243 ---------SVFA--HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred ---------ceee--eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence 0011 11124455555331 25899999999999986443
No 12
>PLN02193 nitrile-specifier protein
Probab=98.87 E-value=1.5e-06 Score=84.33 Aligned_cols=203 Identities=12% Similarity=0.098 Sum_probs=121.1
Q ss_pred ceEEEEcccccceeeCCCCCCCCC-ccEEEEE-EEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE
Q 035482 112 NRLYVYNPFTRNYVELPKSTEFQT-QDVVFGF-GFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS 189 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~-~~~~~~l-~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~ 189 (378)
..+++.||.+++|..+|+....+. .....++ .++ =++..+...... .....+++|+..++.|+.
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~~---------~~~ndv~~yD~~t~~W~~ 258 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDAS---------RQYNGFYSFDTTTNEWKL 258 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCCC---------CCCccEEEEECCCCEEEE
Confidence 358899999999998876322111 1111111 111 244444332111 112568999999999998
Q ss_pred eCcc---cceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCc--cCcceeEEEEeCCeEEEEEeC
Q 035482 190 LGQV---NYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDE--LHRIHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 190 ~~~~---p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~--~~~~~~~l~~~~G~L~~v~~~ 264 (378)
+..+ |... ....++..++++|.+...........+.+||+.+.+|+.++.|.. ..+....++..+|+++++...
T Consensus 259 l~~~~~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~ 337 (470)
T PLN02193 259 LTPVEEGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGF 337 (470)
T ss_pred cCcCCCCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECC
Confidence 8654 2221 234556789999999875322234578999999999998865431 122334567789999888654
Q ss_pred CCC--ceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcC---------
Q 035482 265 SSG--KEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKC--------- 333 (378)
Q Consensus 265 ~~~--~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~--------- 333 (378)
... .++|+.+-. ...|++...+.. .|.. . . ..-++.-++.|++..+.
T Consensus 338 ~g~~~~dv~~yD~~--t~~W~~~~~~g~-~P~~----------R--------~-~~~~~~~~~~iyv~GG~~~~~~~~~~ 395 (470)
T PLN02193 338 NGCEVDDVHYYDPV--QDKWTQVETFGV-RPSE----------R--------S-VFASAAVGKHIVIFGGEIAMDPLAHV 395 (470)
T ss_pred CCCccCceEEEECC--CCEEEEeccCCC-CCCC----------c--------c-eeEEEEECCEEEEECCccCCcccccc
Confidence 322 288888752 568988765422 1110 0 0 00111224555555331
Q ss_pred ------CeEEEEeCCCCcEEEEEE
Q 035482 334 ------RALVSYNPRNEMFKDLLL 351 (378)
Q Consensus 334 ------~~l~~yd~~t~~~~~v~~ 351 (378)
..++.||+++++|+++..
T Consensus 396 ~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 396 GPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CccceeccEEEEEcCcCEEEEccc
Confidence 138999999999999864
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=98.85 E-value=7.5e-07 Score=86.73 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=122.0
Q ss_pred eeCceEEEeecCC----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCC
Q 035482 98 SCKGLLCLCDSST----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYG 173 (378)
Q Consensus 98 s~~GLl~~~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 173 (378)
..++.|.+.++.. ......+||.+++|..+|+++..+.....+ .. +-+|..++....
T Consensus 269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-----~~~iYviGG~~~------------ 329 (480)
T PHA02790 269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-----NNKLYVVGGLPN------------ 329 (480)
T ss_pred EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-----CCEEEEECCcCC------------
Confidence 3566665554321 235677899999999999876544322211 11 235665543221
Q ss_pred ceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCccCcceeEEEE
Q 035482 174 KSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVN 253 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~l~~ 253 (378)
...++.|+..+++|..++.+|... ....++.++|.+|.+++.. .....+.+||+++++|+.++.++. .......++
T Consensus 330 ~~sve~ydp~~n~W~~~~~l~~~r-~~~~~~~~~g~IYviGG~~--~~~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~~ 405 (480)
T PHA02790 330 PTSVERWFHGDAAWVNMPSLLKPR-CNPAVASINNVIYVIGGHS--ETDTTTEYLLPNHDQWQFGPSTYY-PHYKSCALV 405 (480)
T ss_pred CCceEEEECCCCeEEECCCCCCCC-cccEEEEECCEEEEecCcC--CCCccEEEEeCCCCEEEeCCCCCC-ccccceEEE
Confidence 145789999999999988777543 2446788999999998752 123568899999999998743321 222345678
Q ss_pred eCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcC
Q 035482 254 LGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKC 333 (378)
Q Consensus 254 ~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~ 333 (378)
++|+|+++... .+++. .. ...|+..-.+.. ++. ... +..-+|.|+++.+.
T Consensus 406 ~~~~IYv~GG~---~e~yd---p~-~~~W~~~~~m~~--~r~-------------------~~~--~~v~~~~IYviGG~ 455 (480)
T PHA02790 406 FGRRLFLVGRN---AEFYC---ES-SNTWTLIDDPIY--PRD-------------------NPE--LIIVDNKLLLIGGF 455 (480)
T ss_pred ECCEEEEECCc---eEEec---CC-CCcEeEcCCCCC--Ccc-------------------ccE--EEEECCEEEEECCc
Confidence 89999988631 12221 22 568986543221 110 011 11225566665431
Q ss_pred ------CeEEEEeCCCCcEEEE
Q 035482 334 ------RALVSYNPRNEMFKDL 349 (378)
Q Consensus 334 ------~~l~~yd~~t~~~~~v 349 (378)
..+-.||+++++|+..
T Consensus 456 ~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 456 YRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCcccceEEEEECCCCeEEec
Confidence 3478999999999754
No 14
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.80 E-value=3.9e-06 Score=78.40 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred EeeeCceEEEeecCCCceEEEEcc--cccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCC
Q 035482 96 VGSCKGLLCLCDSSTKNRLYVYNP--FTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYG 173 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 173 (378)
.+..++-|.+..+.....+++.++ .+++|..+|+.+..++..... ...+ -+|..+.......... ....
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~-~~~~-----~~iYv~GG~~~~~~~~---~~~~ 83 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA-AAID-----GKLYVFGGIGKANSEG---SPQV 83 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE-EEEC-----CEEEEEeCCCCCCCCC---ccee
Confidence 345577776655433456777774 678899999866322211111 1112 2566665432111000 0001
Q ss_pred ceEEEEEEcCCCCeEEeCc-ccceeecCCCcE-EECCeEEEEeccCCCC-------------------------------
Q 035482 174 KSEVQILTLGSQEWRSLGQ-VNYHMLEAPSQV-LVNGRLHWCTWPRYRG------------------------------- 220 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~-~p~~~~~~~~~v-~~~G~lyw~~~~~~~~------------------------------- 220 (378)
...++.|+..+++|+.+.. +|... ....++ ..+|++|.+.......
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE 162 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence 2468999999999999863 22221 122233 5799999987642100
Q ss_pred ---CCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCC---Cc-eEEEEeeCCCCCceeeEEEE
Q 035482 221 ---PSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSS---GK-EIWVMKEYDVKESWIKEYNI 288 (378)
Q Consensus 221 ---~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~---~~-~iW~l~~~~~~~~W~~~~~i 288 (378)
....+.+||+.+++|+.++ +|.. ......++.++|+|+++..... .. ++|..+-......|+..-.+
T Consensus 163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 163 DYFWNKNVLSYDPSTNQWRNLGENPFL-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred HcCccceEEEEECCCCceeECccCCCC-cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCC
Confidence 0257999999999999984 4431 1233456788999999875422 12 67776532224689876543
No 15
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.75 E-value=7e-06 Score=75.91 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=93.7
Q ss_pred eEEEE-ccccc-ceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCe---
Q 035482 113 RLYVY-NPFTR-NYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEW--- 187 (378)
Q Consensus 113 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W--- 187 (378)
.+++. +|..+ +|..+++.+..+..... ..++ =+|+.+...... . ....++.|+..++.|
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~--~~~~-----~~lyviGG~~~~-~--------~~~~v~~~d~~~~~w~~~ 103 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGAS--VSVE-----NGIYYIGGSNSS-E--------RFSSVYRITLDESKEELI 103 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEE--EEEC-----CEEEEEcCCCCC-C--------CceeEEEEEEcCCceeee
Confidence 45655 45433 68888776543321111 2221 245555432211 1 125788999999988
Q ss_pred -EEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCC
Q 035482 188 -RSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCS 265 (378)
Q Consensus 188 -~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~ 265 (378)
+..+.+|... ....++.++|++|.+...........+.+||+.+++|..++ +|... +.....+..+|+|+++....
T Consensus 104 ~~~~~~lp~~~-~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~ 181 (323)
T TIGR03548 104 CETIGNLPFTF-ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGS 181 (323)
T ss_pred eeEcCCCCcCc-cCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCC
Confidence 5556665443 23456788999999987532233468999999999999885 55421 23345567899999987643
Q ss_pred CCc--eEEEEeeCCCCCceeeEEE
Q 035482 266 SGK--EIWVMKEYDVKESWIKEYN 287 (378)
Q Consensus 266 ~~~--~iW~l~~~~~~~~W~~~~~ 287 (378)
... ++|..+- ....|++...
T Consensus 182 ~~~~~~~~~yd~--~~~~W~~~~~ 203 (323)
T TIGR03548 182 NIAYTDGYKYSP--KKNQWQKVAD 203 (323)
T ss_pred CccccceEEEec--CCCeeEECCC
Confidence 322 6666543 2468976543
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.72 E-value=7.6e-06 Score=77.30 Aligned_cols=182 Identities=12% Similarity=0.012 Sum_probs=104.8
Q ss_pred EeeeCceEEEeecCCCceEEEEccc--ccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCC
Q 035482 96 VGSCKGLLCLCDSSTKNRLYVYNPF--TRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYG 173 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 173 (378)
.+..++-|.+..+.....+++.++. +++|..+|+.+..+...... ...+ =+|..++......... ....
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~-v~~~-----~~IYV~GG~~~~~~~~---~~~~ 104 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA-AFID-----GKLYVFGGIGKTNSEG---SPQV 104 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceE-EEEC-----CEEEEEcCCCCCCCCC---ceeE
Confidence 4556777766544344567777765 57899998765322211111 1111 2455444322100000 0001
Q ss_pred ceEEEEEEcCCCCeEEeCcc-cceeecCCCcEE-ECCeEEEEeccCCC--------------------------------
Q 035482 174 KSEVQILTLGSQEWRSLGQV-NYHMLEAPSQVL-VNGRLHWCTWPRYR-------------------------------- 219 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~~-p~~~~~~~~~v~-~~G~lyw~~~~~~~-------------------------------- 219 (378)
...+++|+..+++|+.+... |... ....++. .+|++|.+++....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~-~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~ 183 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGL-AGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE 183 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcc-cceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence 25689999999999998742 3221 1222334 79999999875210
Q ss_pred --CCCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCC---Cc-eEEEEeeCCCCCceeeEEEE
Q 035482 220 --GPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSS---GK-EIWVMKEYDVKESWIKEYNI 288 (378)
Q Consensus 220 --~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~---~~-~iW~l~~~~~~~~W~~~~~i 288 (378)
.....+.+||+.+++|..+. +|.. ......++..+++|+++..... .. ++|..+-......|++...+
T Consensus 184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 184 DYFFNKEVLSYDPSTNQWKNAGESPFL-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred hcCcCceEEEEECCCCeeeECCcCCCC-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 01257999999999999874 4431 1223456778999998875321 22 78876543335789876654
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.69 E-value=5e-09 Score=64.97 Aligned_cols=39 Identities=33% Similarity=0.544 Sum_probs=36.3
Q ss_pred CcHHHHHHHhccCCcccccccccchhhhhhhccCCCccc
Q 035482 4 LPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPS 42 (378)
Q Consensus 4 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 42 (378)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887643
No 18
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.65 E-value=1.5e-09 Score=69.95 Aligned_cols=41 Identities=39% Similarity=0.567 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHhccCCcccccccccchhhhhhhccCCCccc
Q 035482 2 EYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPS 42 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 42 (378)
.+||+|++.+||.+|+++++++++.|||+|++++.++.+-.
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 46999999999999999999999999999999998876543
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=98.58 E-value=3.7e-06 Score=81.94 Aligned_cols=141 Identities=10% Similarity=0.060 Sum_probs=96.5
Q ss_pred EeeeCceEEEeecC-CCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCc
Q 035482 96 VGSCKGLLCLCDSS-TKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGK 174 (378)
Q Consensus 96 ~~s~~GLl~~~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 174 (378)
.++.+|-|.+.++. .......++|.+++|..+|+.+..+.....+ .++ =+|.+++..... .
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~-----g~IYviGG~~~~-----------~ 375 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SIN-----NVIYVIGGHSET-----------D 375 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EEC-----CEEEEecCcCCC-----------C
Confidence 45688888766542 2245678899999999999877544322222 222 355555432211 1
Q ss_pred eEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEc-CCCccCcceeEEEE
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVN 253 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~ 253 (378)
..+++|+.+++.|...+.++.... ...++.++|.+|.+++ ...+||+++++|+.++ +|. .+....+++
T Consensus 376 ~~ve~ydp~~~~W~~~~~m~~~r~-~~~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~~--~r~~~~~~v 444 (480)
T PHA02790 376 TTTEYLLPNHDQWQFGPSTYYPHY-KSCALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPIY--PRDNPELII 444 (480)
T ss_pred ccEEEEeCCCCEEEeCCCCCCccc-cceEEEECCEEEEECC--------ceEEecCCCCcEeEcCCCCC--CccccEEEE
Confidence 458899999999999887665432 3456789999999864 3578999999999884 332 234456788
Q ss_pred eCCeEEEEEeCC
Q 035482 254 LGGCLSAAVPCS 265 (378)
Q Consensus 254 ~~G~L~~v~~~~ 265 (378)
++|+|+++....
T Consensus 445 ~~~~IYviGG~~ 456 (480)
T PHA02790 445 VDNKLLLIGGFY 456 (480)
T ss_pred ECCEEEEECCcC
Confidence 999999987643
No 20
>PLN02193 nitrile-specifier protein
Probab=98.54 E-value=3.8e-05 Score=74.64 Aligned_cols=204 Identities=10% Similarity=0.072 Sum_probs=114.7
Q ss_pred eEEEEcccc----cceeeCCCC---CCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCC
Q 035482 113 RLYVYNPFT----RNYVELPKS---TEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQ 185 (378)
Q Consensus 113 ~~~V~NP~T----~~~~~LP~~---~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~ 185 (378)
..++++|.| .+|..+++. |..+.... .... .-+|+.+......+. .....+++|+..++
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~---~~~~----~~~iyv~GG~~~~~~-------~~~~~v~~yD~~~~ 203 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHG---IAQV----GNKIYSFGGEFTPNQ-------PIDKHLYVFDLETR 203 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccE---EEEE----CCEEEEECCcCCCCC-------CeeCcEEEEECCCC
Confidence 467888876 789888653 22221111 1111 124555433211111 01145899999999
Q ss_pred CeEEeCc---ccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCC-C-ccCcceeEEEEeCCeEEE
Q 035482 186 EWRSLGQ---VNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKP-D-ELHRIHYDLVNLGGCLSA 260 (378)
Q Consensus 186 ~W~~~~~---~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP-~-~~~~~~~~l~~~~G~L~~ 260 (378)
+|..+.. .|........++.+++++|.+...........+.+||+.+++|+.++.. . ...+....++..+++|++
T Consensus 204 ~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv 283 (470)
T PLN02193 204 TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV 283 (470)
T ss_pred EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE
Confidence 9997652 2321112334678899999998753222345789999999999987421 1 112233456678899988
Q ss_pred EEeCCCCc---eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEc-----
Q 035482 261 AVPCSSGK---EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYK----- 332 (378)
Q Consensus 261 v~~~~~~~---~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~----- 332 (378)
+....... +++..+-. ...|+....... .+. + +.-..+.+ -+++++++.+
T Consensus 284 ~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~--------~----------R~~~~~~~-~~gkiyviGG~~g~~ 341 (470)
T PLN02193 284 FGGVSATARLKTLDSYNIV--DKKWFHCSTPGD-SFS--------I----------RGGAGLEV-VQGKVWVVYGFNGCE 341 (470)
T ss_pred ECCCCCCCCcceEEEEECC--CCEEEeCCCCCC-CCC--------C----------CCCcEEEE-ECCcEEEEECCCCCc
Confidence 87543322 67776542 468975432110 010 0 00011111 2455655543
Q ss_pred CCeEEEEeCCCCcEEEEEEe
Q 035482 333 CRALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 333 ~~~l~~yd~~t~~~~~v~~~ 352 (378)
-..+..||+++++|+++...
T Consensus 342 ~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred cCceEEEECCCCEEEEeccC
Confidence 14589999999999998743
No 21
>PHA03098 kelch-like protein; Provisional
Probab=98.53 E-value=7.8e-06 Score=81.05 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=109.4
Q ss_pred EeeeCceEEEeecCC----CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccC
Q 035482 96 VGSCKGLLCLCDSST----KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRG 171 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 171 (378)
+++.+|-|.+.++.. ...+.++||.|++|..+|+.+..+...... .++ =++..++.......
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~--~~~-----~~iYv~GG~~~~~~------- 403 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV--NVN-----NLIYVIGGISKNDE------- 403 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE--EEC-----CEEEEECCcCCCCc-------
Confidence 455677776654422 245788999999999998866544322221 111 24555543221111
Q ss_pred CCceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCC---CCcEEEEEECCCceEeEEc-CCCccCcc
Q 035482 172 YGKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRG---PSRLLISFDIADEQFRVVE-KPDELHRI 247 (378)
Q Consensus 172 ~~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~il~fD~~~e~~~~i~-lP~~~~~~ 247 (378)
....+++|+..+++|.....+|... ....++..+|.+|.+++..... .-..+.+||+++++|+.++ +|. ...
T Consensus 404 -~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~ 479 (534)
T PHA03098 404 -LLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF--PRI 479 (534)
T ss_pred -ccceEEEEeCCCCeeeecCCCCccc-cCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc--ccc
Confidence 1257899999999999988766543 2345778899999988652111 1235999999999999885 332 123
Q ss_pred eeEEEEeCCeEEEEEeCCCCc---eEEEEeeCCCCCceeeEEE
Q 035482 248 HYDLVNLGGCLSAAVPCSSGK---EIWVMKEYDVKESWIKEYN 287 (378)
Q Consensus 248 ~~~l~~~~G~L~~v~~~~~~~---~iW~l~~~~~~~~W~~~~~ 287 (378)
...++..+|+|+++....... .++..+-. ...|+....
T Consensus 480 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 520 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCK 520 (534)
T ss_pred cceEEEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCC
Confidence 345667799999887544322 77776532 468977654
No 22
>PLN02153 epithiospecifier protein
Probab=98.43 E-value=0.00012 Score=68.34 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=70.6
Q ss_pred eEEEEEEcCCCCeEEeCccccee---ecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCC-C---ccCcc
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHM---LEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKP-D---ELHRI 247 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~---~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP-~---~~~~~ 247 (378)
..+++|+..++.|.....++... ......+.+++++|.+...........+.+||+.+.+|..++-. . ...+.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 46899999999999876432111 11234678899999998753222335789999999999987421 1 11223
Q ss_pred eeEEEEeCCeEEEEEeCCCC---------ceEEEEeeCCCCCceeeEE
Q 035482 248 HYDLVNLGGCLSAAVPCSSG---------KEIWVMKEYDVKESWIKEY 286 (378)
Q Consensus 248 ~~~l~~~~G~L~~v~~~~~~---------~~iW~l~~~~~~~~W~~~~ 286 (378)
....+..+++|+++...... .++|+.+- ....|+...
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~--~~~~W~~l~ 175 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI--ADGKWVQLP 175 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC--CCCeEeeCC
Confidence 44567788998887654211 15666653 246898643
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.41 E-value=3.7e-05 Score=71.11 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=92.6
Q ss_pred EeeeCceEEEeecC----CCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccC
Q 035482 96 VGSCKGLLCLCDSS----TKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRG 171 (378)
Q Consensus 96 ~~s~~GLl~~~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 171 (378)
.+..+|.|.+..+. ....++++||.|++|..+|+.+...+..... ..++ =||..+......
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~-~~~~-----~~iYv~GG~~~~--------- 183 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVC-VKLQ-----NELYVFGGGSNI--------- 183 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceE-EEEC-----CEEEEEcCCCCc---------
Confidence 45678888665432 2357899999999999998754322211111 1111 245555432111
Q ss_pred CCceEEEEEEcCCCCeEEeCcccc-----eeecCCCcEEECCeEEEEeccCCCC--------------------------
Q 035482 172 YGKSEVQILTLGSQEWRSLGQVNY-----HMLEAPSQVLVNGRLHWCTWPRYRG-------------------------- 220 (378)
Q Consensus 172 ~~~~~~~Vyss~~~~W~~~~~~p~-----~~~~~~~~v~~~G~lyw~~~~~~~~-------------------------- 220 (378)
....+++|+..+++|..+..++. ........++.+|.+|.+.......
T Consensus 184 -~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (323)
T TIGR03548 184 -AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLK 262 (323)
T ss_pred -cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCC
Confidence 01346899999999998875431 1111222345579999987652100
Q ss_pred ------CCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeC
Q 035482 221 ------PSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 221 ------~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~ 264 (378)
-...+.+||+.+++|+.++ +|.. .+....++.++|+|+++...
T Consensus 263 ~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 263 PPEWYNWNRKILIYNVRTGKWKSIGNSPFF-ARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred CccccCcCceEEEEECCCCeeeEccccccc-ccCchheEEECCEEEEEecc
Confidence 0257999999999999885 4421 22334678889999988753
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.39 E-value=0.00044 Score=65.38 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred eEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCC---CCCCcEEEEEECCCceEeEEc-CCCccC----c
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRY---RGPSRLLISFDIADEQFRVVE-KPDELH----R 246 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~---~~~~~~il~fD~~~e~~~~i~-lP~~~~----~ 246 (378)
..+++|+..++.|...+.+|.........+.+++++|.+..... .........||+++.+|..++ +|.... .
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 56899999999999988776532233456778999999987521 112234556788899998873 443211 1
Q ss_pred --ceeEEEEeCCeEEEEEeC
Q 035482 247 --IHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 247 --~~~~l~~~~G~L~~v~~~ 264 (378)
.....+.++|+|+++...
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred ccceEeceeECCEEEEeecc
Confidence 112246679999888653
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.18 E-value=0.0011 Score=62.01 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=57.9
Q ss_pred eEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCC-CCCcEEEEE--ECCCceEeEE-cCCCccC---c-
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYR-GPSRLLISF--DIADEQFRVV-EKPDELH---R- 246 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~il~f--D~~~e~~~~i-~lP~~~~---~- 246 (378)
..+++|+..+++|..++.+|.........+.++|++|.+...... .....+..| |.++++|..+ ++|.... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 469999999999999987764322334567889999999865211 112234444 4567799876 3443211 1
Q ss_pred -ceeEEEEeCCeEEEEEeC
Q 035482 247 -IHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 247 -~~~~l~~~~G~L~~v~~~ 264 (378)
.....+.++|+|+++...
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred ccEEeeeEECCEEEEeecC
Confidence 123366789999988653
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.74 E-value=0.0013 Score=56.72 Aligned_cols=212 Identities=14% Similarity=0.128 Sum_probs=118.1
Q ss_pred CceEEEEcccccceeeCCCCCCCCCc---cEEEEE-EEeCCCCCe--EEEEEEEEecCCCCcccccCCCceEEEEEEcCC
Q 035482 111 KNRLYVYNPFTRNYVELPKSTEFQTQ---DVVFGF-GFHPTTNKY--KVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGS 184 (378)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~---~~~~~l-~~d~~~~~y--kvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~ 184 (378)
.-.+.|.|..+-+|.++|+....... ...+-+ -|....-.| |+..-....+.+ .....++-|+.++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~e--------gaCN~Ly~fDp~t 114 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDE--------GACNLLYEFDPET 114 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcc--------cccceeeeecccc
Confidence 45688999999999999983221110 000000 011111111 122211111111 1245678899999
Q ss_pred CCeEEeCc---ccceeecCCCcEEECCeEEEEeccCCC--CCCcEEEEEECCCceEeEEc---CCCccCcceeEEEEeCC
Q 035482 185 QEWRSLGQ---VNYHMLEAPSQVLVNGRLHWCTWPRYR--GPSRLLISFDIADEQFRVVE---KPDELHRIHYDLVNLGG 256 (378)
Q Consensus 185 ~~W~~~~~---~p~~~~~~~~~v~~~G~lyw~~~~~~~--~~~~~il~fD~~~e~~~~i~---lP~~~~~~~~~l~~~~G 256 (378)
+.|+.... +|... ...++.+.+..+|-+....+. .-+..+.+||++|++|+.+. .|+.- +......+++|
T Consensus 115 ~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~ 192 (392)
T KOG4693|consen 115 NVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDG 192 (392)
T ss_pred ccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh-hhhhhhhhccc
Confidence 99997652 22211 345677888899998876332 23457999999999999984 35421 12233455567
Q ss_pred eEEEEEeCCCC----------c--eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeC
Q 035482 257 CLSAAVPCSSG----------K--EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKN 324 (378)
Q Consensus 257 ~L~~v~~~~~~----------~--~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (378)
..++.....+. . +|-.|+- ..+.|.....-.+ .|.+-+ + .-.+.=+
T Consensus 193 ~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~-~P~GRR-----S--------------HS~fvYn 250 (392)
T KOG4693|consen 193 MMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTM-KPGGRR-----S--------------HSTFVYN 250 (392)
T ss_pred eEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCc-CCCccc-----c--------------cceEEEc
Confidence 66665543221 1 5656654 2578977633222 232211 1 1111126
Q ss_pred CcEEEEEc--------CCeEEEEeCCCCcEEEEEEeCC
Q 035482 325 GEILLEYK--------CRALVSYNPRNEMFKDLLLHGT 354 (378)
Q Consensus 325 g~vl~~~~--------~~~l~~yd~~t~~~~~v~~~~~ 354 (378)
|++.+..+ -..++.||++|..|..|...|.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 66666533 1459999999999999987765
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.67 E-value=0.00069 Score=61.91 Aligned_cols=225 Identities=15% Similarity=0.133 Sum_probs=117.2
Q ss_pred ceEEEEcccccceeeC--CCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE
Q 035482 112 NRLYVYNPFTRNYVEL--PKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS 189 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~ 189 (378)
+.+|+.|--+.+|+.+ |.+|..+. .......++. +-.+.-+.+...++. .-+....+.+|+..+..|..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRs---shq~va~~s~--~l~~fGGEfaSPnq~----qF~HYkD~W~fd~~trkweq 168 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRS---SHQAVAVPSN--ILWLFGGEFASPNQE----QFHHYKDLWLFDLKTRKWEQ 168 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCc---cceeEEeccC--eEEEeccccCCcchh----hhhhhhheeeeeeccchhee
Confidence 5689999999999987 44333332 2222334432 222222222222211 00122467899999999998
Q ss_pred eCc--ccceeecCCCcEEECCeEEEEeccCCCCC----CcEEEEEECCCceEeEEcCCC--ccCcceeEEEEe-CCeEEE
Q 035482 190 LGQ--VNYHMLEAPSQVLVNGRLHWCTWPRYRGP----SRLLISFDIADEQFRVVEKPD--ELHRIHYDLVNL-GGCLSA 260 (378)
Q Consensus 190 ~~~--~p~~~~~~~~~v~~~G~lyw~~~~~~~~~----~~~il~fD~~~e~~~~i~lP~--~~~~~~~~l~~~-~G~L~~ 260 (378)
+.. .|... ...+.|.....|.-+++-.+.+. -+-+.+||+++=+|+.+..+. ...+..+++.+. +|.+.+
T Consensus 169 l~~~g~PS~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~v 247 (521)
T KOG1230|consen 169 LEFGGGPSPR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVV 247 (521)
T ss_pred eccCCCCCCC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEE
Confidence 862 22211 23344454544444443322211 246899999999999997644 112223445555 777776
Q ss_pred EEeCC---------CC-c--eEEEEeeCC---CCCceeeEEEEccC-CCCCccccccCccccccccccCceeEEEEE---
Q 035482 261 AVPCS---------SG-K--EIWVMKEYD---VKESWIKEYNIGIH-VPRGLEQDLSQSFRDSKFFRNRSFVRVLCL--- 321 (378)
Q Consensus 261 v~~~~---------~~-~--~iW~l~~~~---~~~~W~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 321 (378)
..... .+ . ++|.|+... ++..|+++..+.+. .|+. .-++.+|+.+ ..+..-|+
T Consensus 248 yGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs-----gfsv~va~n~---kal~FGGV~D~ 319 (521)
T KOG1230|consen 248 YGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS-----GFSVAVAKNH---KALFFGGVCDL 319 (521)
T ss_pred EcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC-----ceeEEEecCC---ceEEecceecc
Confidence 54321 11 1 999997432 25678888877763 2211 1122223221 11111111
Q ss_pred eeCCcEEEEEcCCeEEEEeCCCCcEEEEEEeCC
Q 035482 322 LKNGEILLEYKCRALVSYNPRNEMFKDLLLHGT 354 (378)
Q Consensus 322 ~~~g~vl~~~~~~~l~~yd~~t~~~~~v~~~~~ 354 (378)
..+++.|--.--..|+.||+..++|.+..+++.
T Consensus 320 eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~ 352 (521)
T KOG1230|consen 320 EEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGK 352 (521)
T ss_pred cccchhhhhhhhhhhhheecccchhhHhhhccC
Confidence 112222211111348999999999988766544
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.42 E-value=0.02 Score=55.95 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=117.9
Q ss_pred eEEEEcccccceeeCCCCCCCCC---ccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE
Q 035482 113 RLYVYNPFTRNYVELPKSTEFQT---QDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS 189 (378)
Q Consensus 113 ~~~V~NP~T~~~~~LP~~~~~~~---~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~ 189 (378)
.++|+|-.++.|.........+. ....++++ =+++.++....... ....++.|+..++.|+.
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-------~~l~lfGG~~~~~~--------~~~~l~~~d~~t~~W~~ 153 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-------DKLYLFGGTDKKYR--------NLNELHSLDLSTRTWSL 153 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC-------CeEEEEccccCCCC--------ChhheEeccCCCCcEEE
Confidence 49999999988887755332221 11112221 23333332221111 12579999999999998
Q ss_pred eCcccc--eeecCCCcEEECCeEEEEeccCCCC-CCcEEEEEECCCceEeEEcCCC--ccCcceeEEEEeCCeEEEEEeC
Q 035482 190 LGQVNY--HMLEAPSQVLVNGRLHWCTWPRYRG-PSRLLISFDIADEQFRVVEKPD--ELHRIHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 190 ~~~~p~--~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~il~fD~~~e~~~~i~lP~--~~~~~~~~l~~~~G~L~~v~~~ 264 (378)
...... ......+++..+.++|.+....... ..+.+.+||+++.+|..+.... ...+....++..+++++++...
T Consensus 154 l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 154 LSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGG 233 (482)
T ss_pred ecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecc
Confidence 763221 1113445666777888877653332 5678999999999999986543 2223445677778888888765
Q ss_pred C-CCc---eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEE--------c
Q 035482 265 S-SGK---EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEY--------K 332 (378)
Q Consensus 265 ~-~~~---~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~--------~ 332 (378)
. ... ++|.++-. ...|.+.-...- .|. .+.| ...... +..+++.. .
T Consensus 234 ~~~~~~l~D~~~ldl~--~~~W~~~~~~g~-~p~---------~R~~---------h~~~~~-~~~~~l~gG~~~~~~~~ 291 (482)
T KOG0379|consen 234 DDGDVYLNDVHILDLS--TWEWKLLPTGGD-LPS---------PRSG---------HSLTVS-GDHLLLFGGGTDPKQEP 291 (482)
T ss_pred ccCCceecceEeeecc--cceeeeccccCC-CCC---------Ccce---------eeeEEE-CCEEEEEcCCccccccc
Confidence 4 222 99999863 367874432221 121 0111 111111 22233321 1
Q ss_pred CCeEEEEeCCCCcEEEEEEeC
Q 035482 333 CRALVSYNPRNEMFKDLLLHG 353 (378)
Q Consensus 333 ~~~l~~yd~~t~~~~~v~~~~ 353 (378)
-..++.||.++..|.++...+
T Consensus 292 l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 292 LGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccceeeeeccc
Confidence 245788999999999987554
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.33 E-value=0.001 Score=59.36 Aligned_cols=39 Identities=38% Similarity=0.597 Sum_probs=36.4
Q ss_pred CCCc----HHHHHHHhccCCcccccccccchhhhhhhccCCCc
Q 035482 2 EYLP----QEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLL 40 (378)
Q Consensus 2 ~~LP----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F 40 (378)
..|| +++.+.||+.|...+|..|..|||+|+++++++..
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 4689 99999999999999999999999999999999864
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.26 E-value=0.004 Score=53.83 Aligned_cols=111 Identities=8% Similarity=0.104 Sum_probs=75.8
Q ss_pred eEEEEEEcCCCCeEEeC--cccceeecCCCcEEECCeEEEEeccCCC---------CCCcEEEEEECCCceEeEEcC-CC
Q 035482 175 SEVQILTLGSQEWRSLG--QVNYHMLEAPSQVLVNGRLHWCTWPRYR---------GPSRLLISFDIADEQFRVVEK-PD 242 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~~---------~~~~~il~fD~~~e~~~~i~l-P~ 242 (378)
..+++++..|-.||.+. ..|........++..+|.+|-+....+. .-.+.|++||+.|+.|...+- |.
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 56889999999999875 2233333455677888999999876432 123589999999999977531 11
Q ss_pred -ccCcceeEEEEeCCeEEEEEeCCCCc-----eEEEEeeCCCCCceeeEEE
Q 035482 243 -ELHRIHYDLVNLGGCLSAAVPCSSGK-----EIWVMKEYDVKESWIKEYN 287 (378)
Q Consensus 243 -~~~~~~~~l~~~~G~L~~v~~~~~~~-----~iW~l~~~~~~~~W~~~~~ 287 (378)
...+......+.+|++++........ ++|..+- ....|.+...
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~ 285 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISV 285 (392)
T ss_pred CCCcccccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeec
Confidence 22334456788999999887654321 8888764 2567877543
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00019 Score=63.16 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHhccCCcccccccccchhhhhhhccCCCc
Q 035482 2 EYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLL 40 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F 40 (378)
..||||++..||+.|+.|+|+++..|||+|+++.++...
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 479999999999999999999999999999999887654
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.06 E-value=0.088 Score=51.44 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=94.7
Q ss_pred ceEEEEcccccceeeCCCCCC---CCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeE
Q 035482 112 NRLYVYNPFTRNYVELPKSTE---FQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWR 188 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~ 188 (378)
..+...|+.|++|..+.+... .+....+++. + + ||+.++......+ ....++||+..+..|.
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~--g----~-~l~vfGG~~~~~~--------~~ndl~i~d~~~~~W~ 203 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV--G----T-KLVVFGGIGGTGD--------SLNDLHIYDLETSTWS 203 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEE--C----C-EEEEECCccCccc--------ceeeeeeeccccccce
Confidence 378999999999999865332 1222222222 1 2 3444332222211 2367999999999999
Q ss_pred EeCcccce--eecCCCcEEECCeEEEEeccC-CCCCCcEEEEEECCCceEeEEcCCC---ccCcceeEEEEeCCeEEEEE
Q 035482 189 SLGQVNYH--MLEAPSQVLVNGRLHWCTWPR-YRGPSRLLISFDIADEQFRVVEKPD---ELHRIHYDLVNLGGCLSAAV 262 (378)
Q Consensus 189 ~~~~~p~~--~~~~~~~v~~~G~lyw~~~~~-~~~~~~~il~fD~~~e~~~~i~lP~---~~~~~~~~l~~~~G~L~~v~ 262 (378)
++...... .......+.+++.++.+.+.. ....-..+..||+.+.+|..++ +. ...+....++..+..+.++.
T Consensus 204 ~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~~~~~l~g 282 (482)
T KOG0379|consen 204 ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSGDHLLLFG 282 (482)
T ss_pred ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEECCEEEEEc
Confidence 88632211 123445566666666665542 2223457999999998888432 11 11233345565566677766
Q ss_pred eCCC----Cc-eEEEEeeCCCCCceeeEEEEc
Q 035482 263 PCSS----GK-EIWVMKEYDVKESWIKEYNIG 289 (378)
Q Consensus 263 ~~~~----~~-~iW~l~~~~~~~~W~~~~~i~ 289 (378)
.... .. ++|.|... +..|.+.....
T Consensus 283 G~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 283 GGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred CCccccccccccccccccc--ccceeeeeccc
Confidence 5544 23 88988753 57898887766
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.41 E-value=0.18 Score=46.75 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=70.3
Q ss_pred eEEEEEEcCCCCeEEeCcccceee-cCCCcEEE-CCeEEEEeccCCCCCC------cEEEEEECCCceEeEEcCCCcc-C
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHML-EAPSQVLV-NGRLHWCTWPRYRGPS------RLLISFDIADEQFRVVEKPDEL-H 245 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~-~~~~~v~~-~G~lyw~~~~~~~~~~------~~il~fD~~~e~~~~i~lP~~~-~ 245 (378)
..+.+|+.+++.|+.+..+...+. ....+|.+ .|.+|.+++.....++ .-+-.||+.+.+|..+.++.+- .
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 357889999999998864322211 22334444 4766555544322221 2588999999999999887632 2
Q ss_pred cceeEEEEeCCeEEEEEe-CCCCc------eEEEEeeCCCCCceeeEEE
Q 035482 246 RIHYDLVNLGGCLSAAVP-CSSGK------EIWVMKEYDVKESWIKEYN 287 (378)
Q Consensus 246 ~~~~~l~~~~G~L~~v~~-~~~~~------~iW~l~~~~~~~~W~~~~~ 287 (378)
+...+++..+.+|.+... ++... ++|+.+- +...|++...
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL--dtykW~Klep 224 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL--DTYKWSKLEP 224 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec--cceeeeeccC
Confidence 334577788888877653 22221 8888765 3578998875
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.10 E-value=0.0013 Score=58.13 Aligned_cols=44 Identities=30% Similarity=0.585 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHhccCC-----cccccccccchhhhhhhccCCCccccc
Q 035482 1 MEYLPQEIVLDILSRLP-----VTSLLHFKLVCKAWLNTAQNPLLPSLQ 44 (378)
Q Consensus 1 ~~~LP~Dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~~~F~~~~ 44 (378)
|+.||||++.+||.++= ..+|-++.+|||.|+-...+|.|-+..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46799999999998765 589999999999999999999885543
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.96 E-value=0.02 Score=36.68 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=32.3
Q ss_pred CCcEEECCeEEEEeccCC-CCCCcEEEEEECCCceEeEEc
Q 035482 201 PSQVLVNGRLHWCTWPRY-RGPSRLLISFDIADEQFRVVE 239 (378)
Q Consensus 201 ~~~v~~~G~lyw~~~~~~-~~~~~~il~fD~~~e~~~~i~ 239 (378)
.+++.++|.+|.+++... ......+..||+++++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 466899999999998743 344678999999999999984
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.81 E-value=0.79 Score=40.39 Aligned_cols=125 Identities=13% Similarity=0.198 Sum_probs=77.6
Q ss_pred eeEEeeeCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCC
Q 035482 93 FDVVGSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGY 172 (378)
Q Consensus 93 ~~~~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~ 172 (378)
+-+++.-+|-|-+..- ..+.+.-+||.++.-.++|++......... ...|+.. -+++....
T Consensus 192 yGi~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~gsRr--iwsdpig----~~wittwg------------ 252 (353)
T COG4257 192 YGICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAGSRR--IWSDPIG----RAWITTWG------------ 252 (353)
T ss_pred cceEECCCCcEEEEec-cccceEEcccccCCcceecCCCcccccccc--cccCccC----cEEEeccC------------
Confidence 3467788888877643 346778899999988888886653222221 2334432 12221111
Q ss_pred CceEEEEEEcCCCCeEEeCcccceeecCCCcEEEC-CeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCc
Q 035482 173 GKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVN-GRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDE 243 (378)
Q Consensus 173 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~-G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 243 (378)
.-.++-|+..+.+|++...+.... ...+++++ --.-|+..- ..+.|..||.++++|.++++|..
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs~a--rpys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGSKA--RPYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred -CceeeEeCcccccceeeeCCCCCC--CcceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCCC
Confidence 156788999999999876432221 12233443 223465433 36899999999999999999973
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.61 E-value=0.087 Score=32.97 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=31.8
Q ss_pred CCcEEECCeEEEEeccCC-CCCCcEEEEEECCCceEeEEc
Q 035482 201 PSQVLVNGRLHWCTWPRY-RGPSRLLISFDIADEQFRVVE 239 (378)
Q Consensus 201 ~~~v~~~G~lyw~~~~~~-~~~~~~il~fD~~~e~~~~i~ 239 (378)
...+.++|.+|.+++... ......+.+||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 356889999999998744 345578999999999999873
No 38
>PF13964 Kelch_6: Kelch motif
Probab=94.08 E-value=0.16 Score=32.40 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=26.8
Q ss_pred EeeeCceEEEeecCC-----CceEEEEcccccceeeCCCCCC
Q 035482 96 VGSCKGLLCLCDSST-----KNRLYVYNPFTRNYVELPKSTE 132 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~-----~~~~~V~NP~T~~~~~LP~~~~ 132 (378)
.++.+|-|.+-.+.. ...+.++||.|++|..+|+.+.
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence 345666665554322 3678999999999999998764
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.00 E-value=0.19 Score=31.92 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=31.9
Q ss_pred CCcEEECCeEEEEecc---CCCCCCcEEEEEECCCceEeEEcC
Q 035482 201 PSQVLVNGRLHWCTWP---RYRGPSRLLISFDIADEQFRVVEK 240 (378)
Q Consensus 201 ~~~v~~~G~lyw~~~~---~~~~~~~~il~fD~~~e~~~~i~l 240 (378)
..++..+|++|.+... ........+.+||+++.+|+.++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 4567889999999877 233456789999999999998854
No 40
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.22 E-value=7 Score=33.73 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=56.1
Q ss_pred eCceEEEeecCCCceEEEEcccccceee---CCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCce
Q 035482 99 CKGLLCLCDSSTKNRLYVYNPFTRNYVE---LPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKS 175 (378)
Q Consensus 99 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~ 175 (378)
-+|.|++.. ....++.+|+.||+..+ ++..... . +...+-+|++.. .+ .
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~---~--------~~~~~~~v~v~~----~~-----------~ 86 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISG---A--------PVVDGGRVYVGT----SD-----------G 86 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGS---G--------EEEETTEEEEEE----TT-----------S
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccccccc---e--------eeeccccccccc----ce-----------e
Confidence 678887764 46889999999998654 3222111 1 111112232221 10 3
Q ss_pred EEEEEEcCCC--CeEE-eCcccc-eeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceE
Q 035482 176 EVQILTLGSQ--EWRS-LGQVNY-HMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQF 235 (378)
Q Consensus 176 ~~~Vyss~~~--~W~~-~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~ 235 (378)
.+..++..+| .|+. ....+. ...........++.+|..... ..|.++|+++.+-
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKLVALDPKTGKL 144 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEEEEEETTTTEE
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcEEEEecCCCcE
Confidence 5677887777 7983 432121 111223333446667666544 7999999886543
No 41
>PLN02772 guanylate kinase
Probab=91.43 E-value=1.5 Score=41.13 Aligned_cols=76 Identities=11% Similarity=0.003 Sum_probs=52.3
Q ss_pred cCCCcEEECCeEEEEeccCCCC-CCcEEEEEECCCceEeEEc----CCCccCcceeEEEEeCCeEEEEEeCCCCc-eEEE
Q 035482 199 EAPSQVLVNGRLHWCTWPRYRG-PSRLLISFDIADEQFRVVE----KPDELHRIHYDLVNLGGCLSAAVPCSSGK-EIWV 272 (378)
Q Consensus 199 ~~~~~v~~~G~lyw~~~~~~~~-~~~~il~fD~~~e~~~~i~----lP~~~~~~~~~l~~~~G~L~~v~~~~~~~-~iW~ 272 (378)
...+++.++.++|.++...+.. ....+.+||..+.+|..-. .|.. ...+..++.-+++|.++.-..... +||.
T Consensus 26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~~~~~~w~ 104 (398)
T PLN02772 26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSAPDDSIWF 104 (398)
T ss_pred CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCCCccceEE
Confidence 3467889999999998764332 4578999999999997632 2322 223333444478888887554444 9999
Q ss_pred Eee
Q 035482 273 MKE 275 (378)
Q Consensus 273 l~~ 275 (378)
|+-
T Consensus 105 l~~ 107 (398)
T PLN02772 105 LEV 107 (398)
T ss_pred EEc
Confidence 985
No 42
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.34 E-value=9.8 Score=33.64 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=33.3
Q ss_pred cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEe-EEcCCC
Q 035482 199 EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFR-VVEKPD 242 (378)
Q Consensus 199 ~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~-~i~lP~ 242 (378)
.....|+-||.+|+-... ...|+.||+.++.-. ...||.
T Consensus 70 ~GtG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~ 109 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPG 109 (250)
T ss_pred ccCCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCc
Confidence 345677889999999876 689999999999988 778887
No 43
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=89.85 E-value=2.4 Score=33.22 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=48.2
Q ss_pred cEEEEEECCCc--eEeEEcCCCcc-----C-------cceeEEEEeCCeEEEEEeCCC-------Cc---eEEEEeeC-C
Q 035482 223 RLLISFDIADE--QFRVVEKPDEL-----H-------RIHYDLVNLGGCLSAAVPCSS-------GK---EIWVMKEY-D 277 (378)
Q Consensus 223 ~~il~fD~~~e--~~~~i~lP~~~-----~-------~~~~~l~~~~G~L~~v~~~~~-------~~---~iW~l~~~-~ 277 (378)
..|+..|+-++ .++.|+||... . .....++..+|+|-+|..... .. .+|.|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 46788888765 77889998721 1 122357778999988876432 11 88999874 2
Q ss_pred CCCceeeEEEEccC
Q 035482 278 VKESWIKEYNIGIH 291 (378)
Q Consensus 278 ~~~~W~~~~~i~~~ 291 (378)
....|.+.++++..
T Consensus 86 ~~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 86 SSWEWKKDCEVDLS 99 (131)
T ss_pred CCCCEEEeEEEEhh
Confidence 36789999999873
No 44
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.85 E-value=7.4 Score=36.22 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=49.8
Q ss_pred EEEEEEcCCCCeEEeCc--ccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceE-----------eEEcCCC
Q 035482 176 EVQILTLGSQEWRSLGQ--VNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQF-----------RVVEKPD 242 (378)
Q Consensus 176 ~~~Vyss~~~~W~~~~~--~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~-----------~~i~lP~ 242 (378)
.+.-|+-+++.|+..++ +| +...+.++..-=-|++-..... ...|-+.|+.+..- ..+..|.
T Consensus 200 GTysfDt~~~~W~~~GdW~LP----F~G~a~y~~el~~W~Gls~~~~-~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLP----FHGQAEYVPELDLWFGLSSDGG-GGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeeccceecC----cCCccEECCCcCeEEEeccCCC-CcEEEEEeccccccCCCCCcceeccccccccc
Confidence 46777778889999874 44 3445666666566776552111 15899999977322 2233332
Q ss_pred ccCcceeEEEEe-CCeEEEEEe
Q 035482 243 ELHRIHYDLVNL-GGCLSAAVP 263 (378)
Q Consensus 243 ~~~~~~~~l~~~-~G~L~~v~~ 263 (378)
.......+|+.+ +|+.|++..
T Consensus 275 ~~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 275 EWRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred cccccCceEEECCCCCEEEEEE
Confidence 222234567776 568888864
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.68 E-value=11 Score=33.21 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=87.5
Q ss_pred eEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCC----ceEeEEcCCCccCcceeE
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD----EQFRVVEKPDELHRIHYD 250 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~----e~~~~i~lP~~~~~~~~~ 250 (378)
....+|+..++++|.+.......+ +...+.-||.+.-..+.. .....+-.|+..+ ..|...+-.....+-+..
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FC-Sgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT 122 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFC-SGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPT 122 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcc-cCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCceECcccccCCCcccc
Confidence 446778888888887653222111 223345577776555442 1334677788754 445433211222333445
Q ss_pred EEEe-CCeEEEEEeCCCCc-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEE
Q 035482 251 LVNL-GGCLSAAVPCSSGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL 328 (378)
Q Consensus 251 l~~~-~G~L~~v~~~~~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl 328 (378)
...+ ||++.++....... +.|=-+... ...+ .+.. ...... . .....+..+.+..+|+|+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~-~~~~----~~~~--l~~~~~----~-------~~~nlYP~~~llPdG~lF 184 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPG-PGPV----TLPF--LSQTSD----T-------LPNNLYPFVHLLPDGNLF 184 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCC-CCce----eeec--chhhhc----c-------CccccCceEEEcCCCCEE
Confidence 5555 78888887654332 444221111 1111 1111 000000 0 001124456667899999
Q ss_pred EEEcCCeEEEEeCCCCcE-EEEEEeCCCCeEEEEEEeCCccccC
Q 035482 329 LEYKCRALVSYNPRNEMF-KDLLLHGTPNLFEASVHEGSLSWID 371 (378)
Q Consensus 329 ~~~~~~~l~~yd~~t~~~-~~v~~~~~~~~~~~~~y~~sl~~~~ 371 (378)
+....+ -..||.+++++ +++. ..+...+.-|...|-|-++
T Consensus 185 i~an~~-s~i~d~~~n~v~~~lP--~lPg~~R~YP~sgssvmLP 225 (243)
T PF07250_consen 185 IFANRG-SIIYDYKTNTVVRTLP--DLPGGPRNYPASGSSVMLP 225 (243)
T ss_pred EEEcCC-cEEEeCCCCeEEeeCC--CCCCCceecCCCcceEEec
Confidence 998855 57779999976 4443 4444444445555544333
No 46
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.28 E-value=0.98 Score=28.02 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.2
Q ss_pred ceEEEEEEcCCCCeEEeCccc
Q 035482 174 KSEVQILTLGSQEWRSLGQVN 194 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~~p 194 (378)
...+++|+..++.|+..+.+|
T Consensus 27 ~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEES
T ss_pred eeeEEEEeCCCCEEEEcCCCC
Confidence 478999999999999987654
No 47
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.82 E-value=15 Score=32.04 Aligned_cols=207 Identities=14% Similarity=0.122 Sum_probs=111.5
Q ss_pred eeeCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceE
Q 035482 97 GSCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSE 176 (378)
Q Consensus 97 ~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~ 176 (378)
...+|-|++.+. ....++.++|.+++...+..+. ..|+.++... -+++.... ..
T Consensus 8 d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~--g~l~v~~~----------------~~ 61 (246)
T PF08450_consen 8 DPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPD--GRLYVADS----------------GG 61 (246)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS-------EEEEEEECTT--SEEEEEET----------------TC
T ss_pred ECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC-------CceEEEEccC--CEEEEEEc----------------Cc
Confidence 334677777664 4578999999999886544322 4466667332 23332211 33
Q ss_pred EEEEEcCCCCeEEeCcccc---eee-cCCCcEEECCeEEEEeccCCCC-CC--cEEEEEECCCceEeEEcCCCccCccee
Q 035482 177 VQILTLGSQEWRSLGQVNY---HML-EAPSQVLVNGRLHWCTWPRYRG-PS--RLLISFDIADEQFRVVEKPDELHRIHY 249 (378)
Q Consensus 177 ~~Vyss~~~~W~~~~~~p~---~~~-~~~~~v~~~G~lyw~~~~~~~~-~~--~~il~fD~~~e~~~~i~lP~~~~~~~~ 249 (378)
..+++..++.++.+...+. ... ...-.+--+|.+|.-....... .. ..|..++.. .+...+.- .......
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNG 138 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNG 138 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccccccc
Confidence 5667999998887654321 111 1112233478887765542111 11 679999999 44443310 0111112
Q ss_pred EEEEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEE-ccCCCCCccccccCccccccccccCceeEEEEEeeCCcEE
Q 035482 250 DLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNI-GIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL 328 (378)
Q Consensus 250 ~l~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl 328 (378)
....-+|+..++... ....||...-......+.....+ ++ +... ....=+++..+|.|+
T Consensus 139 i~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 139 IAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDF--PGGP-----------------GYPDGLAVDSDGNLW 198 (246)
T ss_dssp EEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE---SSSS-----------------CEEEEEEEBTTS-EE
T ss_pred eEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEc--CCCC-----------------cCCCcceEcCCCCEE
Confidence 233446765544332 22378888764333446554443 22 1100 123345666788887
Q ss_pred EEE-cCCeEEEEeCCCCcEEEEEEe
Q 035482 329 LEY-KCRALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 329 ~~~-~~~~l~~yd~~t~~~~~v~~~ 352 (378)
+.. ..+++..||++.+.++++.++
T Consensus 199 va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 199 VADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEETTTEEEEEETTSCEEEEEE-S
T ss_pred EEEcCCCEEEEECCCccEEEEEcCC
Confidence 764 468899999997777778766
No 48
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.93 E-value=25 Score=33.35 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCcEEECCeEEEEeccCCCCCCcEEEEEECCCc--eEeEEcCCCccCcceeEEEEeCCeEEEEEeCCCCceEEEEeeCCC
Q 035482 201 PSQVLVNGRLHWCTWPRYRGPSRLLISFDIADE--QFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDV 278 (378)
Q Consensus 201 ~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~~~~~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~ 278 (378)
.+++..+|.+|....+ +.+.++|+.+. .|+. ++.. ...++..+|+|++.... ..+..++....
T Consensus 250 ~sP~v~~~~vy~~~~~------g~l~ald~~tG~~~W~~-~~~~-----~~~~~~~~~~vy~~~~~---g~l~ald~~tG 314 (394)
T PRK11138 250 TTPVVVGGVVYALAYN------GNLVALDLRSGQIVWKR-EYGS-----VNDFAVDGGRIYLVDQN---DRVYALDTRGG 314 (394)
T ss_pred CCcEEECCEEEEEEcC------CeEEEEECCCCCEEEee-cCCC-----ccCcEEECCEEEEEcCC---CeEEEEECCCC
Confidence 5678889999987654 68999999764 5653 2221 01233445666655321 14444443222
Q ss_pred CCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcCCeEEEEeCCCCcEEE
Q 035482 279 KESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKD 348 (378)
Q Consensus 279 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~~~l~~yd~~t~~~~~ 348 (378)
+..|..... .- . ..-.|+. .+|.+++...++.++.+|.++++...
T Consensus 315 ~~~W~~~~~-~~----~------------------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 315 VELWSQSDL-LH----R------------------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cEEEccccc-CC----C------------------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445643210 00 0 0011221 26677777777889999999998654
No 49
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=87.72 E-value=0.91 Score=28.54 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=22.2
Q ss_pred CcEEE-CCeEEEEeccCCC-CCCcEEEEEECCCceEeEEc
Q 035482 202 SQVLV-NGRLHWCTWPRYR-GPSRLLISFDIADEQFRVVE 239 (378)
Q Consensus 202 ~~v~~-~G~lyw~~~~~~~-~~~~~il~fD~~~e~~~~i~ 239 (378)
.++.+ ++.+|.+.+.... .....+..||+++++|+.++
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 34555 5788887765322 23457899999999999983
No 50
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.67 E-value=13 Score=34.59 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=65.5
Q ss_pred CceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEE--------c
Q 035482 111 KNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILT--------L 182 (378)
Q Consensus 111 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vys--------s 182 (378)
....+|+++.|+....+|...........+.+ .=+|.++.......... .......++-+|+ .
T Consensus 85 ~~~t~vyDt~t~av~~~P~l~~pk~~pisv~V-------G~~LY~m~~~~~~~~~~--~~~~~~FE~l~~~~~~~~~~~~ 155 (342)
T PF07893_consen 85 SGRTLVYDTDTRAVATGPRLHSPKRCPISVSV-------GDKLYAMDRSPFPEPAG--RPDFPCFEALVYRPPPDDPSPE 155 (342)
T ss_pred CCCeEEEECCCCeEeccCCCCCCCcceEEEEe-------CCeEEEeeccCcccccc--CccceeEEEeccccccccccCC
Confidence 36689999999999999986543322222222 11255543332211100 0000013333343 1
Q ss_pred CCCCeEEeCcccceee-------cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEE---cCCC
Q 035482 183 GSQEWRSLGQVNYHML-------EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVV---EKPD 242 (378)
Q Consensus 183 ~~~~W~~~~~~p~~~~-------~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i---~lP~ 242 (378)
.+.+|+.++.+|+... ..+.+|+ +|.--|+.... ....-.+||+++.+|+.. .||.
T Consensus 156 ~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~---~~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 156 ESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNG---RRWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecC---CceEEEEEEcCCcceeeccceecCc
Confidence 2237888776665432 1233455 88777776541 013799999999999986 6887
No 51
>smart00612 Kelch Kelch domain.
Probab=86.86 E-value=1.2 Score=27.31 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCeEEeCcccce
Q 035482 175 SEVQILTLGSQEWRSLGQVNYH 196 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~ 196 (378)
..+++|+.+++.|+..+.++..
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCc
Confidence 6789999999999988876643
No 52
>smart00612 Kelch Kelch domain.
Probab=86.57 E-value=2.1 Score=26.12 Aligned_cols=18 Identities=6% Similarity=0.170 Sum_probs=15.3
Q ss_pred CcEEEEEECCCceEeEEc
Q 035482 222 SRLLISFDIADEQFRVVE 239 (378)
Q Consensus 222 ~~~il~fD~~~e~~~~i~ 239 (378)
...+.+||+.+.+|+.++
T Consensus 14 ~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeEEEECCCCCeEccCC
Confidence 457899999999998874
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=84.74 E-value=36 Score=32.21 Aligned_cols=187 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred eeCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEE
Q 035482 98 SCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEV 177 (378)
Q Consensus 98 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 177 (378)
..+|.|.+.. ....++.+|+.||+.++-=+..... .....+ . ++ +|+... . .-.+
T Consensus 118 v~~~~v~v~~--~~g~l~ald~~tG~~~W~~~~~~~~--~ssP~v-~----~~-~v~v~~----~-----------~g~l 172 (394)
T PRK11138 118 VAGGKVYIGS--EKGQVYALNAEDGEVAWQTKVAGEA--LSRPVV-S----DG-LVLVHT----S-----------NGML 172 (394)
T ss_pred EECCEEEEEc--CCCEEEEEECCCCCCcccccCCCce--ecCCEE-E----CC-EEEEEC----C-----------CCEE
Confidence 3467776654 3467889999999855421111100 000011 1 11 233211 1 1357
Q ss_pred EEEEcCCC--CeEEeCcccc-eeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCc--eEeE-EcCCCccCc-----
Q 035482 178 QILTLGSQ--EWRSLGQVNY-HMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADE--QFRV-VEKPDELHR----- 246 (378)
Q Consensus 178 ~Vyss~~~--~W~~~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e--~~~~-i~lP~~~~~----- 246 (378)
..++..+| .|+.....|. ......+++..+|.+|+...+ +.+.++|.++. .|+. +..|.....
T Consensus 173 ~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 173 QALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLV 246 (394)
T ss_pred EEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhccc
Confidence 78888888 6887543221 112335677888988886544 68999999874 4543 222321100
Q ss_pred -ceeEEEEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCC
Q 035482 247 -IHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNG 325 (378)
Q Consensus 247 -~~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 325 (378)
....-+..+|.+++.... ..+..++-...+..|.+... - + ..++ ..++
T Consensus 247 ~~~~sP~v~~~~vy~~~~~---g~l~ald~~tG~~~W~~~~~--~--~----------------------~~~~--~~~~ 295 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYN---GNLVALDLRSGQIVWKREYG--S--V----------------------NDFA--VDGG 295 (394)
T ss_pred ccCCCcEEECCEEEEEEcC---CeEEEEECCCCCEEEeecCC--C--c----------------------cCcE--EECC
Confidence 011223346666654421 24555543322556754311 0 0 0011 1256
Q ss_pred cEEEEEcCCeEEEEeCCCCcE
Q 035482 326 EILLEYKCRALVSYNPRNEMF 346 (378)
Q Consensus 326 ~vl~~~~~~~l~~yd~~t~~~ 346 (378)
.+++...+++++.+|.++++.
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcE
Confidence 677777778899999988864
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.79 E-value=0.42 Score=44.66 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=34.0
Q ss_pred CCcHHHHHHHhccCCcccccccccchhhhhhhccCC
Q 035482 3 YLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNP 38 (378)
Q Consensus 3 ~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~ 38 (378)
.||.+++..||+-|..+++.|++.+||.|+.+..|.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 689999999999999999999999999999988764
No 55
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=82.93 E-value=40 Score=31.30 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=70.7
Q ss_pred CCeEEEEeccCCCCCCcEEEEEECCCce--Ee---EEcCCCccCcceeEEE-EeCCeEEEEEeCCCCc-eEEEEeeCCCC
Q 035482 207 NGRLHWCTWPRYRGPSRLLISFDIADEQ--FR---VVEKPDELHRIHYDLV-NLGGCLSAAVPCSSGK-EIWVMKEYDVK 279 (378)
Q Consensus 207 ~G~lyw~~~~~~~~~~~~il~fD~~~e~--~~---~i~lP~~~~~~~~~l~-~~~G~L~~v~~~~~~~-~iW~l~~~~~~ 279 (378)
+|...|.... ..+.|..|+++++. +. .+.+|.+...+ ++. .-+|+..++....... .++.+.. ..
T Consensus 154 dg~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~s~~v~v~~~~~--~~ 225 (345)
T PF10282_consen 154 DGRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNELSNTVSVFDYDP--SD 225 (345)
T ss_dssp TSSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETTTTEEEEEEEET--TT
T ss_pred CCCEEEEEec----CCCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCCCCcEEEEeecc--cC
Confidence 4655555433 35789999998766 53 35677654432 333 3367766665543333 5555542 24
Q ss_pred CceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEc--CCeEEEEeC--CCCcEEEEEE
Q 035482 280 ESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYK--CRALVSYNP--RNEMFKDLLL 351 (378)
Q Consensus 280 ~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~--~~~l~~yd~--~t~~~~~v~~ 351 (378)
+.++...++.. .|.+... .....-+.+..||+.+++.. .+.|..|++ ++++++.+..
T Consensus 226 g~~~~~~~~~~-~~~~~~~--------------~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 226 GSLTEIQTIST-LPEGFTG--------------ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TEEEEEEEEES-CETTSCS--------------SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred CceeEEEEeee-ccccccc--------------cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 57888888776 2221110 01345677788999888764 456888876 6678888764
No 56
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.21 E-value=56 Score=34.10 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=26.1
Q ss_pred cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCC--ceEeE
Q 035482 199 EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD--EQFRV 237 (378)
Q Consensus 199 ~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~--e~~~~ 237 (378)
....++.++|.+|..... ..++++|.+| +.|+.
T Consensus 186 ~e~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 186 FQATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKF 220 (764)
T ss_pred cccCCEEECCEEEEECCC------CeEEEEECCCCcEEEEE
Confidence 356789999999997654 6899999975 56765
No 57
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.06 E-value=37 Score=30.33 Aligned_cols=221 Identities=12% Similarity=0.118 Sum_probs=110.4
Q ss_pred eeCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCC---CC-CeEEEEEEEEecCC--CCcccccC
Q 035482 98 SCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPT---TN-KYKVVKIDYCRKTH--GNHRYYRG 171 (378)
Q Consensus 98 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~---~~-~ykvv~~~~~~~~~--~~~~~~~~ 171 (378)
+-+|-|-+... ....+-=.||.|++....|-...... ..+.+|-|.+ ++ .--|.++.....+- -.+.-++.
T Consensus 70 apdG~VWft~q-g~gaiGhLdP~tGev~~ypLg~Ga~P--hgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a 146 (353)
T COG4257 70 APDGAVWFTAQ-GTGAIGHLDPATGEVETYPLGSGASP--HGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHA 146 (353)
T ss_pred CCCCceEEecC-ccccceecCCCCCceEEEecCCCCCC--ceEEECCCCCeeEecCcceeEEecCcccceEEeecccccC
Confidence 45777766543 33456668999999998876433221 1111221111 00 01333332110000 00112233
Q ss_pred CCceEEEEEEcCCCCeEEeCc-----c-c---------ceeecCCCcEEE--CCeEEEEeccCCCCCCcEEEEEECCCce
Q 035482 172 YGKSEVQILTLGSQEWRSLGQ-----V-N---------YHMLEAPSQVLV--NGRLHWCTWPRYRGPSRLLISFDIADEQ 234 (378)
Q Consensus 172 ~~~~~~~Vyss~~~~W~~~~~-----~-p---------~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~il~fD~~~e~ 234 (378)
+...+.-||+-..+-|-+... + | ...-....++++ +|.+|+.... .+.|...|..+..
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----gnaiaridp~~~~ 221 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----GNAIARIDPFAGH 221 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----ccceEEcccccCC
Confidence 445788899999999965321 0 1 111123445555 7999887544 5799999999988
Q ss_pred EeEEcCCCccCcceeEEE-EeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccC
Q 035482 235 FRVVEKPDELHRIHYDLV-NLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNR 313 (378)
Q Consensus 235 ~~~i~lP~~~~~~~~~l~-~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (378)
-.+++.|.........+. ..-|++...... ...+-..+- ...+|... . +|.. .
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittwg--~g~l~rfdP--s~~sW~ey-p----LPgs-----------------~ 275 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTWG--TGSLHRFDP--SVTSWIEY-P----LPGS-----------------K 275 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEeccC--CceeeEeCc--ccccceee-e----CCCC-----------------C
Confidence 888888874222111111 112222222100 001111111 12345221 1 1210 0
Q ss_pred ceeEEEEEeeCCcEEEE-EcCCeEEEEeCCCCcEEEEEEe
Q 035482 314 SFVRVLCLLKNGEILLE-YKCRALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 314 ~~~~~~~~~~~g~vl~~-~~~~~l~~yd~~t~~~~~v~~~ 352 (378)
-.-.-+.+.+.|+|.+. ...+.|..||+++.+++.+.+.
T Consensus 276 arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 276 ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred CCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence 01123445557777774 4557799999999999998753
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.03 E-value=2.2 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.499 Sum_probs=13.8
Q ss_pred eEEEEEEcCCCCeEEeCccc
Q 035482 175 SEVQILTLGSQEWRSLGQVN 194 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p 194 (378)
..+++|+..+++|++++.+|
T Consensus 29 ~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --EEEEETTTTEEEE--SS-
T ss_pred CCEEEEECCCCEEEECCCCC
Confidence 57899999999999987655
No 59
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.95 E-value=0.4 Score=47.31 Aligned_cols=42 Identities=31% Similarity=0.484 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHhccCCcccccccccchhhhhhhccCCCccc
Q 035482 1 MEYLPQEIVLDILSRLPVTSLLHFKLVCKAWLNTAQNPLLPS 42 (378)
Q Consensus 1 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~ 42 (378)
+..||.++...||..|+.++++++++||+.|+.++.+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 457999999999999999999999999999999998766544
No 60
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=80.59 E-value=21 Score=34.62 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=48.5
Q ss_pred ceEEEEcccccceeeCCC-CCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCC--eE
Q 035482 112 NRLYVYNPFTRNYVELPK-STEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQE--WR 188 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~-~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~--W~ 188 (378)
+.+.|.|-+|+||.. |. ....+....++||.+|. -|++++..--. +....-+.|.+.... |+
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG----trilvFGGMvE----------YGkYsNdLYELQasRWeWk 121 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG----TRILVFGGMVE----------YGKYSNDLYELQASRWEWK 121 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC----ceEEEEccEee----------eccccchHHHhhhhhhhHh
Confidence 578899999999974 33 11122224556666555 35555432211 112445677777765 55
Q ss_pred EeCc------ccceeecCCCcEEECCeEEEEecc
Q 035482 189 SLGQ------VNYHMLEAPSQVLVNGRLHWCTWP 216 (378)
Q Consensus 189 ~~~~------~p~~~~~~~~~v~~~G~lyw~~~~ 216 (378)
.+.. +|..+....+-+..+.+.|.+..-
T Consensus 122 rlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGL 155 (830)
T KOG4152|consen 122 RLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGL 155 (830)
T ss_pred hcCCCCCCCCCCCCCccCceeEEeccEeEEeccc
Confidence 5431 111111233445667889988753
No 61
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.19 E-value=6.5 Score=24.62 Aligned_cols=32 Identities=9% Similarity=-0.006 Sum_probs=22.1
Q ss_pred CCeEEEEeccC--CCCCCcEEEEEECCCceEeEE
Q 035482 207 NGRLHWCTWPR--YRGPSRLLISFDIADEQFRVV 238 (378)
Q Consensus 207 ~G~lyw~~~~~--~~~~~~~il~fD~~~e~~~~i 238 (378)
++.+|...... .......+.+||+.+.+|+.+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC
Confidence 34566655543 122346799999999999988
No 62
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.81 E-value=54 Score=30.19 Aligned_cols=113 Identities=10% Similarity=0.149 Sum_probs=71.5
Q ss_pred CcEEEEEECCCceEeEE---cCCCccCcceeEEEEeCCeEEEEEeCCCCc-eEEEEeeCCCCCceeeEEEEccCCCCCcc
Q 035482 222 SRLLISFDIADEQFRVV---EKPDELHRIHYDLVNLGGCLSAAVPCSSGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLE 297 (378)
Q Consensus 222 ~~~il~fD~~~e~~~~i---~lP~~~~~~~~~l~~~~G~L~~v~~~~~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 297 (378)
.+.|..||++....... .++++.+. +....--+|+++++....... .+|..+.. .++-....+|.. +|+++.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~t-lP~dF~ 241 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDT-LPEDFT 241 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeecc-CccccC
Confidence 46777777776555432 34443322 222334478988887665555 77877653 356666777765 565432
Q ss_pred ccccCccccccccccCceeEEEEEeeCCcEEEEEcCC--e--EEEEeCCCCcEEEEEEe
Q 035482 298 QDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCR--A--LVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~~--~--l~~yd~~t~~~~~v~~~ 352 (378)
......-|.+..||+.|...+.+ . ++.-|..+++++-+...
T Consensus 242 --------------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 242 --------------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred --------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 22456778888999999987632 2 56669999998887753
No 63
>smart00284 OLF Olfactomedin-like domains.
Probab=77.95 E-value=49 Score=29.28 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.1
Q ss_pred cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEE-cCCC-cc---------CcceeEEEEeCCeEEEEEeCCCC
Q 035482 199 EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVV-EKPD-EL---------HRIHYDLVNLGGCLSAAVPCSSG 267 (378)
Q Consensus 199 ~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~-~~---------~~~~~~l~~~~G~L~~v~~~~~~ 267 (378)
.....|+-||.+|+.... ...|+.||+.+++-... .||. .. ....+.|++=+..|.++....+.
T Consensus 75 ~GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 75 QGTGVVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccccEEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 345678999999997765 57899999999998643 4674 11 12345677777778877765443
No 64
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.25 E-value=64 Score=30.20 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=35.1
Q ss_pred eEEEEEEcCCC--CeEEeCcccc-eeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCc--eEe
Q 035482 175 SEVQILTLGSQ--EWRSLGQVNY-HMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADE--QFR 236 (378)
Q Consensus 175 ~~~~Vyss~~~--~W~~~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e--~~~ 236 (378)
-.+..++..+| .|+.....+. ......+++..+|.+|.-.. ...+.++|+.+. .|+
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~------~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA------GGKLVALDLQTGQPLWE 215 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC------CCEEEEEEccCCCEeee
Confidence 35677888877 6876443221 12233566778887775443 368999999764 454
No 65
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.78 E-value=5.1 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=19.1
Q ss_pred CCcEEECCeEEEEeccCCCCCCcEEEEEECCC
Q 035482 201 PSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD 232 (378)
Q Consensus 201 ~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~ 232 (378)
.++++.+|.+|....+ +.+.+||.+|
T Consensus 15 ~~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 5568889999998876 8999999875
No 66
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=75.77 E-value=67 Score=29.72 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=62.7
Q ss_pred CcEEEC--CeEEEEeccCCCCCCcEEEEEECCCceEeEE---cCCC--cc-C---cceeEEEEe---CCeEEEEEeCC--
Q 035482 202 SQVLVN--GRLHWCTWPRYRGPSRLLISFDIADEQFRVV---EKPD--EL-H---RIHYDLVNL---GGCLSAAVPCS-- 265 (378)
Q Consensus 202 ~~v~~~--G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i---~lP~--~~-~---~~~~~l~~~---~G~L~~v~~~~-- 265 (378)
.+++.+ |.+||.... +.|...|++.+.=... ++-. +. . ....++..+ .|+|+++-...
T Consensus 188 ~~~~~~~~~~~~F~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecC------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 344443 578888766 8999999988764333 2211 10 0 112355555 46777654321
Q ss_pred ----CCc-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCc-EEEE-Ec-CCeEE
Q 035482 266 ----SGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGE-ILLE-YK-CRALV 337 (378)
Q Consensus 266 ----~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-vl~~-~~-~~~l~ 337 (378)
+.. +||+++-.- =.+..+|++.- .+.-+.+.++.+ .|+. .. ++.|+
T Consensus 262 gsHKdpgteVWv~D~~t----~krv~Ri~l~~----------------------~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKT----HKRVARIPLEH----------------------PIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp T-TTS-EEEEEEEETTT----TEEEEEEEEEE----------------------EESEEEEESSSS-EEEEEETTTTEEE
T ss_pred CCccCCceEEEEEECCC----CeEEEEEeCCC----------------------ccceEEEccCCCcEEEEEcCCCCeEE
Confidence 112 999997532 24566776521 122456666665 4433 33 56799
Q ss_pred EEeCCCCcEEE
Q 035482 338 SYNPRNEMFKD 348 (378)
Q Consensus 338 ~yd~~t~~~~~ 348 (378)
.||..|++..+
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999997544
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=74.26 E-value=77 Score=29.66 Aligned_cols=133 Identities=9% Similarity=0.079 Sum_probs=67.2
Q ss_pred EEEEEEcCCC--CeEEeCcccce------e-ecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCc--eEeEEcCCCcc
Q 035482 176 EVQILTLGSQ--EWRSLGQVNYH------M-LEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADE--QFRVVEKPDEL 244 (378)
Q Consensus 176 ~~~Vyss~~~--~W~~~~~~p~~------~-~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e--~~~~i~lP~~~ 244 (378)
.+..++..+| .|+.....+.. . .....++..+|.+|..... +.+.++|.++. .|.. +.+.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~-~~~~-- 271 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKR-DASS-- 271 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEee-ccCC--
Confidence 4556666666 67643211110 0 1234567788999987655 68999999764 4433 2221
Q ss_pred CcceeEEEEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeC
Q 035482 245 HRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKN 324 (378)
Q Consensus 245 ~~~~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (378)
....+..+|++++... ...|..++....+..|.... +.-. ....|+. .+
T Consensus 272 ---~~~p~~~~~~vyv~~~---~G~l~~~d~~tG~~~W~~~~-~~~~----------------------~~ssp~i--~g 320 (377)
T TIGR03300 272 ---YQGPAVDDNRLYVTDA---DGVVVALDRRSGSELWKNDE-LKYR----------------------QLTAPAV--VG 320 (377)
T ss_pred ---ccCceEeCCEEEEECC---CCeEEEEECCCCcEEEcccc-ccCC----------------------ccccCEE--EC
Confidence 1122334555554421 11343443322234554321 1000 0011111 24
Q ss_pred CcEEEEEcCCeEEEEeCCCCcEEE
Q 035482 325 GEILLEYKCRALVSYNPRNEMFKD 348 (378)
Q Consensus 325 g~vl~~~~~~~l~~yd~~t~~~~~ 348 (378)
+.+++...++.++.+|.++++...
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEE
Confidence 566666667889999999887654
No 68
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.80 E-value=9 Score=21.37 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCeEEEEeCCCCcEEE
Q 035482 324 NGEILLEYKCRALVSYNPRNEMFKD 348 (378)
Q Consensus 324 ~g~vl~~~~~~~l~~yd~~t~~~~~ 348 (378)
+|.+++...++.++++|.++++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 5556666667899999999988654
No 69
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=73.74 E-value=84 Score=29.88 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=76.0
Q ss_pred eEEEEEEcCCC-----CeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCce---EeEEcCCCccCc
Q 035482 175 SEVQILTLGSQ-----EWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQ---FRVVEKPDELHR 246 (378)
Q Consensus 175 ~~~~Vyss~~~-----~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~---~~~i~lP~~~~~ 246 (378)
..+.+.+..++ .|+.+...-... ....-+.++.+|.++.. ....+.|++.|+.+-. |..+-+|.....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~--~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGV--EYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS---EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCce--EEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCce
Confidence 56777777764 677654211111 11222457788887753 3445799999998765 554333332111
Q ss_pred ceeEEEEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEE-eeCC
Q 035482 247 IHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCL-LKNG 325 (378)
Q Consensus 247 ~~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g 325 (378)
.-..+...++.|.+....+....|.++.-. ..|.... +.+ |.. ..+..+.. ..+.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~---~~~~~~~-~~~--p~~------------------g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLD---DGKESRE-IPL--PEA------------------GSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEETT----TEEEEE-EES--SSS------------------SEEEEEES-TT-S
T ss_pred eEEEEEEECCEEEEEEEECCccEEEEEECC---CCcEEee-ecC--Ccc------------------eEEeccCCCCCCC
Confidence 223444557777666543332377777653 2343332 322 110 00111111 1244
Q ss_pred cEEEEEc----CCeEEEEeCCCCcEEEEE
Q 035482 326 EILLEYK----CRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 326 ~vl~~~~----~~~l~~yd~~t~~~~~v~ 350 (378)
++.|... ...++.||+++++.+.+.
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 5656543 467999999999998875
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=72.56 E-value=65 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.565 Sum_probs=27.3
Q ss_pred CCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCC
Q 035482 207 NGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPD 242 (378)
Q Consensus 207 ~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~ 242 (378)
+|.|||.... ...|..+|+.+.+...+.+|.
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~ 41 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPG 41 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSS
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCC
Confidence 6999999866 579999999999999888876
No 71
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.50 E-value=97 Score=30.82 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred CCCcEEECCeEEEEeccCCCCCCcEEEEEECCC--ceEeE
Q 035482 200 APSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD--EQFRV 237 (378)
Q Consensus 200 ~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~--e~~~~ 237 (378)
..++++.+|.+|..... ..|.++|..| +.|+.
T Consensus 62 ~stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKY 95 (527)
T ss_pred ccCCEEECCEEEEECCC------CcEEEEECCCCceeeEe
Confidence 45678999999987654 5899999976 56664
No 72
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=72.48 E-value=6.1 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=18.7
Q ss_pred ceEEEEcccccceeeCCCCCCCC
Q 035482 112 NRLYVYNPFTRNYVELPKSTEFQ 134 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~ 134 (378)
+.+++.||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 57899999999999997655443
No 73
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.60 E-value=18 Score=33.42 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=51.5
Q ss_pred eEEEEEEcCCC--CeEEeCcccceeecCCCcEEECCeEEEEeccCCCCC-----CcEEEEEECCCceEeEE--cCCCc
Q 035482 175 SEVQILTLGSQ--EWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGP-----SRLLISFDIADEQFRVV--EKPDE 243 (378)
Q Consensus 175 ~~~~Vyss~~~--~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~-----~~~il~fD~~~e~~~~i--~lP~~ 243 (378)
....+.++... .|.+++..|-....+...++++|.||.........+ -+.+..||..+++|..+ ..|..
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g 135 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG 135 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccc
Confidence 34556666654 899999888777677888999999999986632222 24688999999999987 45653
No 74
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.44 E-value=68 Score=27.42 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=75.5
Q ss_pred eEEEEEEcCCC--CeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeE-EcCCCccCcceeEE
Q 035482 175 SEVQILTLGSQ--EWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRV-VEKPDELHRIHYDL 251 (378)
Q Consensus 175 ~~~~Vyss~~~--~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~-i~lP~~~~~~~~~l 251 (378)
-.+..++..+| .|+..-..+... ....++..+|.+|..... ..|.++|..+.+-.. ..++...... .
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~v~~~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~---~ 72 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGG-PVATAVPDGGRVYVASGD------GNLYALDAKTGKVLWRFDLPGPISGA---P 72 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSS-EEETEEEETTEEEEEETT------SEEEEEETTTSEEEEEEECSSCGGSG---E
T ss_pred CEEEEEECCCCCEEEEEECCCCCCC-ccceEEEeCCEEEEEcCC------CEEEEEECCCCCEEEEeeccccccce---e
Confidence 35678888887 788632111100 111244578888887544 799999986654322 3444422211 3
Q ss_pred EEeCCeEEEEEeCCCCceEEEEe-eCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEE
Q 035482 252 VNLGGCLSAAVPCSSGKEIWVMK-EYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLE 330 (378)
Q Consensus 252 ~~~~G~L~~v~~~~~~~~iW~l~-~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~ 330 (378)
...+|.+++.... ..|+.++ ..| +..|.....-.. +.... ....+. + .++.+++.
T Consensus 73 ~~~~~~v~v~~~~---~~l~~~d~~tG-~~~W~~~~~~~~--~~~~~----------------~~~~~~-~-~~~~~~~~ 128 (238)
T PF13360_consen 73 VVDGGRVYVGTSD---GSLYALDAKTG-KVLWSIYLTSSP--PAGVR----------------SSSSPA-V-DGDRLYVG 128 (238)
T ss_dssp EEETTEEEEEETT---SEEEEEETTTS-CEEEEEEE-SSC--TCSTB------------------SEEE-E-ETTEEEEE
T ss_pred eecccccccccce---eeeEecccCCc-ceeeeecccccc--ccccc----------------cccCce-E-ecCEEEEE
Confidence 5556777666521 1677776 334 667763222111 00000 001111 1 13445555
Q ss_pred EcCCeEEEEeCCCCcEEEEE
Q 035482 331 YKCRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 331 ~~~~~l~~yd~~t~~~~~v~ 350 (378)
...+.++.+|+++++...-.
T Consensus 129 ~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 129 TSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp ETCSEEEEEETTTTEEEEEE
T ss_pred eccCcEEEEecCCCcEEEEe
Confidence 55788999999999875543
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=69.23 E-value=96 Score=29.74 Aligned_cols=101 Identities=13% Similarity=0.200 Sum_probs=57.7
Q ss_pred CcEEEEEECCCceEeEEcCCCccCcceeEEEEe--CCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCcccc
Q 035482 222 SRLLISFDIADEQFRVVEKPDELHRIHYDLVNL--GGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQD 299 (378)
Q Consensus 222 ~~~il~fD~~~e~~~~i~lP~~~~~~~~~l~~~--~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~ 299 (378)
...+.+||+.+.+...+..|.+.........+. +|...++.. ....|-.|-- -..+|.-.+.|+=
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--~~G~I~lLha--kT~eli~s~KieG--------- 345 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--NNGHIHLLHA--KTKELITSFKIEG--------- 345 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc--cCceEEeehh--hhhhhhheeeecc---------
Confidence 578999999999999998887443222222221 333222211 1113434422 1345655554432
Q ss_pred ccCccccccccccCceeEEEEEeeCCcEEEEE-cCCeEEEEeCCCCcEEEEE
Q 035482 300 LSQSFRDSKFFRNRSFVRVLCLLKNGEILLEY-KCRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~-~~~~l~~yd~~t~~~~~v~ 350 (378)
.+.-+.+..+|+.++.. ..+.++.+|+++++.....
T Consensus 346 ---------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 346 ---------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred ---------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 24445555677666554 5678999999999765543
No 76
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=68.95 E-value=8.8 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.523 Sum_probs=17.0
Q ss_pred ceEEEEEEcCCCCeEEeCcc
Q 035482 174 KSEVQILTLGSQEWRSLGQV 193 (378)
Q Consensus 174 ~~~~~Vyss~~~~W~~~~~~ 193 (378)
...+++|+.++.+|+.+..+
T Consensus 29 ~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 29 SNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cceeEEEECCCCEEeecCCC
Confidence 46799999999999987654
No 77
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=68.36 E-value=1.1e+02 Score=28.89 Aligned_cols=188 Identities=16% Similarity=0.186 Sum_probs=90.7
Q ss_pred CCceEEEEccccccee-eCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeE
Q 035482 110 TKNRLYVYNPFTRNYV-ELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWR 188 (378)
Q Consensus 110 ~~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~ 188 (378)
..+.+.|.+..|++.. ++|... ....++.+.+. +.|-.+. . ++ ..+.+++..++.
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~D-gr~~yv~-~--rd-------------g~vsviD~~~~~-- 69 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGG-----APHAGLKFSPD-GRYLYVA-N--RD-------------GTVSVIDLATGK-- 69 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT--SSEEEEE-E--TT-------------SEEEEEETTSSS--
T ss_pred CCCEEEEEECCCCeEEEEEcCCC-----CceeEEEecCC-CCEEEEE-c--CC-------------CeEEEEECCccc--
Confidence 4578899999998754 456532 12333444443 3453332 1 11 357888888875
Q ss_pred EeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCC-ceEeEEcCCCc---cC-cceeEEEEeCCeEEEEEe
Q 035482 189 SLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD-EQFRVVEKPDE---LH-RIHYDLVNLGGCLSAAVP 263 (378)
Q Consensus 189 ~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~-e~~~~i~lP~~---~~-~~~~~l~~~~G~L~~v~~ 263 (378)
.+...+.......-++.-+|+.-+.+.. .++.+..+|.++ +....|+.... .. ..-..+....++-.++..
T Consensus 70 ~v~~i~~G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 70 VVATIKVGGNPRGIAVSPDGKYVYVANY----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp EEEEEE-SSEEEEEEE--TTTEEEEEEE----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred EEEEEecCCCcceEEEcCCCCEEEEEec----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 2222221111111223346764444432 257999999877 45556655431 11 112234444444433333
Q ss_pred CCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEE--cCCeEEEEeC
Q 035482 264 CSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEY--KCRALVSYNP 341 (378)
Q Consensus 264 ~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~--~~~~l~~yd~ 341 (378)
..+..+||+++-...+....+ .+... .+..-.++..+|+.++.. ...++...|.
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~--~i~~g----------------------~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVT--TIKVG----------------------RFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEE--EEE------------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred EccCCeEEEEEecccccccee--eeccc----------------------ccccccccCcccceeeecccccceeEEEee
Confidence 334449999863221222222 22221 122334555677777663 3567899999
Q ss_pred CCCcEEEE
Q 035482 342 RNEMFKDL 349 (378)
Q Consensus 342 ~t~~~~~v 349 (378)
+++++..+
T Consensus 202 ~~~k~v~~ 209 (369)
T PF02239_consen 202 KTGKLVAL 209 (369)
T ss_dssp TTTEEEEE
T ss_pred ccceEEEE
Confidence 99887664
No 78
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=66.77 E-value=46 Score=30.49 Aligned_cols=84 Identities=14% Similarity=0.296 Sum_probs=47.4
Q ss_pred cCCCcEEE-CCeEEEEeccCCCCCC--cEEEEEECC-CceEeEEc-CCCccCcceeEEEEe-CCeEEEEEeCCCCc-eEE
Q 035482 199 EAPSQVLV-NGRLHWCTWPRYRGPS--RLLISFDIA-DEQFRVVE-KPDELHRIHYDLVNL-GGCLSAAVPCSSGK-EIW 271 (378)
Q Consensus 199 ~~~~~v~~-~G~lyw~~~~~~~~~~--~~il~fD~~-~e~~~~i~-lP~~~~~~~~~l~~~-~G~L~~v~~~~~~~-~iW 271 (378)
...++|.. +|.|-+-......... ..++.|-.. ...|..-. .|+ ..+..+.+++. +|+|.|+..+..+. .++
T Consensus 122 gGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~-~gC~~psv~EWe~gkLlM~~~c~~g~rrVY 200 (310)
T PF13859_consen 122 GGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSP-AGCSDPSVVEWEDGKLLMMTACDDGRRRVY 200 (310)
T ss_dssp -SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-----TT-EEEEEEEE-TTEEEEEEE-TTS---EE
T ss_pred CCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCC-CCcceEEEEeccCCeeEEEEecccceEEEE
Confidence 44566666 8888776544222222 567778776 67886532 222 34457899999 89999999988875 787
Q ss_pred EEeeCCCCCceeeE
Q 035482 272 VMKEYDVKESWIKE 285 (378)
Q Consensus 272 ~l~~~~~~~~W~~~ 285 (378)
.-.+.| .+|+..
T Consensus 201 eS~DmG--~tWtea 212 (310)
T PF13859_consen 201 ESGDMG--TTWTEA 212 (310)
T ss_dssp EESSTT--SS-EE-
T ss_pred EEcccc--eehhhc
Confidence 776655 689854
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.55 E-value=1.3e+02 Score=28.92 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=84.8
Q ss_pred cccccceeeC--CCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE-eCccc
Q 035482 118 NPFTRNYVEL--PKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS-LGQVN 194 (378)
Q Consensus 118 NP~T~~~~~L--P~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~-~~~~p 194 (378)
+|-++-|.+. |+..... .....+.|.|.. .|.++... ...+.+|++.+.+=+. ...+-
T Consensus 8 t~e~~~w~~~~~~~~~ke~--~~vssl~fsp~~-P~d~aVt~----------------S~rvqly~~~~~~~~k~~srFk 68 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEH--NSVSSLCFSPKH-PYDFAVTS----------------SVRVQLYSSVTRSVRKTFSRFK 68 (487)
T ss_pred Cccchhhhhhccccccccc--CcceeEecCCCC-CCceEEec----------------ccEEEEEecchhhhhhhHHhhc
Confidence 4556666654 3333222 334445666653 33333322 1789999999864332 21111
Q ss_pred ceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceE-eEE---cCCCccCcceeEEEEeCCeEEEEEeCCCCc-e
Q 035482 195 YHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQF-RVV---EKPDELHRIHYDLVNLGGCLSAAVPCSSGK-E 269 (378)
Q Consensus 195 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~-~~i---~lP~~~~~~~~~l~~~~G~L~~v~~~~~~~-~ 269 (378)
-. ..+..+.-+|.|...+.. .+.+-.||+.+... +.+ ..|. ...+...-++ ..++...++.. .
T Consensus 69 ~~--v~s~~fR~DG~LlaaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv----~~~~f~~~d~-t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 69 DV--VYSVDFRSDGRLLAAGDE-----SGHVKVFDMKSRVILRQLYAHQAPV----HVTKFSPQDN-TMLVSGSDDKVVK 136 (487)
T ss_pred cc--eeEEEeecCCeEEEccCC-----cCcEEEeccccHHHHHHHhhccCce----eEEEecccCC-eEEEecCCCceEE
Confidence 00 112223446999877665 68999999766322 122 2222 0112222333 44444444444 9
Q ss_pred EEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeC-CcEEEEEc-CCeEEEEeCCCCc
Q 035482 270 IWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKN-GEILLEYK-CRALVSYNPRNEM 345 (378)
Q Consensus 270 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~vl~~~~-~~~l~~yd~~t~~ 345 (378)
+|.+... . + ...+.- . ..+++-..+..- +.+++..+ ++.+-.||.++..
T Consensus 137 ~~d~s~a---~--v-~~~l~~--h-------------------tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 137 YWDLSTA---Y--V-QAELSG--H-------------------TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT 187 (487)
T ss_pred EEEcCCc---E--E-EEEecC--C-------------------cceeEeeccccCCCeEEEecCCCceEEEEEeccCC
Confidence 9998752 2 2 222211 0 023444444443 34555544 5678889999886
No 80
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=64.46 E-value=93 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=24.4
Q ss_pred EECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCC
Q 035482 205 LVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPD 242 (378)
Q Consensus 205 ~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~ 242 (378)
.+||.+ ++... ..+.+.|+.|.++..+|.|.
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~ 33 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPK 33 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCC
Confidence 578888 55432 58999999999999998665
No 81
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.80 E-value=1.1e+02 Score=27.30 Aligned_cols=144 Identities=14% Similarity=0.200 Sum_probs=76.2
Q ss_pred CceEEEEEEcCCCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCc-eEeEEcCCCccCcceeEE
Q 035482 173 GKSEVQILTLGSQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADE-QFRVVEKPDELHRIHYDL 251 (378)
Q Consensus 173 ~~~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e-~~~~i~lP~~~~~~~~~l 251 (378)
....+..|+..+|.=.....+|... +......+++.+|-++.. .+..+.||..+- .-..++.|. ...=|
T Consensus 66 G~S~l~~~d~~tg~~~~~~~l~~~~-FgEGit~~~d~l~qLTWk-----~~~~f~yd~~tl~~~~~~~y~~----EGWGL 135 (264)
T PF05096_consen 66 GQSSLRKVDLETGKVLQSVPLPPRY-FGEGITILGDKLYQLTWK-----EGTGFVYDPNTLKKIGTFPYPG----EGWGL 135 (264)
T ss_dssp TEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESS-----SSEEEEEETTTTEEEEEEE-SS----S--EE
T ss_pred CcEEEEEEECCCCcEEEEEECCccc-cceeEEEECCEEEEEEec-----CCeEEEEccccceEEEEEecCC----cceEE
Confidence 3478999999999755444444433 233456789999999988 689999999863 334455553 11122
Q ss_pred EEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEE
Q 035482 252 VNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEY 331 (378)
Q Consensus 252 ~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~ 331 (378)
..-+.+|.+... ...|+.++- .......+|.... ++ .|.. .+-=+-.. +|.|+-..
T Consensus 136 t~dg~~Li~SDG---S~~L~~~dP----~~f~~~~~i~V~~-~g------~pv~---------~LNELE~i-~G~IyANV 191 (264)
T PF05096_consen 136 TSDGKRLIMSDG---SSRLYFLDP----ETFKEVRTIQVTD-NG------RPVS---------NLNELEYI-NGKIYANV 191 (264)
T ss_dssp EECSSCEEEE-S---SSEEEEE-T----TT-SEEEEEE-EE-TT------EE------------EEEEEEE-TTEEEEEE
T ss_pred EcCCCEEEEECC---ccceEEECC----cccceEEEEEEEE-CC------EECC---------CcEeEEEE-cCEEEEEe
Confidence 222233333321 126666652 2345555555421 00 0110 01111111 67766654
Q ss_pred -cCCeEEEEeCCCCcEEEEE
Q 035482 332 -KCRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 332 -~~~~l~~yd~~t~~~~~v~ 350 (378)
....++.-|++|+++...-
T Consensus 192 W~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEE
Confidence 3577999999999988754
No 82
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.87 E-value=29 Score=32.06 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=67.4
Q ss_pred eEEEEEEcCCCCeEEeCc-ccceeecCCCcEEECC-eEEEEeccCC-----------------------------C----
Q 035482 175 SEVQILTLGSQEWRSLGQ-VNYHMLEAPSQVLVNG-RLHWCTWPRY-----------------------------R---- 219 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~-~p~~~~~~~~~v~~~G-~lyw~~~~~~-----------------------------~---- 219 (378)
..++.|++.+++|..+.. .|.... ...++..++ .+|......+ .
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~-G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLV-GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeeEEecCCCChhheeccccccccc-cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 457899999999998873 344432 233344444 7777653310 0
Q ss_pred -CCCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCC-C--c-eEEEEeeCCCCCceeeEEEEcc
Q 035482 220 -GPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSS-G--K-EIWVMKEYDVKESWIKEYNIGI 290 (378)
Q Consensus 220 -~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~-~--~-~iW~l~~~~~~~~W~~~~~i~~ 290 (378)
--...+++||+.+++|+..- .|..-.. ....+.-+++|.++...-. . . ++|+.+--++...|.+.-....
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~a-Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNA-GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCcc-CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 01246899999999999884 6652111 1223333456777765421 1 2 7777665545678988755433
No 83
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=62.50 E-value=13 Score=21.86 Aligned_cols=24 Identities=4% Similarity=-0.061 Sum_probs=18.2
Q ss_pred EEEEEcCCeEEEEeCCCCcEEEEE
Q 035482 327 ILLEYKCRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 327 vl~~~~~~~l~~yd~~t~~~~~v~ 350 (378)
+++...++.++++|.+|++...-.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEee
Confidence 455555788999999999876654
No 84
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=61.39 E-value=1.4e+02 Score=27.87 Aligned_cols=111 Identities=9% Similarity=0.074 Sum_probs=61.1
Q ss_pred cEEECCeEEEEeccCCCCCCcEEEEEECCCce--EeEEcCC--CccCcceeEEEEeCCeEEEEEeCCCCceEEEEeeCCC
Q 035482 203 QVLVNGRLHWCTWPRYRGPSRLLISFDIADEQ--FRVVEKP--DELHRIHYDLVNLGGCLSAAVPCSSGKEIWVMKEYDV 278 (378)
Q Consensus 203 ~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~--~~~i~lP--~~~~~~~~~l~~~~G~L~~v~~~~~~~~iW~l~~~~~ 278 (378)
++..+|++|....+ +.|.+||.++.+ |+.-... .... .-.+.-+|++++-.... +++.+++...
T Consensus 64 ~~~~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~~~~~~~---~~~~~~~G~i~~g~~~g---~~y~ld~~~G 131 (370)
T COG1520 64 PADGDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLGAVAQLS---GPILGSDGKIYVGSWDG---KLYALDASTG 131 (370)
T ss_pred cEeeCCeEEEecCC------CcEEEEeCCCCcEEecccCcCcceecc---CceEEeCCeEEEecccc---eEEEEECCCC
Confidence 58999999998554 589999998865 6544332 1111 11122266654443221 5666665222
Q ss_pred CCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEcCCeEEEEeCCCCcEEEE
Q 035482 279 KESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYKCRALVSYNPRNEMFKDL 349 (378)
Q Consensus 279 ~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~~~~l~~yd~~t~~~~~v 349 (378)
+..|.....- . + ....+ .+..++.+++...+++++..|.++++.+..
T Consensus 132 ~~~W~~~~~~--~-~--------------------~~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 132 TLVWSRNVGG--S-P--------------------YYASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred cEEEEEecCC--C-e--------------------EEecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 5566544321 0 0 00011 112255555555668899999998876554
No 85
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.22 E-value=1.2e+02 Score=26.57 Aligned_cols=111 Identities=16% Similarity=0.269 Sum_probs=60.2
Q ss_pred eCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEE
Q 035482 99 CKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQ 178 (378)
Q Consensus 99 ~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~ 178 (378)
.+|--|+..+ ....+-+|||..+...+-=...... ..-+++.+|.+ |+... + ....+.
T Consensus 27 ~dGnY~ltcG-sdrtvrLWNp~rg~liktYsghG~E--VlD~~~s~Dns----kf~s~-----G----------gDk~v~ 84 (307)
T KOG0316|consen 27 VDGNYCLTCG-SDRTVRLWNPLRGALIKTYSGHGHE--VLDAALSSDNS----KFASC-----G----------GDKAVQ 84 (307)
T ss_pred cCCCEEEEcC-CCceEEeecccccceeeeecCCCce--eeecccccccc----ccccC-----C----------CCceEE
Confidence 4565666654 4578899999988766432211100 11222233332 21110 1 116788
Q ss_pred EEEcCCC----CeEEeCc-ccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCC
Q 035482 179 ILTLGSQ----EWRSLGQ-VNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPD 242 (378)
Q Consensus 179 Vyss~~~----~W~~~~~-~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~ 242 (378)
+++..+| .||.... .-.--....++|.+.|.+ ...|-++|..+..+.+|+.=.
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-----------D~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-----------DSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccc-----------cceeEEEEcccCCCCccchhh
Confidence 9999998 5654331 111111445666766644 357778888888777776544
No 86
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=60.15 E-value=19 Score=26.11 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCeEEEEeCCCCcEEEEE
Q 035482 333 CRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 333 ~~~l~~yd~~t~~~~~v~ 350 (378)
.++++.||++|++.+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 378999999999988764
No 87
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=59.89 E-value=1.1e+02 Score=29.86 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=61.4
Q ss_pred EEEEEEcCCCCeEEeC--cccceeecCCCcEEECCeEEEEeccCC------C--------CCCcEEEEEECCCceEeEEc
Q 035482 176 EVQILTLGSQEWRSLG--QVNYHMLEAPSQVLVNGRLHWCTWPRY------R--------GPSRLLISFDIADEQFRVVE 239 (378)
Q Consensus 176 ~~~Vyss~~~~W~~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~------~--------~~~~~il~fD~~~e~~~~i~ 239 (378)
.+...++++=+|.... ..+..+....+++.+++++|.+..--+ . .-...+-++|++++.|..+.
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 4667788888998764 111112234577888999998764310 0 11347899999999998875
Q ss_pred CCCcc------CcceeEEEEeCCeEEEEEeCCC-------C-c--eEEEEee
Q 035482 240 KPDEL------HRIHYDLVNLGGCLSAAVPCSS-------G-K--EIWVMKE 275 (378)
Q Consensus 240 lP~~~------~~~~~~l~~~~G~L~~v~~~~~-------~-~--~iW~l~~ 275 (378)
+-... .+.....+..+.+|++-...+. . . ++|.|+.
T Consensus 311 ~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdT 362 (830)
T KOG4152|consen 311 MDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDT 362 (830)
T ss_pred eccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcc
Confidence 43311 1122345667788888765431 1 1 8888764
No 88
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=59.66 E-value=1.4e+02 Score=27.23 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=48.0
Q ss_pred eEEEEEEcCC-CCeEEeCcccceeecCCCcEEE--CCe-EEEEeccCCCCCCcEEEEEECC-CceEeEEc-CCCccCcce
Q 035482 175 SEVQILTLGS-QEWRSLGQVNYHMLEAPSQVLV--NGR-LHWCTWPRYRGPSRLLISFDIA-DEQFRVVE-KPDELHRIH 248 (378)
Q Consensus 175 ~~~~Vyss~~-~~W~~~~~~p~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~il~fD~~-~e~~~~i~-lP~~~~~~~ 248 (378)
..+.+|+..+ +.++.+...+.. .....+.+ +|. +|..... ...|.+|++. +.++..+. .|... ..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~--~p 82 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPG--SP 82 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCC--Cc
Confidence 4567777764 577665543321 12223333 454 5554433 4788889886 44555442 22211 12
Q ss_pred eEEEEe-CCeEEEEEeCCCCc-eEEEEeeCC
Q 035482 249 YDLVNL-GGCLSAAVPCSSGK-EIWVMKEYD 277 (378)
Q Consensus 249 ~~l~~~-~G~L~~v~~~~~~~-~iW~l~~~~ 277 (378)
..+... +|+..++....... .+|.+++.+
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 233333 67665555443444 788886543
No 89
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.59 E-value=1.2e+02 Score=29.29 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=24.8
Q ss_pred EeeCCcEEEEEcCCeEEEEeCCCCcEEEEEEe
Q 035482 321 LLKNGEILLEYKCRALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 321 ~~~~g~vl~~~~~~~l~~yd~~t~~~~~v~~~ 352 (378)
...||+-++....+.++.||++|.+++++.+.
T Consensus 274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred cCCCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 33477655555557799999999999999864
No 90
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=56.49 E-value=36 Score=25.63 Aligned_cols=40 Identities=23% Similarity=0.602 Sum_probs=29.9
Q ss_pred ceEEEEccccc-ceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEE
Q 035482 112 NRLYVYNPFTR-NYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKID 157 (378)
Q Consensus 112 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 157 (378)
..++++||.|+ .|. |.++ ....+.+.+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~----~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK----HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCC----CceeEEEEecCCCcEEEEEEec
Confidence 57899999986 665 3332 2356778889999999999864
No 91
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=56.04 E-value=1.5e+02 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=24.8
Q ss_pred CCCcEEECCeEEEEeccCCCCCCcEEEEEECCC--ceEeE
Q 035482 200 APSQVLVNGRLHWCTWPRYRGPSRLLISFDIAD--EQFRV 237 (378)
Q Consensus 200 ~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~--e~~~~ 237 (378)
...+++.+|.+|..... ..+.++|..+ ..|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCC------CcEEEEECCCChhhcee
Confidence 45678999999987655 7899999975 45654
No 92
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=51.71 E-value=62 Score=25.03 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCcEEEEEEe--CC--CCeEEEEEEeCCccccC
Q 035482 333 CRALVSYNPRNEMFKDLLLH--GT--PNLFEASVHEGSLSWID 371 (378)
Q Consensus 333 ~~~l~~yd~~t~~~~~v~~~--~~--~~~~~~~~y~~sl~~~~ 371 (378)
...+++||+++.+++.+..+ .. .....-..|..+|.-+.
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~ 61 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVS 61 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEE
Confidence 36799999999999999985 11 12233457888886654
No 93
>PF13013 F-box-like_2: F-box-like domain
Probab=51.08 E-value=7.1 Score=29.53 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHhccCCcccccccccchh
Q 035482 2 EYLPQEIVLDILSRLPVTSLLHFKLVCK 29 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK 29 (378)
.+||+||+..|+..-....+...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 5799999999999999888766665555
No 94
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=50.53 E-value=43 Score=25.45 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=30.0
Q ss_pred ceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEE
Q 035482 112 NRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKID 157 (378)
Q Consensus 112 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 157 (378)
..+++.||.|+.| ||..... .....+.+.+++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W--~P~~~~~-~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKW--VPAGGGS-QGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcE--EcCCCCC-CCcceEEEEEcCCCCEEEEEEee
Confidence 4678999999985 5543311 12456677788888999999753
No 95
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=49.02 E-value=2.2e+02 Score=26.32 Aligned_cols=148 Identities=10% Similarity=0.150 Sum_probs=76.9
Q ss_pred eEEEEEEcCCCC--eEEeCcccceeecCCCcEEE--CC-eEEEEeccCCCCCCcEEEEEECC--CceEeEEc----CCCc
Q 035482 175 SEVQILTLGSQE--WRSLGQVNYHMLEAPSQVLV--NG-RLHWCTWPRYRGPSRLLISFDIA--DEQFRVVE----KPDE 243 (378)
Q Consensus 175 ~~~~Vyss~~~~--W~~~~~~p~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~~~il~fD~~--~e~~~~i~----lP~~ 243 (378)
..+.+|+...+. ...............+.+.+ +| .+|..... ...|.+|++. +..+..+. +|..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----SNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----CCcEEEEeecccCCceeEEEEeeecccc
Confidence 578888887765 54322110000011122222 44 56666654 5788888887 66665542 4442
Q ss_pred cCc--ceeEEEEe-CCeEEEEEeCCCCc-eEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEE
Q 035482 244 LHR--IHYDLVNL-GGCLSAAVPCSSGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVL 319 (378)
Q Consensus 244 ~~~--~~~~l~~~-~G~L~~v~~~~~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (378)
... ....+... +|+..++.-..... .++.++.. .+.-++...+... +..-+-+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~--~g~l~~~~~~~~~---------------------G~~Pr~~ 297 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA--TGTLTLVQTVPTG---------------------GKFPRHF 297 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT--TTTEEEEEEEEES---------------------SSSEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC--CCceEEEEEEeCC---------------------CCCccEE
Confidence 211 22344433 78766665544333 55555332 2344444444321 1123456
Q ss_pred EEeeCCcEEEEEc--CCeEEEE--eCCCCcEEEEE
Q 035482 320 CLLKNGEILLEYK--CRALVSY--NPRNEMFKDLL 350 (378)
Q Consensus 320 ~~~~~g~vl~~~~--~~~l~~y--d~~t~~~~~v~ 350 (378)
.+..+|+.+++.. .+.+..| |.++++++.+.
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 6677899888764 3556655 77899998886
No 96
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=47.98 E-value=13 Score=34.14 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHhccCC--------cccccccccchhhhhhhccC
Q 035482 2 EYLPQEIVLDILSRLP--------VTSLLHFKLVCKAWLNTAQN 37 (378)
Q Consensus 2 ~~LP~Dll~eIL~rLP--------~~~l~r~r~VcK~W~~li~~ 37 (378)
+.||.+++.+|+.|.. -+++..+..|||.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3789999999999886 24789999999999997654
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=47.85 E-value=2.6e+02 Score=26.79 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=69.6
Q ss_pred EEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCccCcceeE-EEEeCCeEEEEEeCCCCc-eEEEEeeCCCCCc
Q 035482 204 VLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYD-LVNLGGCLSAAVPCSSGK-EIWVMKEYDVKES 281 (378)
Q Consensus 204 v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~-l~~~~G~L~~v~~~~~~~-~iW~l~~~~~~~~ 281 (378)
++=+|.++-.+.. +..+-.||+.+.. ..-.+|... .... +.-.+..-+++...++.. .+|-|....
T Consensus 355 fHpDgLifgtgt~-----d~~vkiwdlks~~-~~a~Fpght--~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---- 422 (506)
T KOG0289|consen 355 FHPDGLIFGTGTP-----DGVVKIWDLKSQT-NVAKFPGHT--GPVKAISFSENGYWLATAADDGSVKLWDLRKLK---- 422 (506)
T ss_pred EcCCceEEeccCC-----CceEEEEEcCCcc-ccccCCCCC--CceeEEEeccCceEEEEEecCCeEEEEEehhhc----
Confidence 3446777665544 5788899998877 555677622 2222 333344456666666664 889886532
Q ss_pred eeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEE
Q 035482 282 WIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEYK-CRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 282 W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~~-~~~l~~yd~~t~~~~~v~ 350 (378)
...+|.+. ..+.+.-+.+...|..+...+ +-+++.|+-++++|+++.
T Consensus 423 --n~kt~~l~--------------------~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 423 --NFKTIQLD--------------------EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred --ccceeecc--------------------ccccceeEEEcCCCCeEEeecceeEEEEEecccccceeee
Confidence 12233321 011244556666787777765 456888899999999986
No 98
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=44.52 E-value=2.2e+02 Score=25.92 Aligned_cols=36 Identities=8% Similarity=0.141 Sum_probs=27.8
Q ss_pred EEEEEeeCCcEEEEEc-CCeEEEEeCCCCcEEEEEEe
Q 035482 317 RVLCLLKNGEILLEYK-CRALVSYNPRNEMFKDLLLH 352 (378)
Q Consensus 317 ~~~~~~~~g~vl~~~~-~~~l~~yd~~t~~~~~v~~~ 352 (378)
.-++..++|..++... ++.+-.||+.+++...|..-
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~H 112 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAH 112 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCeeeeeec
Confidence 4456667887777765 57799999999999998754
No 99
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=42.16 E-value=78 Score=28.56 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=43.7
Q ss_pred CceEEEEEEcCCCCeEEeCcc-cce---ee-cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcC
Q 035482 173 GKSEVQILTLGSQEWRSLGQV-NYH---ML-EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEK 240 (378)
Q Consensus 173 ~~~~~~Vyss~~~~W~~~~~~-p~~---~~-~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~l 240 (378)
.+..+.+|+..+.+|.....- .-. +. ....-+++.|.+-.-.. ....+..||+++.+|..+.-
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCC
Confidence 357899999999999987632 111 11 23556677776654332 35789999999999988754
No 100
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=41.99 E-value=2.8e+02 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=26.6
Q ss_pred CeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCc
Q 035482 208 GRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDE 243 (378)
Q Consensus 208 G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~ 243 (378)
+.|||.... ...|+.+|.++..-+.++.|..
T Consensus 37 ~~L~w~DI~-----~~~i~r~~~~~g~~~~~~~p~~ 67 (307)
T COG3386 37 GALLWVDIL-----GGRIHRLDPETGKKRVFPSPGG 67 (307)
T ss_pred CEEEEEeCC-----CCeEEEecCCcCceEEEECCCC
Confidence 678998876 6899999999999999998873
No 101
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=39.53 E-value=1.3e+02 Score=26.54 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=49.6
Q ss_pred CCCeEEeCcccceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCce-EeEEcCCCcc----------CcceeEEE
Q 035482 184 SQEWRSLGQVNYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQ-FRVVEKPDEL----------HRIHYDLV 252 (378)
Q Consensus 184 ~~~W~~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~-~~~i~lP~~~----------~~~~~~l~ 252 (378)
.+.|...-.+|... .....|+.+|.+|+.... ...|+.||+.++. -....+|... ......|+
T Consensus 55 ~~~~~~~~~lp~~~-~gTg~VVynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~a 128 (249)
T KOG3545|consen 55 RGRKAEKYRLPYSW-DGTGHVVYNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLA 128 (249)
T ss_pred ccCcceEEeCCCCc-cccceEEEcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccce
Confidence 34555554555544 345678999999998765 6799999999843 3444566511 11235566
Q ss_pred EeCCeEEEEEeCCCCc
Q 035482 253 NLGGCLSAAVPCSSGK 268 (378)
Q Consensus 253 ~~~G~L~~v~~~~~~~ 268 (378)
+-+..|.++....+..
T Consensus 129 vDE~GLWviYat~~~~ 144 (249)
T KOG3545|consen 129 VDENGLWVIYATPENA 144 (249)
T ss_pred ecccceeEEecccccC
Confidence 6666677776654443
No 102
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=38.01 E-value=55 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=22.6
Q ss_pred EEEEEcCCeEEEEeCCCCcEEEEEEeCCCC
Q 035482 327 ILLEYKCRALVSYNPRNEMFKDLLLHGTPN 356 (378)
Q Consensus 327 vl~~~~~~~l~~yd~~t~~~~~v~~~~~~~ 356 (378)
|+.......++.||.++++|++.+++|...
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~LF 51 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGTLF 51 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEeeEE
Confidence 444444456888899999999999887643
No 103
>PF15408 PH_7: Pleckstrin homology domain
Probab=37.88 E-value=11 Score=26.83 Aligned_cols=25 Identities=24% Similarity=0.588 Sum_probs=19.9
Q ss_pred cccccccccchhhhhhhccCCCccc
Q 035482 18 VTSLLHFKLVCKAWLNTAQNPLLPS 42 (378)
Q Consensus 18 ~~~l~r~r~VcK~W~~li~~~~F~~ 42 (378)
++-+...+-|||+|-.+..+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 3455667789999999999999843
No 104
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=34.53 E-value=3.7e+02 Score=24.72 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCcEEE-CCeEEEEeccCCCC--CCcEEEEEECCCceEeEEcCCCc-cCcceeEEEEe-CCeEEEEEeCCC-Cc-eEEEE
Q 035482 201 PSQVLV-NGRLHWCTWPRYRG--PSRLLISFDIADEQFRVVEKPDE-LHRIHYDLVNL-GGCLSAAVPCSS-GK-EIWVM 273 (378)
Q Consensus 201 ~~~v~~-~G~lyw~~~~~~~~--~~~~il~fD~~~e~~~~i~lP~~-~~~~~~~l~~~-~G~L~~v~~~~~-~~-~iW~l 273 (378)
..++.. +|.+.......... ....++..|=..++|+....+.. .......++++ +|+|.++.-... .. .+..-
T Consensus 149 g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S 228 (351)
T cd00260 149 GSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYES 228 (351)
T ss_pred cCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEE
Confidence 345666 48877665432111 12345555556689986544432 33345678888 899988765542 22 34444
Q ss_pred eeCCCCCceeeEEEE
Q 035482 274 KEYDVKESWIKEYNI 288 (378)
Q Consensus 274 ~~~~~~~~W~~~~~i 288 (378)
.+. ...|+.....
T Consensus 229 ~D~--G~tWs~~~~~ 241 (351)
T cd00260 229 RDM--GTTWTEALGT 241 (351)
T ss_pred cCC--CcCcccCcCC
Confidence 443 4789987654
No 105
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.43 E-value=1.5e+02 Score=26.08 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCeEEEEeCCCCcEEEEEEeCCCC
Q 035482 323 KNGEILLEYKCRALVSYNPRNEMFKDLLLHGTPN 356 (378)
Q Consensus 323 ~~g~vl~~~~~~~l~~yd~~t~~~~~v~~~~~~~ 356 (378)
.+|.+++..++..++..|++++++++.. +|..+
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~-rGHtD 157 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREY-RGHTD 157 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEE-cCCcc
Confidence 4778888888899999999999998863 34433
No 106
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=33.68 E-value=1.4e+02 Score=26.03 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=37.1
Q ss_pred eeCceEEEeecCCCceEEEEcccccceeeC--CCCCCCCCccEEEEEEEeCCCCCeEEEE
Q 035482 98 SCKGLLCLCDSSTKNRLYVYNPFTRNYVEL--PKSTEFQTQDVVFGFGFHPTTNKYKVVK 155 (378)
Q Consensus 98 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~l~~d~~~~~ykvv~ 155 (378)
..+|.|.-.. ...++|.+||.|+.--.+ .+....- ....+++-|.|..+.-+||.
T Consensus 36 pa~G~LYgl~--~~g~lYtIn~~tG~aT~vg~s~~~~al-~g~~~gvDFNP~aDRlRvvs 92 (236)
T PF14339_consen 36 PANGQLYGLG--STGRLYTINPATGAATPVGASPLTVAL-SGTAFGVDFNPAADRLRVVS 92 (236)
T ss_pred cCCCCEEEEe--CCCcEEEEECCCCeEEEeecccccccc-cCceEEEecCcccCcEEEEc
Confidence 4577775443 458999999999997666 2211111 13377888889888877774
No 107
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=33.52 E-value=4e+02 Score=24.77 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCeEEeCcccceeecCCCcEEE--CCeE-EEEeccCCCCCCcEEEE--EECCCceEeEEc----CCCccC
Q 035482 175 SEVQILTLGSQEWRSLGQVNYHMLEAPSQVLV--NGRL-HWCTWPRYRGPSRLLIS--FDIADEQFRVVE----KPDELH 245 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~~~~~~~~v~~--~G~l-yw~~~~~~~~~~~~il~--fD~~~e~~~~i~----lP~~~~ 245 (378)
.++.+|+...|.=......-.......+.+.+ ||++ |.++.- ...|.+ +|....++..++ +|....
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-----NSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-----CCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 57889999877554333111111122233333 5654 444433 244554 455557887763 566332
Q ss_pred cc--eeEE-EEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEcc--CCCCCccccccCccccccccccCceeEEEE
Q 035482 246 RI--HYDL-VNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGI--HVPRGLEQDLSQSFRDSKFFRNRSFVRVLC 320 (378)
Q Consensus 246 ~~--~~~l-~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (378)
+. ...+ +.-+|+..++.-.... .||+..-....+.=+.....+. ..|++ ..
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~PR~-----------------------F~ 297 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITPTEGQFPRD-----------------------FN 297 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCCcc-----------------------ce
Confidence 21 1222 3347877666543222 6666543321122222222211 11222 22
Q ss_pred EeeCCcEEEEEcC--Ce--EEEEeCCCCcEEEEE
Q 035482 321 LLKNGEILLEYKC--RA--LVSYNPRNEMFKDLL 350 (378)
Q Consensus 321 ~~~~g~vl~~~~~--~~--l~~yd~~t~~~~~v~ 350 (378)
+..+|++|+..+. +. ++.-|.+|+++..+.
T Consensus 298 i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 298 INPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred eCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 3357778877542 33 555599999998876
No 108
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.81 E-value=4e+02 Score=23.67 Aligned_cols=144 Identities=12% Similarity=0.076 Sum_probs=69.5
Q ss_pred eEEEEEEcCCCCeEEeCcccce-eecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCC---ccCcce-e
Q 035482 175 SEVQILTLGSQEWRSLGQVNYH-MLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPD---ELHRIH-Y 249 (378)
Q Consensus 175 ~~~~Vyss~~~~W~~~~~~p~~-~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~---~~~~~~-~ 249 (378)
-.+.|.++++++-...- +|.. ....+-.|.-+|++---+.+ .+..++.++-+..+..--.|. ..+..+ .
T Consensus 146 g~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il 219 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGHIL 219 (311)
T ss_pred CcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecC-----CccEEEEEccCCCccccceEhhheecccceEE
Confidence 45677777777443321 1111 11222334445554333322 456666666554442211122 112222 1
Q ss_pred -EEEEeCCeEEEEEeCCCCceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCcEE
Q 035482 250 -DLVNLGGCLSAAVPCSSGKEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGEIL 328 (378)
Q Consensus 250 -~l~~~~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl 328 (378)
.+..-+++..+.+..+....||..++.- ....++.- . . ++..--++..||+.+
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~-----kle~~l~g--h-----------~--------rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFF-----KLELVLTG--H-----------Q--------RWVWDCAFSADGEYL 273 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCce-----eeEEEeec--C-----------C--------ceEEeeeeccCccEE
Confidence 2334466665555544444999887631 11111111 0 0 123334455688888
Q ss_pred EEEc-CCeEEEEeCCCCcEEEEE
Q 035482 329 LEYK-CRALVSYNPRNEMFKDLL 350 (378)
Q Consensus 329 ~~~~-~~~l~~yd~~t~~~~~v~ 350 (378)
+... +...-.+|++.++-.+..
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EecCCCCceeecccccCceeeec
Confidence 8765 455667899998866654
No 109
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=29.47 E-value=2e+02 Score=21.60 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.0
Q ss_pred ceEEEEcccccc-eeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEE
Q 035482 112 NRLYVYNPFTRN-YVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKID 157 (378)
Q Consensus 112 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 157 (378)
-+++..+|.+++ |... . ....+.+..|...+.|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~-~------~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV-K------GTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES-S------SEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC-C------eEEEEEEEEECCCCEEEEEEEE
Confidence 468899999888 8865 1 2456677788888888888754
No 110
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=29.41 E-value=2.5e+02 Score=23.67 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCCcEEEEEEe-CCCCeEEEEEEeCCccccC-CCCCCC
Q 035482 333 CRALVSYNPRNEMFKDLLLH-GTPNLFEASVHEGSLSWID-SFSDND 377 (378)
Q Consensus 333 ~~~l~~yd~~t~~~~~v~~~-~~~~~~~~~~y~~sl~~~~-~~~~~~ 377 (378)
.+.||.|++.|++++.+.-- .-....-.+-|.+..+.+. .++|||
T Consensus 139 GGnLy~~nl~tg~~~~ly~~~dkkqQVis~e~~gd~L~Lki~vYddd 185 (200)
T PF15525_consen 139 GGNLYKYNLNTGNLTELYEWKDKKQQVISAEKNGDNLNLKINVYDDD 185 (200)
T ss_pred CCeEEEEEccCCceeEeeeccccceeEEEEEEeCCEEEEEEEEEecC
Confidence 46799999999999998742 2222223334555444444 444444
No 111
>PF13854 Kelch_5: Kelch motif
Probab=28.08 E-value=1.2e+02 Score=18.02 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=21.9
Q ss_pred CCCcEEECCeEEEEeccC--CCCCCcEEEEEECCC
Q 035482 200 APSQVLVNGRLHWCTWPR--YRGPSRLLISFDIAD 232 (378)
Q Consensus 200 ~~~~v~~~G~lyw~~~~~--~~~~~~~il~fD~~~ 232 (378)
..+++.+++.+|...... .....+.+..+|+.+
T Consensus 7 ~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 345678889999988763 122345677777764
No 112
>PTZ00334 trans-sialidase; Provisional
Probab=27.99 E-value=4.2e+02 Score=27.80 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=52.6
Q ss_pred CCCcEEE-CCeEEEEeccC-CCCCCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeC-CeEEEEEeCCCCc-eEEEEe
Q 035482 200 APSQVLV-NGRLHWCTWPR-YRGPSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLG-GCLSAAVPCSSGK-EIWVMK 274 (378)
Q Consensus 200 ~~~~v~~-~G~lyw~~~~~-~~~~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~-G~L~~v~~~~~~~-~iW~l~ 274 (378)
..++|.. ||.|-+-.... .......++.|-.++..|..-. .|+ .....+.+++++ |+|.|+..+.++. .++.-.
T Consensus 262 GGSGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~-~gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES~ 340 (780)
T PTZ00334 262 GGSGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSA-DGCSDPSVVEWKEGKLMMMTACDDGRRRVYESG 340 (780)
T ss_pred CcCeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCC-CCCCCCEEEEEcCCeEEEEEEeCCCCEEEEEEC
Confidence 3456655 67776654331 1223345777766676785422 232 234557899996 9999999887776 787776
Q ss_pred eCCCCCceeeE
Q 035482 275 EYDVKESWIKE 285 (378)
Q Consensus 275 ~~~~~~~W~~~ 285 (378)
+.| .+|+..
T Consensus 341 DmG--~tWtEA 349 (780)
T PTZ00334 341 DKG--DSWTEA 349 (780)
T ss_pred CCC--CChhhC
Confidence 655 678754
No 113
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=27.44 E-value=3.9e+02 Score=26.55 Aligned_cols=111 Identities=21% Similarity=0.332 Sum_probs=59.2
Q ss_pred eeCceEEEeecCCCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEE
Q 035482 98 SCKGLLCLCDSSTKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEV 177 (378)
Q Consensus 98 s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~ 177 (378)
..+|-+++.++ ...++.||||..++-.. .....+. ...+..-|-|.+++=-|+-.. ....+
T Consensus 59 n~dG~lL~SGS-DD~r~ivWd~~~~Kllh--sI~TgHt-aNIFsvKFvP~tnnriv~sgA---------------gDk~i 119 (758)
T KOG1310|consen 59 NADGELLASGS-DDTRLIVWDPFEYKLLH--SISTGHT-ANIFSVKFVPYTNNRIVLSGA---------------GDKLI 119 (758)
T ss_pred cCCCCEEeecC-CcceEEeecchhcceee--eeecccc-cceeEEeeeccCCCeEEEecc---------------CcceE
Confidence 45777777654 45789999999544332 2222121 344455667776654444321 11567
Q ss_pred EEEEcCCCCeEEeCc---ccceee-----cCCCcE-EECC-eEEEEeccCCCCCCcEEEEEECCC
Q 035482 178 QILTLGSQEWRSLGQ---VNYHML-----EAPSQV-LVNG-RLHWCTWPRYRGPSRLLISFDIAD 232 (378)
Q Consensus 178 ~Vyss~~~~W~~~~~---~p~~~~-----~~~~~v-~~~G-~lyw~~~~~~~~~~~~il~fD~~~ 232 (378)
.+|+...-+=+..+. .+..+. .-..-+ .-+| ..+|.+.. ++.|..+|+..
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE-----DGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE-----DGTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC-----CcceeeecccC
Confidence 788777532222210 011110 011112 2234 68898877 68899999865
No 114
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=26.29 E-value=4.3e+02 Score=22.91 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=26.9
Q ss_pred EEEEeeCCcEEEEE--cCCeEEEEeCCCCcE-EEEEEeCCC
Q 035482 318 VLCLLKNGEILLEY--KCRALVSYNPRNEMF-KDLLLHGTP 355 (378)
Q Consensus 318 ~~~~~~~g~vl~~~--~~~~l~~yd~~t~~~-~~v~~~~~~ 355 (378)
.+.+..+|+.++.. .++.+..||+++++. +++...+.+
T Consensus 253 ~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 253 QLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred eEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 35666788877764 357899999999984 667654444
No 115
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=25.22 E-value=6e+02 Score=24.16 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=31.3
Q ss_pred CCcEEEEEECCCceEeEEc-CCCccCcceeEEEEeCCeEEEEEeCCCC---c-eEEEEeeCCCCCceee
Q 035482 221 PSRLLISFDIADEQFRVVE-KPDELHRIHYDLVNLGGCLSAAVPCSSG---K-EIWVMKEYDVKESWIK 284 (378)
Q Consensus 221 ~~~~il~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~G~L~~v~~~~~~---~-~iW~l~~~~~~~~W~~ 284 (378)
..+.|+..|+.+.....+- -.. .-.+.+..-.+..|.+.+..... . .||.++..| ...|..
T Consensus 166 p~~~i~~idl~tG~~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v 231 (386)
T PF14583_consen 166 PHCRIFTIDLKTGERKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKV 231 (386)
T ss_dssp --EEEEEEETTT--EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EES
T ss_pred CCceEEEEECCCCceeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-Ccceee
Confidence 4578999999998887763 121 11223333345566666654322 2 899999876 344543
No 116
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.08 E-value=1.1e+02 Score=20.53 Aligned_cols=17 Identities=6% Similarity=0.036 Sum_probs=14.2
Q ss_pred CeEEEEeCCCCcEEEEE
Q 035482 334 RALVSYNPRNEMFKDLL 350 (378)
Q Consensus 334 ~~l~~yd~~t~~~~~v~ 350 (378)
-+++.||+++++++-+.
T Consensus 41 iKIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 41 IKIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCCeEEEEE
Confidence 36999999999987665
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=23.94 E-value=4.8e+02 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=20.4
Q ss_pred EEEeeCCcEEEEE--cCCeEEEEeCCCCcEEEE
Q 035482 319 LCLLKNGEILLEY--KCRALVSYNPRNEMFKDL 349 (378)
Q Consensus 319 ~~~~~~g~vl~~~--~~~~l~~yd~~t~~~~~v 349 (378)
+.+..+|+.++.. .+..+..||.++++..+.
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~ 244 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY 244 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 3445677765543 345688999998876653
No 118
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=23.73 E-value=1.5e+02 Score=17.04 Aligned_cols=23 Identities=22% Similarity=0.634 Sum_probs=16.8
Q ss_pred EECCeEEEEeccCCCCCCcEEEEEECCC
Q 035482 205 LVNGRLHWCTWPRYRGPSRLLISFDIAD 232 (378)
Q Consensus 205 ~~~G~lyw~~~~~~~~~~~~il~fD~~~ 232 (378)
..++.+||.... ...|.+.+++.
T Consensus 18 ~~~~~lYw~D~~-----~~~I~~~~~~g 40 (43)
T smart00135 18 WIEGRLYWTDWG-----LDVIEVANLDG 40 (43)
T ss_pred ecCCEEEEEeCC-----CCEEEEEeCCC
Confidence 446899998776 46787777754
No 119
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.52 E-value=7.1e+02 Score=24.40 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=30.7
Q ss_pred EEEEEEcCCC--CeEEeCccc----ceeecCCCcEEEC-CeEEEEeccCCCCCCcEEEEEECCC--ceEeE
Q 035482 176 EVQILTLGSQ--EWRSLGQVN----YHMLEAPSQVLVN-GRLHWCTWPRYRGPSRLLISFDIAD--EQFRV 237 (378)
Q Consensus 176 ~~~Vyss~~~--~W~~~~~~p----~~~~~~~~~v~~~-G~lyw~~~~~~~~~~~~il~fD~~~--e~~~~ 237 (378)
.+..++..+| .|+.....+ .........++.+ |.+|.-... ..|.++|.+| ..|+.
T Consensus 72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~------g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD------GRLVALDAETGKQVWKF 136 (488)
T ss_pred cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC------CeEEEEECCCCCEeeee
Confidence 3455566666 687533211 0011112234456 888876544 7999999975 45554
No 120
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=23.48 E-value=5.7e+02 Score=23.34 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=42.8
Q ss_pred EEEcCCC--CeEEeCcc-cceeecCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEEcCCCccCcceeEEEEe-
Q 035482 179 ILTLGSQ--EWRSLGQV-NYHMLEAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNL- 254 (378)
Q Consensus 179 Vyss~~~--~W~~~~~~-p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~l~~~- 254 (378)
||...+| +|...... +......-..+.+++.--|+... ...|+.-.=..++|..++++.........+..+
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-----~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~ 113 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-----PGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG 113 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-----TTEEEEESSTTSS-EE----TT-SS-EEEEEEEE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-----CceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC
Confidence 5555554 89876521 11100111233333333455544 356666666789999998765333333344444
Q ss_pred CCeEEEEEeCCCCceEEEEeeCCCCCceeeEE
Q 035482 255 GGCLSAAVPCSSGKEIWVMKEYDVKESWIKEY 286 (378)
Q Consensus 255 ~G~L~~v~~~~~~~~iW~l~~~~~~~~W~~~~ 286 (378)
++...++.. ...|+.-.+.| ..|....
T Consensus 114 ~~~~~l~~~---~G~iy~T~DgG--~tW~~~~ 140 (302)
T PF14870_consen 114 DGSAELAGD---RGAIYRTTDGG--KTWQAVV 140 (302)
T ss_dssp TTEEEEEET---T--EEEESSTT--SSEEEEE
T ss_pred CCcEEEEcC---CCcEEEeCCCC--CCeeEcc
Confidence 344444431 23788887755 6897654
No 121
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=23.43 E-value=6.2e+02 Score=23.72 Aligned_cols=112 Identities=11% Similarity=0.225 Sum_probs=66.0
Q ss_pred ECCeEEEEeccCCCCCCcEEEEEECCCc------eEeEEcCC---CccCcceeEEEEe--CC-eEEEEEeC------CCC
Q 035482 206 VNGRLHWCTWPRYRGPSRLLISFDIADE------QFRVVEKP---DELHRIHYDLVNL--GG-CLSAAVPC------SSG 267 (378)
Q Consensus 206 ~~G~lyw~~~~~~~~~~~~il~fD~~~e------~~~~i~lP---~~~~~~~~~l~~~--~G-~L~~v~~~------~~~ 267 (378)
.+|..+|.... +.|..+|+++. .|..+..- ..-.....+.+.+ +| +|+++... ...
T Consensus 204 ~dg~~~~vs~e------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 204 KSGRLVWPTYT------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCCcEEEEecC------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCC
Confidence 36889998765 79999996443 33333211 0111122233444 34 44443321 112
Q ss_pred -ceEEEEeeCCCCCceeeEEEEccCCCCCccccccCccccccccccCceeEEEEEeeCCc-EEEEEc--CCeEEEEeCCC
Q 035482 268 -KEIWVMKEYDVKESWIKEYNIGIHVPRGLEQDLSQSFRDSKFFRNRSFVRVLCLLKNGE-ILLEYK--CRALVSYNPRN 343 (378)
Q Consensus 268 -~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-vl~~~~--~~~l~~yd~~t 343 (378)
.+||+.+- ..+....+|..- ....-+++..||+ .++..+ .+.+..+|..+
T Consensus 278 ~~~V~ViD~----~t~kvi~~i~vG----------------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 278 SRFLFVVDA----KTGKRLRKIELG----------------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred CCEEEEEEC----CCCeEEEEEeCC----------------------CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 28999874 567788887652 1234577788999 777655 45699999999
Q ss_pred Cc-EEEE
Q 035482 344 EM-FKDL 349 (378)
Q Consensus 344 ~~-~~~v 349 (378)
++ ++.+
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 85 4445
No 122
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=22.77 E-value=5.5e+02 Score=22.92 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=34.9
Q ss_pred EeeeCceEEEeecCCCceEEEEcccccceeeC-------CCC----CCCCCccEEEEEEEeCCCCCeEE
Q 035482 96 VGSCKGLLCLCDSSTKNRLYVYNPFTRNYVEL-------PKS----TEFQTQDVVFGFGFHPTTNKYKV 153 (378)
Q Consensus 96 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~L-------P~~----~~~~~~~~~~~l~~d~~~~~ykv 153 (378)
+-.-+|.|...-- ..+.++++||.||+.... |.. ...+...+.-|++||+.++.+-|
T Consensus 180 LE~i~G~IyANVW-~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~v 247 (264)
T PF05096_consen 180 LEYINGKIYANVW-QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFV 247 (264)
T ss_dssp EEEETTEEEEEET-TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEE
T ss_pred EEEEcCEEEEEeC-CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEE
Confidence 3344888766543 468899999999996541 211 11122467889999998876433
No 123
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=22.68 E-value=2.6e+02 Score=21.66 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred CceEEEeecCC-CceEEEEcccccceeeCCC--CCCCCCccEEEEEEEeCCCCCeEEEE
Q 035482 100 KGLLCLCDSST-KNRLYVYNPFTRNYVELPK--STEFQTQDVVFGFGFHPTTNKYKVVK 155 (378)
Q Consensus 100 ~GLl~~~~~~~-~~~~~V~NP~T~~~~~LP~--~~~~~~~~~~~~l~~d~~~~~ykvv~ 155 (378)
+=+|++++..- -..+|.+||.+.+..++-. |..........-+-||..++.|+.|.
T Consensus 49 hflILfrd~~~~fRglY~~~~~~~~~~ki~G~gP~~i~~~mv~~~~KYdSg~K~F~~i~ 107 (123)
T PF08683_consen 49 HFLILFRDAGCQFRGLYSYDPESEELVKIYGTGPRVITPSMVDKFYKYDSGSKQFKPIP 107 (123)
T ss_dssp -EEEEESSSS-SEEEEEEE-TTSS-EEEEESSS-SEE-TTTEEEEEEEETTTTEEEE-S
T ss_pred eEEEEEecCCCceEEEEEEeCCCCeEEEEEccCcCccCHHHHHHHhcccccCceeeecc
Confidence 33456664211 1468888999988877732 22222234555677888888888773
No 124
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.32 E-value=6.5e+02 Score=23.57 Aligned_cols=103 Identities=14% Similarity=0.170 Sum_probs=56.1
Q ss_pred CcEEEEecCCCCcCCcceeeeccCCCCceeEEeeeCceEEEeec--------CCCceEEEEccccccee-eCCCCCCCC-
Q 035482 65 NQLYSFELSSRDEDNQTVHQIRVPALPEFDVVGSCKGLLCLCDS--------STKNRLYVYNPFTRNYV-ELPKSTEFQ- 134 (378)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~GLl~~~~~--------~~~~~~~V~NP~T~~~~-~LP~~~~~~- 134 (378)
+.++.+|... .+.+..++....|+. +++.-+..|.+... ...+.+-|+++.|.+.. +||.++.++
T Consensus 27 ~~v~ViD~~~----~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCC----CEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 6677888653 334556666666765 45555555555432 14568999999998865 344332211
Q ss_pred -CccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCe
Q 035482 135 -TQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEW 187 (378)
Q Consensus 135 -~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W 187 (378)
.......|++.+.. .+-.| .... +...+.|.+..++.=
T Consensus 102 ~~~~~~~~~~ls~dg-k~l~V--~n~~------------p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 102 LVGTYPWMTSLTPDN-KTLLF--YQFS------------PSPAVGVVDLEGKAF 140 (352)
T ss_pred hccCccceEEECCCC-CEEEE--ecCC------------CCCEEEEEECCCCcE
Confidence 12233345555542 22222 1111 125677888877644
No 125
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.04 E-value=1.3e+02 Score=21.80 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCeEEEEeCCCCcEE
Q 035482 324 NGEILLEYKCRALVSYNPRNEMFK 347 (378)
Q Consensus 324 ~g~vl~~~~~~~l~~yd~~t~~~~ 347 (378)
..+.+++++..+++++|++++..+
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~~K 39 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKVVK 39 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCeEE
Confidence 556777888889999999999877
No 126
>PRK04792 tolB translocation protein TolB; Provisional
Probab=21.86 E-value=7.3e+02 Score=23.96 Aligned_cols=141 Identities=11% Similarity=0.127 Sum_probs=71.6
Q ss_pred CCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE
Q 035482 110 TKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS 189 (378)
Q Consensus 110 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~ 189 (378)
....++++|..|++...+...+.. .....+.|..+ + ++.... ..+ ...+.+++..++..+.
T Consensus 240 g~~~L~~~dl~tg~~~~lt~~~g~-----~~~~~wSPDG~-~-La~~~~-~~g-----------~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 240 RKAEIFVQDIYTQVREKVTSFPGI-----NGAPRFSPDGK-K-LALVLS-KDG-----------QPEIYVVDIATKALTR 300 (448)
T ss_pred CCcEEEEEECCCCCeEEecCCCCC-----cCCeeECCCCC-E-EEEEEe-CCC-----------CeEEEEEECCCCCeEE
Confidence 345799999999987776543211 11234555432 2 222211 111 1567888888888776
Q ss_pred eCcccceeecCCCcEEECCe-EEEEeccCCCCCCcEEEEEECCCceEeEEcCCCccCcceeEEEEeCCeEEEEEeCCCCc
Q 035482 190 LGQVNYHMLEAPSQVLVNGR-LHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGK 268 (378)
Q Consensus 190 ~~~~p~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~l~~~~G~L~~v~~~~~~~ 268 (378)
+...... .......-+|. +++.... .....|..+|+++.+...+...... .... -..-+|+..++.......
T Consensus 301 lt~~~~~--~~~p~wSpDG~~I~f~s~~---~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~-~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 301 ITRHRAI--DTEPSWHPDGKSLIFTSER---GGKPQIYRVNLASGKVSRLTFEGEQ-NLGG-SITPDGRSMIMVNRTNGK 373 (448)
T ss_pred CccCCCC--ccceEECCCCCEEEEEECC---CCCceEEEEECCCCCEEEEecCCCC-CcCe-eECCCCCEEEEEEecCCc
Confidence 5432110 01111122443 5444332 1235799999988777666432211 1111 123366554444333333
Q ss_pred -eEEEEeeC
Q 035482 269 -EIWVMKEY 276 (378)
Q Consensus 269 -~iW~l~~~ 276 (378)
+||+++-.
T Consensus 374 ~~I~~~dl~ 382 (448)
T PRK04792 374 FNIARQDLE 382 (448)
T ss_pred eEEEEEECC
Confidence 89988753
No 127
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.83 E-value=4.4e+02 Score=24.32 Aligned_cols=56 Identities=18% Similarity=0.019 Sum_probs=39.8
Q ss_pred cCCCcEEECCeEEEEeccCCCCCCcEEEEEECCCceEeEE-cCCCccCcceeEEEEeCCeEEEEEeC
Q 035482 199 EAPSQVLVNGRLHWCTWPRYRGPSRLLISFDIADEQFRVV-EKPDELHRIHYDLVNLGGCLSAAVPC 264 (378)
Q Consensus 199 ~~~~~v~~~G~lyw~~~~~~~~~~~~il~fD~~~e~~~~i-~lP~~~~~~~~~l~~~~G~L~~v~~~ 264 (378)
+..++-..+|++|.+... .+.+..+|.++.++..+ .+|....+ |+-. |.+.+|...
T Consensus 204 mPhSPRWhdgrLwvldsg-----tGev~~vD~~~G~~e~Va~vpG~~rG----L~f~-G~llvVgmS 260 (335)
T TIGR03032 204 MPHSPRWYQGKLWLLNSG-----RGELGYVDPQAGKFQPVAFLPGFTRG----LAFA-GDFAFVGLS 260 (335)
T ss_pred CCcCCcEeCCeEEEEECC-----CCEEEEEcCCCCcEEEEEECCCCCcc----ccee-CCEEEEEec
Confidence 445667889999998876 68999999998999887 67752221 2222 777777644
No 128
>PRK05137 tolB translocation protein TolB; Provisional
Probab=20.78 E-value=7.4e+02 Score=23.66 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCceEEEEcccccceeeCCCCCCCCCccEEEEEEEeCCCCCeEEEEEEEEecCCCCcccccCCCceEEEEEEcCCCCeEE
Q 035482 110 TKNRLYVYNPFTRNYVELPKSTEFQTQDVVFGFGFHPTTNKYKVVKIDYCRKTHGNHRYYRGYGKSEVQILTLGSQEWRS 189 (378)
Q Consensus 110 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~Vyss~~~~W~~ 189 (378)
....++++|+.|++...|...+. ...+..+.|.. .. ++... .... ...+.+++..++.-+.
T Consensus 224 g~~~i~~~dl~~g~~~~l~~~~g-----~~~~~~~SPDG-~~-la~~~-~~~g-----------~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 224 GRPRVYLLDLETGQRELVGNFPG-----MTFAPRFSPDG-RK-VVMSL-SQGG-----------NTDIYTMDLRSGTTTR 284 (435)
T ss_pred CCCEEEEEECCCCcEEEeecCCC-----cccCcEECCCC-CE-EEEEE-ecCC-----------CceEEEEECCCCceEE
Confidence 34689999999999887754321 11123444532 22 22221 1111 1567777888877665
Q ss_pred eCcccceeecCCCcEEECCe-EEEEeccCCCCCCcEEEEEECCCceEeEEcCCCccCcceeEEEEeCCeEEEEEeCCCCc
Q 035482 190 LGQVNYHMLEAPSQVLVNGR-LHWCTWPRYRGPSRLLISFDIADEQFRVVEKPDELHRIHYDLVNLGGCLSAAVPCSSGK 268 (378)
Q Consensus 190 ~~~~p~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~il~fD~~~e~~~~i~lP~~~~~~~~~l~~~~G~L~~v~~~~~~~ 268 (378)
+...+.. .......-+|. +++.... .....|..+|+.+...+.+..... ...... ..-+|+..++.......
T Consensus 285 Lt~~~~~--~~~~~~spDG~~i~f~s~~---~g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~-~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 285 LTDSPAI--DTSPSYSPDGSQIVFESDR---SGSPQLYVMNADGSNPRRISFGGG-RYSTPV-WSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred ccCCCCc--cCceeEcCCCCEEEEEECC---CCCCeEEEEECCCCCeEEeecCCC-cccCeE-ECCCCCEEEEEEcCCCc
Confidence 5432211 01111122443 4443322 123578888988876666532211 001111 22356554444333333
Q ss_pred -eEEEEee
Q 035482 269 -EIWVMKE 275 (378)
Q Consensus 269 -~iW~l~~ 275 (378)
.||+++-
T Consensus 358 ~~i~~~d~ 365 (435)
T PRK05137 358 FSIGVMKP 365 (435)
T ss_pred eEEEEEEC
Confidence 7888774
No 129
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.17 E-value=6.1e+02 Score=24.96 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=54.6
Q ss_pred CcEEEEEECCCceE-eEEcCCCccCcceeEEEEeC--CeEEEEEeCCCCc-eEEEEeeCCCCCceeeEEEEccCCCCCcc
Q 035482 222 SRLLISFDIADEQF-RVVEKPDELHRIHYDLVNLG--GCLSAAVPCSSGK-EIWVMKEYDVKESWIKEYNIGIHVPRGLE 297 (378)
Q Consensus 222 ~~~il~fD~~~e~~-~~i~lP~~~~~~~~~l~~~~--G~L~~v~~~~~~~-~iW~l~~~~~~~~W~~~~~i~~~~~~~~~ 297 (378)
.+.|+...+.+..- ..+-.|.+ ...+|+.+. .+-.++...+.+. .+|-.+.....-.|.+.|.-+.
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sg---qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~------- 211 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSG---QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC------- 211 (673)
T ss_pred CCcEEEEecccCccccceecCCC---CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-------
Confidence 34566666655432 22333321 223344432 2233333334444 9999886555668888887533
Q ss_pred ccccCccccccccccCceeEEEEEeeCCcEEEEE--cCCeEEEEeCCCCcEEE
Q 035482 298 QDLSQSFRDSKFFRNRSFVRVLCLLKNGEILLEY--KCRALVSYNPRNEMFKD 348 (378)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vl~~~--~~~~l~~yd~~t~~~~~ 348 (378)
+-+|+...++.+|+. .+.+|+.||..+++...
T Consensus 212 -------------------~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 212 -------------------RGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred -------------------CcceecCCccceEEEecccceEEEeecccccccc
Confidence 224555566666653 36789999999887544
Done!