Query 035483
Match_columns 321
No_of_seqs 173 out of 1544
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 03:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 8E-91 1.7E-95 622.5 28.8 309 1-320 6-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 1.9E-49 4.1E-54 355.9 20.8 214 94-318 16-243 (321)
3 PF00191 Annexin: Annexin; In 99.7 2.7E-17 5.8E-22 117.9 8.5 66 251-316 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 4.2E-17 9E-22 116.9 7.2 66 15-91 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 1.2E-13 2.5E-18 94.5 5.3 53 39-91 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 2E-13 4.3E-18 93.4 5.6 53 111-163 1-53 (53)
7 PHA01794 hypothetical protein 59.2 84 0.0018 25.2 8.0 23 70-92 74-98 (134)
8 KOG2286 Exocyst complex subuni 53.8 2.1E+02 0.0046 29.7 12.0 184 115-320 251-450 (667)
9 PF13801 Metal_resist: Heavy-m 50.5 85 0.0018 23.8 7.1 51 44-96 34-84 (125)
10 COG5173 SEC6 Exocyst complex s 41.8 4E+02 0.0086 27.2 12.5 168 47-233 298-479 (742)
11 COG5118 BDP1 Transcription ini 40.8 1.4E+02 0.003 28.6 7.7 41 14-68 370-410 (507)
12 PF00249 Myb_DNA-binding: Myb- 40.6 77 0.0017 20.2 4.5 37 11-59 4-42 (48)
13 PF14003 YlbE: YlbE-like prote 38.0 78 0.0017 22.3 4.3 31 199-229 17-47 (65)
14 PF14003 YlbE: YlbE-like prote 36.4 43 0.00094 23.5 2.8 44 274-317 17-61 (65)
15 PF13766 ECH_C: 2-enoyl-CoA Hy 34.7 93 0.002 24.5 4.9 49 194-242 35-91 (118)
16 cd00171 Sec7 Sec7 domain; Doma 33.6 1.1E+02 0.0024 26.1 5.6 52 12-78 33-87 (185)
17 PF13720 Acetyltransf_11: Udp 31.7 70 0.0015 23.5 3.5 26 202-227 28-55 (83)
18 PF13758 Prefoldin_3: Prefoldi 29.9 1.7E+02 0.0036 22.5 5.3 41 11-62 29-74 (99)
19 PF13043 DUF3903: Domain of un 27.9 56 0.0012 20.1 1.9 17 281-297 9-25 (40)
20 smart00717 SANT SANT SWI3, AD 27.7 1.5E+02 0.0032 18.0 4.5 38 11-60 4-42 (49)
21 KOG4329 DNA-binding protein [G 24.7 1.6E+02 0.0035 28.1 5.2 58 232-298 243-300 (445)
22 cd00167 SANT 'SWI3, ADA2, N-Co 24.4 1.7E+02 0.0036 17.4 4.8 34 15-59 5-39 (45)
23 PF09888 DUF2115: Uncharacteri 24.0 4.3E+02 0.0094 22.1 7.4 51 117-167 10-67 (163)
24 KOG1916 Nuclear protein, conta 24.0 9.7E+02 0.021 26.2 13.9 83 69-151 899-982 (1283)
25 KOG0859 Synaptobrevin/VAMP-lik 23.7 98 0.0021 26.9 3.4 32 282-313 80-111 (217)
26 KOG0031 Myosin regulatory ligh 23.1 4.1E+02 0.009 22.3 6.8 21 119-139 21-41 (171)
27 KOG0527 HMG-box transcription 22.1 1.1E+02 0.0023 29.0 3.6 57 46-107 67-123 (331)
28 PF13921 Myb_DNA-bind_6: Myb-l 21.1 1.7E+02 0.0038 19.3 3.8 38 15-66 4-41 (60)
29 PF01369 Sec7: Sec7 domain; I 20.2 2.8E+02 0.006 23.7 5.7 55 12-81 37-94 (190)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-91 Score=622.50 Aligned_cols=309 Identities=43% Similarity=0.671 Sum_probs=306.0
Q ss_pred CccccCCCCCCChHHHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcc
Q 035483 1 MSTLTIPPVIPTAREDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDNKYSDVLRKRLSSEL 80 (321)
Q Consensus 1 ~~~~~~~~~~~~~~~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~ 80 (321)
|.++++|.+.|+|..||+.|++||+ ||||||++||+||++||++|||+|+.+|+..||+||.++|++|+
T Consensus 6 ~~~t~~~~~~f~p~~DAe~L~kA~k-----------G~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~EL 74 (321)
T KOG0819|consen 6 MAGTVVPAPVFDPVQDAEQLRKAMK-----------GFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSEL 74 (321)
T ss_pred CCcccCCCCCCChHHHHHHHHHHHh-----------cCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 6788999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHccCChHHHHHHHHHHHhcCCCCchhHHHHHhcCCHHHHHHHHHHHHHhhhchHHHHHHHhccccHHhhh
Q 035483 81 HGDFKRAVCLWVREPAARDANVLKRALRATVTDFKAATDVICSRTPAQLRQLKQVYLINCGARLEHDIESATYGDHKKLL 160 (321)
Q Consensus 81 sG~~~~~l~~l~~~p~~~da~~L~~A~kg~gtde~~lieIl~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~ll 160 (321)
||+|++++++|+.+|+++||..|++||||+||||.+||||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|
T Consensus 75 sG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklL 154 (321)
T KOG0819|consen 75 SGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLL 154 (321)
T ss_pred CccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcccccccHHHHHHHhcc------CCChHHHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHhhhhccCch
Q 035483 161 LGYVNTTRYEGPEIDKFLVEDDAKAINK------GRDNSFFIRIFTERSKAHMSALISTYKSMFGKPLEHAIKKETSGNL 234 (321)
Q Consensus 161 l~ll~~~r~e~~~vd~~~~~~da~~L~~------g~d~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~sg~~ 234 (321)
+.|++|.|+|...||..+|.+||+.|++ |+|+..|+.||++||..||+++++.|++.+|+++++.|+.+++|++
T Consensus 155 v~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~ 234 (321)
T KOG0819|consen 155 VSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDF 234 (321)
T ss_pred HHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchH
Confidence 9999999999889999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHHhcCCCCchhhHHHhhhCCHHHHHHHHHHHHHhhCccHHHHHhhcccHHHHHHHH
Q 035483 235 MYGLLTILRFVENPAIHFAKLLRKAMKGFGTDDSTLIWIIVTRAEVDMRYIKAAYINKYGKTLNEAVHSETSGYYRTFLL 314 (321)
Q Consensus 235 ~~~ll~~~~~~~~~~~~~A~~L~~A~~g~gtde~~liril~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~Ll 314 (321)
+.+|+++++|.+||+.|||+.||.||+|.|||+.+||||++|||+.||..|+.+|+++||+||..+|+.+|||||+++|+
T Consensus 235 ~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~Ll 314 (321)
T KOG0819|consen 235 EKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALL 314 (321)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC
Q 035483 315 ALLGPN 320 (321)
Q Consensus 315 ~ll~~~ 320 (321)
+|++++
T Consensus 315 aL~g~~ 320 (321)
T KOG0819|consen 315 ALLGGD 320 (321)
T ss_pred HHhCCC
Confidence 999986
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-49 Score=355.85 Aligned_cols=214 Identities=28% Similarity=0.452 Sum_probs=205.4
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHhcCCHHHHHHHHHHHHHhhhchHHHHHHHhccccHHhhhhhhcccccCCCcc
Q 035483 94 EPAARDANVLKRALRATVTDFKAATDVICSRTPAQLRQLKQVYLINCGARLEHDIESATYGDHKKLLLGYVNTTRYEGPE 173 (321)
Q Consensus 94 ~p~~~da~~L~~A~kg~gtde~~lieIl~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~lll~ll~~~r~e~~~ 173 (321)
..|..||+.|++||+|+||||.+||+||+.|||.|++.|+++|+..||++|.+++++++||+|++++++|+..|
T Consensus 16 f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p------ 89 (321)
T KOG0819|consen 16 FDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPP------ 89 (321)
T ss_pred CChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCH------
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccccHHHHHHHhcc-----CCChHHHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHhhhhccCchHHHHHHHHHhccCh
Q 035483 174 IDKFLVEDDAKAINK-----GRDNSFFIRIFTERSKAHMSALISTYKSMFGKPLEHAIKKETSGNLMYGLLTILRFVENP 248 (321)
Q Consensus 174 vd~~~~~~da~~L~~-----g~d~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~sg~~~~~ll~~~~~~~~~ 248 (321)
++.||..|++ |||++++|+|+|+|||.|+++|+++|+..|+++|+++|.+++||+|+++|+.++.+.|++
T Consensus 90 -----~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e 164 (321)
T KOG0819|consen 90 -----AEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDE 164 (321)
T ss_pred -----HHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCcc
Confidence 7899999998 899999999999999999999999999999999999999999999999999999998863
Q ss_pred --------hHHHHHHHHHHHh-cCCCCchhhHHHhhhCCHHHHHHHHHHHHHhhCccHHHHHhhcccHHHHHHHHHhcC
Q 035483 249 --------AIHFAKLLRKAMK-GFGTDDSTLIWIIVTRAEVDMRYIKAAYINKYGKTLNEAVHSETSGYYRTFLLALLG 318 (321)
Q Consensus 249 --------~~~~A~~L~~A~~-g~gtde~~liril~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~Ll~ll~ 318 (321)
+..||+.|++|.+ .+|||+..+++|+++||..||+.+..+|++.+|+++++.|+++++|+|+++|+++++
T Consensus 165 ~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llaiv~ 243 (321)
T KOG0819|consen 165 GDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAIVK 243 (321)
T ss_pred CCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHHHH
Confidence 5679999999996 578999999999999999999999999999999999999999999999999999874
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.72 E-value=2.7e-17 Score=117.93 Aligned_cols=66 Identities=50% Similarity=0.748 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHhhhCCHHHHHHHHHHHHHhhCccHHHHHhhcccHHHHHHHHHh
Q 035483 251 HFAKLLRKAMKGFGTDDSTLIWIIVTRAEVDMRYIKAAYINKYGKTLNEAVHSETSGYYRTFLLAL 316 (321)
Q Consensus 251 ~~A~~L~~A~~g~gtde~~liril~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~Ll~l 316 (321)
+||+.|++|++|+|+|+..+++|+++||+.|++.|+.+|++.||++|.++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.70 E-value=4.2e-17 Score=116.92 Aligned_cols=66 Identities=36% Similarity=0.589 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcccccHHHHHHHH
Q 035483 15 EDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDNKYSDVLRKRLSSELHGDFKRAVCLW 91 (321)
Q Consensus 15 ~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~sG~~~~~l~~l 91 (321)
.||+.|++|++ |+|+|+..+++|+++||+.|++.|..+|+..||++|.++|++++||+|++++++|
T Consensus 1 ~DA~~l~~a~~-----------~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALK-----------GWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHS-----------SSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHcc-----------CCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 48999999999 9999999999999999999999999999999999999999999999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.45 E-value=1.2e-13 Score=94.53 Aligned_cols=53 Identities=36% Similarity=0.609 Sum_probs=51.2
Q ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcccccHHHHHHHH
Q 035483 39 GCDSGTIINILAHRDSQQVELITQEYDNKYSDVLRKRLSSELHGDFKRAVCLW 91 (321)
Q Consensus 39 g~de~~ii~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~sG~~~~~l~~l 91 (321)
|+||..|++|+++||+.||+.|+.+|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999998864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.43 E-value=2e-13 Score=93.37 Aligned_cols=53 Identities=45% Similarity=0.604 Sum_probs=51.2
Q ss_pred CCCchhHHHHHhcCCHHHHHHHHHHHHHhhhchHHHHHHHhccccHHhhhhhh
Q 035483 111 VTDFKAATDVICSRTPAQLRQLKQVYLINCGARLEHDIESATYGDHKKLLLGY 163 (321)
Q Consensus 111 gtde~~lieIl~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~lll~l 163 (321)
||||..|++|+|+|++.|++.|+++|+..||++|+++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999998865
No 7
>PHA01794 hypothetical protein
Probab=59.25 E-value=84 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.8
Q ss_pred hHHHHHHhhcc--cccHHHHHHHHc
Q 035483 70 DVLRKRLSSEL--HGDFKRAVCLWV 92 (321)
Q Consensus 70 ~~L~~~l~~e~--sG~~~~~l~~l~ 92 (321)
..|.+.|+.|+ ||-|..-+.-|.
T Consensus 74 e~lF~eleqEm~~SGFF~~ki~kyi 98 (134)
T PHA01794 74 EGLFAELEKEMVDSGFFRAKIKKYI 98 (134)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45888888887 888888777665
No 8
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.76 E-value=2.1e+02 Score=29.69 Aligned_cols=184 Identities=12% Similarity=0.094 Sum_probs=100.9
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHhhhchHHHHHHHhccc-cHHh-hh--hhhcccccCCCcccccccHHHHHHHhcc--
Q 035483 115 KAATDVICSRTPAQLRQLKQVYLINCGARLEHDIESATYG-DHKK-LL--LGYVNTTRYEGPEIDKFLVEDDAKAINK-- 188 (321)
Q Consensus 115 ~~lieIl~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg-~~~~-ll--l~ll~~~r~e~~~vd~~~~~~da~~L~~-- 188 (321)
..+-+.+..+.|.++. |..+|-..|...|...+....|- .+.. ++ ++|+.+ .+++
T Consensus 251 ~~~~~~l~~cfpp~~~-if~~~l~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~------------------~~~~~~ 311 (667)
T KOG2286|consen 251 RVAKRVLVPCFPPHYN-IFSAYLELYHQALSDLLRDLASEALELREILQLLAWVRN------------------EYYTPL 311 (667)
T ss_pred HHHHHhhcccCCchhH-HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH------------------HhcChh
Confidence 3444566667777775 45558888888877766664332 2222 22 222221 1111
Q ss_pred -CCChHHHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHhhhhccCchHHHHHHHHHhccC--------hhHHHHHHHHHH
Q 035483 189 -GRDNSFFIRIFTERSKAHMSALISTYKSMFGKPLEHAIKKETSGNLMYGLLTILRFVEN--------PAIHFAKLLRKA 259 (321)
Q Consensus 189 -g~d~~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~sg~~~~~ll~~~~~~~~--------~~~~~A~~L~~A 259 (321)
..+-.+..++=....+.|+.++.+.|-.....++.+-+.+-++-+.....- -..-.++ -+.....++.+.
T Consensus 312 l~~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~-~~~P~rd~~g~~~t~~p~~~fqmi~q~ 390 (667)
T KOG2286|consen 312 LQLNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAK-ETEPPRDEEGYLYTPGPVIFFQMITQQ 390 (667)
T ss_pred hhccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCccccccccCcccHHHHHhhHHH
Confidence 112234444555678889999999998876666665554433222221111 0000001 122334455555
Q ss_pred HhcC-CCCchhhHHHhhhCCHHHHHHHHHHHHHhhCccHHHHHhhcccHHHHHHHHHhcCCC
Q 035483 260 MKGF-GTDDSTLIWIIVTRAEVDMRYIKAAYINKYGKTLNEAVHSETSGYYRTFLLALLGPN 320 (321)
Q Consensus 260 ~~g~-gtde~~liril~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~Ll~ll~~~ 320 (321)
+... ++..+....+.++ +-.++....+-|.+.+-...+.. +.+.++.|...++|...++
T Consensus 391 l~~~~~~~~Dl~~~~~~~-~~~~v~~f~~~~~~~~~~~~e~~-~~~~~~~l~~y~iA~~N~~ 450 (667)
T KOG2286|consen 391 LQVAAATSSDLSGKILRS-LLSEVPSFARNYPKAQDEDQESH-RREQPEGLREYLIANINNN 450 (667)
T ss_pred HHHHHhhHHHHHHHHHHH-HHHHhHHHHHHHHHhHHHHHHhc-hhcccccHHHHHHHHHhch
Confidence 5432 4545555555554 44556666666776666666655 5678888999999987654
No 9
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=50.52 E-value=85 Score=23.79 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=31.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcccccHHHHHHHHccCCh
Q 035483 44 TIINILAHRDSQQVELITQEYDNKYSDVLRKRLSSELHGDFKRAVCLWVREPA 96 (321)
Q Consensus 44 ~ii~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~sG~~~~~l~~l~~~p~ 96 (321)
.....-.+.|++|+..|+..+...+.. ...++.++......+...+..+++
T Consensus 34 ~~~~~~l~Lt~eQ~~~l~~~~~~~~~~--~~~~r~~~~~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 34 PMLADMLNLTPEQQAKLRALMDEFRQE--MRALRQELRAARQELRALLAAPPP 84 (125)
T ss_dssp HHHHHHS-TTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred hhhhhhcCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344444688999999999999988753 334444444444455555555443
No 10
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=41.78 E-value=4e+02 Score=27.16 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcccccHHHHHHH-Hc------cCChHHHHHHHHHHHhc-CCCCchhHH
Q 035483 47 NILAHRDSQQVELITQEYDNKYSDVLRKRLSSELHGDFKRAVCL-WV------REPAARDANVLKRALRA-TVTDFKAAT 118 (321)
Q Consensus 47 ~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~sG~~~~~l~~-l~------~~p~~~da~~L~~A~kg-~gtde~~li 118 (321)
+.++.-.|.. ..|.+.|...|.+.|...+-.+.+-....++.. +. .+-.+.++.-...+++| .|.++..
T Consensus 298 e~i~~~~pp~-~NI~~~y~~~YqecL~~L~td~v~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~l~d~e~g-- 374 (742)
T COG5173 298 ENISLSFPPF-DNILTLYHNNYQECLLKLFTDEVTERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGRLLDNETG-- 374 (742)
T ss_pred HHccccCCch-HHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhcccccCCcch--
Confidence 4444444433 458888999998888888877766554433222 11 23345555555555655 3333321
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhchHHHHHHHhccccHHhhhhhhcccccCCCcc-cccc---cHHHHHHHhcc--CCCh
Q 035483 119 DVICSRTPAQLRQLKQVYLINCGARLEHDIESATYGDHKKLLLGYVNTTRYEGPE-IDKF---LVEDDAKAINK--GRDN 192 (321)
Q Consensus 119 eIl~~rs~~~~~~i~~~Y~~~~~~~L~~di~~~~sg~~~~lll~ll~~~r~e~~~-vd~~---~~~~da~~L~~--g~d~ 192 (321)
.+-+.|...+...+.+-+-.-+...+..++..--...|++++. +-++ ..+--.+++.- +|+.
T Consensus 375 ------------~L~~~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~ 442 (742)
T COG5173 375 ------------ELLEKYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNR 442 (742)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCc
Confidence 1233454444444444333322222333322111111111100 0000 00111112211 5555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHhhhhccCc
Q 035483 193 SFFIRIFTERSKAHMSALISTYKSMFGKPLEHAIKKETSGN 233 (321)
Q Consensus 193 ~~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~sg~ 233 (321)
.-++-++. +|+-.+...|++.....|.+.+.+.++|+
T Consensus 443 sdvvgiV~----~~i~~~~tk~q~~wks~l~ee~~kq~~~n 479 (742)
T COG5173 443 SDVVGIVF----AHITRTITKYQEIWKSNLVEEMDKQFKSN 479 (742)
T ss_pred cchhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44333332 46667888888888888888888887765
No 11
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=40.78 E-value=1.4e+02 Score=28.57 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 035483 14 REDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDNKY 68 (321)
Q Consensus 14 ~~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~~~ 68 (321)
..+.+..|+|+. -||||...|..+..+|+ |.+|+.-|...-
T Consensus 370 ~~e~ekFYKALs-----------~wGtdF~LIs~lfP~R~---RkqIKaKfi~Ee 410 (507)
T COG5118 370 KKEIEKFYKALS-----------IWGTDFSLISSLFPNRE---RKQIKAKFIKEE 410 (507)
T ss_pred HHHHHHHHHHHH-----------HhcchHHHHHHhcCchh---HHHHHHHHHHHh
Confidence 468899999999 99999999999998886 555666666433
No 12
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=40.59 E-value=77 Score=20.24 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHHhcccchhhccccccccCC-HHHHHHHhc-CCCHHHHHH
Q 035483 11 PTAREDAKNLHKAFKESWDIKKRLHVGLGCD-SGTIINILA-HRDSQQVEL 59 (321)
Q Consensus 11 ~~~~~da~~L~~A~~~~~~~~~~~~~g~g~d-e~~ii~il~-~rs~~qr~~ 59 (321)
+++++ -+.|.+|++ -+|.+ =..|...+. +||+.|...
T Consensus 4 Wt~eE-~~~l~~~v~-----------~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 4 WTEEE-DEKLLEAVK-----------KYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp S-HHH-HHHHHHHHH-----------HSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred CCHHH-HHHHHHHHH-----------HhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 34444 467778888 77877 899999999 999887543
No 13
>PF14003 YlbE: YlbE-like protein
Probab=38.04 E-value=78 Score=22.28 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.8
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCHHHHhhhh
Q 035483 199 FTERSKAHMSALISTYKSMFGKPLEHAIKKE 229 (321)
Q Consensus 199 l~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~ 229 (321)
..+|+|.++.+.-.++...|++++-+-|++-
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4579999999999999999999999998773
No 14
>PF14003 YlbE: YlbE-like protein
Probab=36.36 E-value=43 Score=23.55 Aligned_cols=44 Identities=14% Similarity=0.266 Sum_probs=33.4
Q ss_pred hhhCCHHHHHHHHHHHHHhhCccHHHHHhhcccH-HHHHHHHHhc
Q 035483 274 IVTRAEVDMRYIKAAYINKYGKTLNEAVHSETSG-YYRTFLLALL 317 (321)
Q Consensus 274 l~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~sG-~~~~~Ll~ll 317 (321)
..+|.+.++.+.-.++...||+++-+.|.+-..| .+...++.++
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 3459999999999999999999999999865433 3445554443
No 15
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=34.70 E-value=93 Score=24.47 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCHHHHhhhhc--------cCchHHHHHHHH
Q 035483 194 FFIRIFTERSKAHMSALISTYKSMFGKPLEHAIKKET--------SGNLMYGLLTIL 242 (321)
Q Consensus 194 ~li~Il~~rs~~~l~~I~~~Y~~~~g~~L~~~i~~~~--------sg~~~~~ll~~~ 242 (321)
...+.|.++||.-+....+.+++..+.+|.+.+.-++ +|||.+++.+++
T Consensus 35 ~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 35 KTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4457889999999999999999888899999988764 477888777665
No 16
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=33.62 E-value=1.1e+02 Score=26.06 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHHHh---hhHHHHHHhh
Q 035483 12 TAREDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDNKY---SDVLRKRLSS 78 (321)
Q Consensus 12 ~~~~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~~~---~~~L~~~l~~ 78 (321)
+|..-|+-|+.- . |.|...|-+.|+... +-...+...|-..+ |.++.++|+.
T Consensus 33 ~~~~iA~fl~~~-~-------------~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 33 SPKEIAKFLYET-E-------------GLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred CHHHHHHHHHhC-C-------------CCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 566666666654 4 679999999999987 45588888899887 7788888775
No 17
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=31.70 E-value=70 Score=23.53 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHcCC--CHHHHhh
Q 035483 202 RSKAHMSALISTYKSMFGK--PLEHAIK 227 (321)
Q Consensus 202 rs~~~l~~I~~~Y~~~~g~--~L~~~i~ 227 (321)
-|++++.+|+++|+..|.. +++++++
T Consensus 28 fs~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 28 FSKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp S-HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4789999999999999843 4555543
No 18
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=29.93 E-value=1.7e+02 Score=22.50 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHhcccchhhccccccccCCHHHHHHHhcC-----CCHHHHHHHHH
Q 035483 11 PTAREDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAH-----RDSQQVELITQ 62 (321)
Q Consensus 11 ~~~~~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~-----rs~~qr~~i~~ 62 (321)
.++..|...+++-+. |...++..|-.||+. ||++|.-.+..
T Consensus 29 ~~~~e~l~~i~r~f~-----------g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l~ 74 (99)
T PF13758_consen 29 DATREDLLRIRRDFG-----------GSLVTEKEIKEILGEGQGITRTREQVVDVLS 74 (99)
T ss_pred CCCHHHHHHHHHhcC-----------cccccHHHHHHHhCCCCCCCcCHHHHHHHHH
Confidence 456778888888888 999999999999998 78888776644
No 19
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=27.86 E-value=56 Score=20.10 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhCccH
Q 035483 281 DMRYIKAAYINKYGKTL 297 (321)
Q Consensus 281 ~l~~i~~~Y~~~yg~~L 297 (321)
-++.++.+-+++||++|
T Consensus 9 ai~kvr~eckrrfgktl 25 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTL 25 (40)
T ss_pred HHHHHHHHHHHHhchhh
Confidence 36788899999999987
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=27.68 E-value=1.5e+02 Score=17.99 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHhcccchhhcccccccc-CCHHHHHHHhcCCCHHHHHHH
Q 035483 11 PTAREDAKNLHKAFKESWDIKKRLHVGLG-CDSGTIINILAHRDSQQVELI 60 (321)
Q Consensus 11 ~~~~~da~~L~~A~~~~~~~~~~~~~g~g-~de~~ii~il~~rs~~qr~~i 60 (321)
+++++| +.|.+++. -.| .+=..|...+.+||+.|...-
T Consensus 4 Wt~~E~-~~l~~~~~-----------~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 4 WTEEED-ELLIELVK-----------KYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred CCHHHH-HHHHHHHH-----------HHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 455555 47777887 677 788899999999999876543
No 21
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=24.68 E-value=1.6e+02 Score=28.12 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=36.9
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHHhcCCCCchhhHHHhhhCCHHHHHHHHHHHHHhhCccHH
Q 035483 232 GNLMYGLLTILRFVENPAIHFAKLLRKAMKGFGTDDSTLIWIIVTRAEVDMRYIKAAYINKYGKTLN 298 (321)
Q Consensus 232 g~~~~~ll~~~~~~~~~~~~~A~~L~~A~~g~gtde~~liril~~rs~~~l~~i~~~Y~~~yg~~L~ 298 (321)
.|-++||..+++|--| ..+|++.+--+-.++..-++..++.++++.-+.++ .|||++.
T Consensus 243 kDnEqAL~~LvkcnfD--------teeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~-~yGKDF~ 300 (445)
T KOG4329|consen 243 KDNEQALYELVKCNFD--------TEEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLE-LYGKDFH 300 (445)
T ss_pred cccHHHHHHHHHcCCc--------HHHHHHhcCCcceecccccccCCHHHHHHHHHHHH-HhcccHH
Confidence 4567788888887433 33455554445555555566667777777777766 7777764
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=24.39 E-value=1.7e+02 Score=17.44 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcccchhhcccccccc-CCHHHHHHHhcCCCHHHHHH
Q 035483 15 EDAKNLHKAFKESWDIKKRLHVGLG-CDSGTIINILAHRDSQQVEL 59 (321)
Q Consensus 15 ~da~~L~~A~~~~~~~~~~~~~g~g-~de~~ii~il~~rs~~qr~~ 59 (321)
++-+.|.+++. ..| .+=..|...+.+||..|.+.
T Consensus 5 eE~~~l~~~~~-----------~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVK-----------KYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHH-----------HHCcCCHHHHHhHcCCCCHHHHHH
Confidence 34556777777 667 77789999999999887654
No 23
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=23.97 E-value=4.3e+02 Score=22.11 Aligned_cols=51 Identities=6% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-------hhhchHHHHHHHhccccHHhhhhhhcccc
Q 035483 117 ATDVICSRTPAQLRQLKQVYLI-------NCGARLEHDIESATYGDHKKLLLGYVNTT 167 (321)
Q Consensus 117 lieIl~~rs~~~~~~i~~~Y~~-------~~~~~L~~di~~~~sg~~~~lll~ll~~~ 167 (321)
|-+.+...|.-+++.++..+.. .|.+.+...+...+.+.+.++..+--.+.
T Consensus 10 Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~~~~~~~ 67 (163)
T PF09888_consen 10 LKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFFEYFFGTYHEIKNMYRSGS 67 (163)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 4455566788888888877766 57777777777777777777655433333
No 24
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=23.97 E-value=9.7e+02 Score=26.19 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=40.5
Q ss_pred hhHHHHHHhhcccccHHHHHHHHccCChHHHHHHHHHHHhcC-CCCchhHHHHHhcCCHHHHHHHHHHHHHhhhchHHHH
Q 035483 69 SDVLRKRLSSELHGDFKRAVCLWVREPAARDANVLKRALRAT-VTDFKAATDVICSRTPAQLRQLKQVYLINCGARLEHD 147 (321)
Q Consensus 69 ~~~L~~~l~~e~sG~~~~~l~~l~~~p~~~da~~L~~A~kg~-gtde~~lieIl~~rs~~~~~~i~~~Y~~~~~~~L~~d 147 (321)
.++|...+.+.+.|+++-.+-.++....+..++.+++-+... -.+|..+-+.=-.-.+.--+.+.+++..++++.+.+.
T Consensus 899 Q~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e~ti~~E 978 (1283)
T KOG1916|consen 899 QKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFEKTIKKE 978 (1283)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888777766665444444444433333220 1122222111111111222334445555666666666
Q ss_pred HHHh
Q 035483 148 IESA 151 (321)
Q Consensus 148 i~~~ 151 (321)
|++.
T Consensus 979 l~~t 982 (1283)
T KOG1916|consen 979 LAKT 982 (1283)
T ss_pred HHhh
Confidence 6653
No 25
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=98 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCccHHHHHhhcccHHHHHHH
Q 035483 282 MRYIKAAYINKYGKTLNEAVHSETSGYYRTFL 313 (321)
Q Consensus 282 l~~i~~~Y~~~yg~~L~~~I~~~~sG~~~~~L 313 (321)
|+.|++-|.++||.....++.....-+|.+.|
T Consensus 80 Le~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL 111 (217)
T KOG0859|consen 80 LERIKEDFKKRYGGGAHTAVAYSMNKEFSSVL 111 (217)
T ss_pred HHHHHHHHHHHhccchhHHHHhHhHHHHHHHH
No 26
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=23.12 E-value=4.1e+02 Score=22.27 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 035483 119 DVICSRTPAQLRQLKQVYLIN 139 (321)
Q Consensus 119 eIl~~rs~~~~~~i~~~Y~~~ 139 (321)
.+...-+..|+++.|+||.-+
T Consensus 21 nvFamf~q~QIqEfKEAF~~m 41 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLM 41 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHH
Confidence 355666889999999999764
No 27
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=22.05 E-value=1.1e+02 Score=29.00 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhHHHHHHhhcccccHHHHHHHHccCChHHHHHHHHHHH
Q 035483 46 INILAHRDSQQVELITQEYDNKYSDVLRKRLSSELHGDFKRAVCLWVREPAARDANVLKRAL 107 (321)
Q Consensus 46 i~il~~rs~~qr~~i~~~Y~~~~~~~L~~~l~~e~sG~~~~~l~~l~~~p~~~da~~L~~A~ 107 (321)
++.+.=++..||+.|++.+-++++-+|.+.|-++.+. |.---+-|....|+.||.--
T Consensus 67 MNAFMVWSq~~RRkma~qnP~mHNSEISK~LG~~WK~-----Lse~EKrPFi~EAeRLR~~H 123 (331)
T KOG0527|consen 67 MNAFMVWSQGQRRKLAKQNPKMHNSEISKRLGAEWKL-----LSEEEKRPFVDEAERLRAQH 123 (331)
T ss_pred cchhhhhhHHHHHHHHHhCcchhhHHHHHHHHHHHhh-----cCHhhhccHHHHHHHHHHHH
Confidence 4445557999999999999999999999999887531 11112345666676666543
No 28
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=21.06 E-value=1.7e+02 Score=19.35 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 035483 15 EDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDN 66 (321)
Q Consensus 15 ~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~ 66 (321)
++-+.|..+++ -.|.+=..|.+.|.+||+.| |+..|..
T Consensus 4 eEd~~L~~~~~-----------~~g~~W~~Ia~~l~~Rt~~~---~~~r~~~ 41 (60)
T PF13921_consen 4 EEDELLLELVK-----------KYGNDWKKIAEHLGNRTPKQ---CRNRWRN 41 (60)
T ss_dssp HHHHHHHHHHH-----------HHTS-HHHHHHHSTTS-HHH---HHHHHHH
T ss_pred HHHHHHHHHHH-----------HHCcCHHHHHHHHCcCCHHH---HHHHHHH
Confidence 34456677776 45667789999997799854 4555555
No 29
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=20.24 E-value=2.8e+02 Score=23.65 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHhcccchhhccccccccCCHHHHHHHhcCCCHHHHHHHHHHHHHHh---hhHHHHHHhhccc
Q 035483 12 TAREDAKNLHKAFKESWDIKKRLHVGLGCDSGTIINILAHRDSQQVELITQEYDNKY---SDVLRKRLSSELH 81 (321)
Q Consensus 12 ~~~~da~~L~~A~~~~~~~~~~~~~g~g~de~~ii~il~~rs~~qr~~i~~~Y~~~~---~~~L~~~l~~e~s 81 (321)
+|..=|+-| .-.. |.+...|-++|++ +.+....|...|-..+ |.++.++|+.-++
T Consensus 37 ~~~~iA~fL-~~~~-------------~l~k~~ige~Lg~-~~~~n~~vL~~y~~~fdf~~~~i~~ALR~~l~ 94 (190)
T PF01369_consen 37 DPKSIAKFL-FQTP-------------GLDKKKIGEYLGK-DNPFNRDVLKEYISLFDFSGMSIDEALRKFLS 94 (190)
T ss_dssp SHHHHHHHH-HHTT-------------TS-HHHHHHHHTS-SSHHHHHHHHHHHHTSS-TTS-HHHHHHHHCT
T ss_pred CHHHHHHHH-HhCC-------------CCCHHHHHHHHhc-cchHHHHHHHHHHHHcCCcCccHHHHHHHhcc
Confidence 566667777 3333 6799999999999 4455577777888765 7788888876543
Done!